| Definition | Prochlorococcus marinus str. MIT 9515, complete genome. |
|---|---|
| Accession | NC_008817 |
| Length | 1,704,176 |
Click here to switch to the map view.
The map label for this gene is 123966677
Identifier: 123966677
GI number: 123966677
Start: 1278256
End: 1278993
Strand: Reverse
Name: 123966677
Synonym: P9515_14441
Alternate gene names: NA
Gene position: 1278993-1278256 (Counterclockwise)
Preceding gene: 123966678
Following gene: 123966675
Centisome position: 75.05
GC content: 38.89
Gene sequence:
>738_bases ATGCCAGCAAGTAGTAATTTTAATCAAGCGATTAGAGATGCTCAAACTAGTTCCATTGTTGGACCAAATGTAGTAAGTAA AGCTCTTCCCTACGTAGGGGGAGGAATGGTGTTAACTTCTATGGGAGTGTTGGGAGGGGTCTCATTAATAGCTACAAATC CTTCATTATTTCAACCTCTTTCTCTTGTTGCTCTAATAGCTGAATTGGTTTTGTTTTTCGTGGCAACGAGTGCGGCAAAT AATGCAAATAATGCAAAGGCTTTACCTTTGTTAACAGGGTTCAGCTTGTTAACTGGATTTACATTGAGCGGGATAGTAGC TTTAGCAATTGGAACAGTTGGTATTGGATCCGTTGGTACTGCTGCACTAGCAACAGGAATTACTTTTGTAATAGCCTCAT ATACAGGCCAAAGAATGAGTGATAGCGTTGGACAAGCTCTTAGTGGAGTTGTTGGACTAGGCTTGATTGGTTTGTTAATA GCAATGTTTGTTCAGCTCATTGGTGGTTTCTTTGCTCCAGGAATTTTTGGAGGTTCAGGACTTGAACTTATGATTGCAGG TTTCGGAACAGTTTTATTCGTTGCAATGTCTTTCTTAGACTTTTACACAATGCCGAGAAGATATAGTGACGATCAATATC TTGCTGGTGCTCTAGGTATGTATTTAACATACATTAATTTATTTGTATTCATTCTAAGACTGATGATTGCTCTTCAAGGT GGTGGAAGAAGGAATTAA
Upstream 100 bases:
>100_bases CAAAGAATAATTGAGGCCTATAAATAAACTATTACTGTGGTCATCCGTACACTGAAATGCAAAAAATCAGATAGAATGAG CGTAGTTAAAAAGGTATAAA
Downstream 100 bases:
>100_bases AAAATAAATTTAAACCAAAACGTCTATTTGAAGGAAGCGTAGATCTTATCTACGCTTTTTTTATTGTGCAATATCGGAAA TTTGATGCTTAATAAATTCC
Product: integral membrane protein, interacts with FtsH
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 245; Mature: 244
Protein sequence:
>245_residues MPASSNFNQAIRDAQTSSIVGPNVVSKALPYVGGGMVLTSMGVLGGVSLIATNPSLFQPLSLVALIAELVLFFVATSAAN NANNAKALPLLTGFSLLTGFTLSGIVALAIGTVGIGSVGTAALATGITFVIASYTGQRMSDSVGQALSGVVGLGLIGLLI AMFVQLIGGFFAPGIFGGSGLELMIAGFGTVLFVAMSFLDFYTMPRRYSDDQYLAGALGMYLTYINLFVFILRLMIALQG GGRRN
Sequences:
>Translated_245_residues MPASSNFNQAIRDAQTSSIVGPNVVSKALPYVGGGMVLTSMGVLGGVSLIATNPSLFQPLSLVALIAELVLFFVATSAAN NANNAKALPLLTGFSLLTGFTLSGIVALAIGTVGIGSVGTAALATGITFVIASYTGQRMSDSVGQALSGVVGLGLIGLLI AMFVQLIGGFFAPGIFGGSGLELMIAGFGTVLFVAMSFLDFYTMPRRYSDDQYLAGALGMYLTYINLFVFILRLMIALQG GGRRN >Mature_244_residues PASSNFNQAIRDAQTSSIVGPNVVSKALPYVGGGMVLTSMGVLGGVSLIATNPSLFQPLSLVALIAELVLFFVATSAANN ANNAKALPLLTGFSLLTGFTLSGIVALAIGTVGIGSVGTAALATGITFVIASYTGQRMSDSVGQALSGVVGLGLIGLLIA MFVQLIGGFFAPGIFGGSGLELMIAGFGTVLFVAMSFLDFYTMPRRYSDDQYLAGALGMYLTYINLFVFILRLMIALQGG GRRN
Specific function: Unknown
COG id: COG0670
COG function: function code R; Integral membrane protein, interacts with FtsH
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25184; Mature: 25053
Theoretical pI: Translated: 9.36; Mature: 9.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPASSNFNQAIRDAQTSSIVGPNVVSKALPYVGGGMVLTSMGVLGGVSLIATNPSLFQPL CCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHCHHHEECCCHHHHHH SLVALIAELVLFFVATSAANNANNAKALPLLTGFSLLTGFTLSGIVALAIGTVGIGSVGT HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH AALATGITFVIASYTGQRMSDSVGQALSGVVGLGLIGLLIAMFVQLIGGFFAPGIFGGSG HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC LELMIAGFGTVLFVAMSFLDFYTMPRRYSDDQYLAGALGMYLTYINLFVFILRLMIALQG HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GGRRN CCCCC >Mature Secondary Structure PASSNFNQAIRDAQTSSIVGPNVVSKALPYVGGGMVLTSMGVLGGVSLIATNPSLFQPL CCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHCHHHEECCCHHHHHH SLVALIAELVLFFVATSAANNANNAKALPLLTGFSLLTGFTLSGIVALAIGTVGIGSVGT HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH AALATGITFVIASYTGQRMSDSVGQALSGVVGLGLIGLLIAMFVQLIGGFFAPGIFGGSG HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC LELMIAGFGTVLFVAMSFLDFYTMPRRYSDDQYLAGALGMYLTYINLFVFILRLMIALQG HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GGRRN CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA