Click here to switch to the map view.

The map label for this gene is recR [H]

Identifier: 123966421

GI number: 123966421

Start: 1044161

End: 1044760

Strand: Reverse

Name: recR [H]

Synonym: P9515_11881

Alternate gene names: 123966421

Gene position: 1044760-1044161 (Counterclockwise)

Preceding gene: 123966423

Following gene: 123966420

Centisome position: 61.31

GC content: 33.33

Gene sequence:

>600_bases
TTGACAACTTTTACCAAACCACTTTCAAAATTAATTGGTCATTTTGAGAAATTTCCAGGAATTGGTCCAAGGACAGCTCA
AAGGTTGGCATTATTCATTCTGAAACAATCTGAAAGTAGTATCAGAGATTTCTCCAAGGCATTATTAGAGGCTCATAGTA
ATGTAGGCCATTGTAAAAAATGCTTTAATTTAACTTCAGAAGAAGAATGTGATATTTGCAGAAATGCTGAGAGAAATCAA
AATATAATTTGTGTAGTAGCAGAGACTAAAGACTTATTAGCTTTAGAAAGAGCTAGAGAGTTTAAGGGGGTATACCATGT
TATTGGTGGATTGATTTCTCCAATGGATTCAATTGGTCCAGAGATATTAGAAATAAGAAGTTTAGTTGAGAGAGTTAGTA
AATCAGAGATTGATGAAATTATATTGGCATTAACTCCTAGTGTTGAAGGAGACACTACTAGTCTTTATATAGGAAAATTA
TTAACTCCTTTTACCAAAGTAACAAGAATTGCTTATGGGCTTCCGATGGGAAGCGAACTTGAATACGTTGATGAAGTTAC
TCTTGCTAGAGCTCTAGAAGGAAGAACAAATTTAATTTAA

Upstream 100 bases:

>100_bases
TAAGAAATTATTAATTAAAAACATAATAAGACATTAAAAGCAAACAAATAGAACAAATTTCAAAATATGCGTCTAAATTA
ATCTTAGAAGAAATTTTACC

Downstream 100 bases:

>100_bases
AAATGAAAGATAAAAATCAAATTAAAATAGAAAAGATTTTAAGGCTTCCTTCTTGGATAAAATTTCCAATTAGTAAAGCC
TCTGAATTTGAGAAGATTCA

Product: recombination protein RecR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MTTFTKPLSKLIGHFEKFPGIGPRTAQRLALFILKQSESSIRDFSKALLEAHSNVGHCKKCFNLTSEEECDICRNAERNQ
NIICVVAETKDLLALERAREFKGVYHVIGGLISPMDSIGPEILEIRSLVERVSKSEIDEIILALTPSVEGDTTSLYIGKL
LTPFTKVTRIAYGLPMGSELEYVDEVTLARALEGRTNLI

Sequences:

>Translated_199_residues
MTTFTKPLSKLIGHFEKFPGIGPRTAQRLALFILKQSESSIRDFSKALLEAHSNVGHCKKCFNLTSEEECDICRNAERNQ
NIICVVAETKDLLALERAREFKGVYHVIGGLISPMDSIGPEILEIRSLVERVSKSEIDEIILALTPSVEGDTTSLYIGKL
LTPFTKVTRIAYGLPMGSELEYVDEVTLARALEGRTNLI
>Mature_198_residues
TTFTKPLSKLIGHFEKFPGIGPRTAQRLALFILKQSESSIRDFSKALLEAHSNVGHCKKCFNLTSEEECDICRNAERNQN
IICVVAETKDLLALERAREFKGVYHVIGGLISPMDSIGPEILEIRSLVERVSKSEIDEIILALTPSVEGDTTSLYIGKLL
TPFTKVTRIAYGLPMGSELEYVDEVTLARALEGRTNLI

Specific function: May play a role in DNA repair. It seems to be involved in an recBC-independent recombinational process of DNA repair. It may act with recF and recO [H]

COG id: COG0353

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

Organism=Escherichia coli, GI1786678, Length=194, Percent_Identity=40.7216494845361, Blast_Score=158, Evalue=3e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000093
- InterPro:   IPR006171
- InterPro:   IPR015967 [H]

Pfam domain/function: PF02132 RecR; PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 22112; Mature: 21981

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: PS01300 RECR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTFTKPLSKLIGHFEKFPGIGPRTAQRLALFILKQSESSIRDFSKALLEAHSNVGHCKK
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHH
CFNLTSEEECDICRNAERNQNIICVVAETKDLLALERAREFKGVYHVIGGLISPMDSIGP
HHCCCCCCHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCH
EILEIRSLVERVSKSEIDEIILALTPSVEGDTTSLYIGKLLTPFTKVTRIAYGLPMGSEL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCH
EYVDEVTLARALEGRTNLI
HHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TTFTKPLSKLIGHFEKFPGIGPRTAQRLALFILKQSESSIRDFSKALLEAHSNVGHCKK
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHH
CFNLTSEEECDICRNAERNQNIICVVAETKDLLALERAREFKGVYHVIGGLISPMDSIGP
HHCCCCCCHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCH
EILEIRSLVERVSKSEIDEIILALTPSVEGDTTSLYIGKLLTPFTKVTRIAYGLPMGSEL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCH
EYVDEVTLARALEGRTNLI
HHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA