| Definition | Prochlorococcus marinus str. MIT 9515, complete genome. |
|---|---|
| Accession | NC_008817 |
| Length | 1,704,176 |
Click here to switch to the map view.
The map label for this gene is cdsA [H]
Identifier: 123966408
GI number: 123966408
Start: 1031015
End: 1031872
Strand: Direct
Name: cdsA [H]
Synonym: P9515_11751
Alternate gene names: 123966408
Gene position: 1031015-1031872 (Clockwise)
Preceding gene: 123966407
Following gene: 123966414
Centisome position: 60.5
GC content: 31.93
Gene sequence:
>858_bases ATGAGATTGCGAAGTGGTTTACTAATCGGATTATTTGGGTTAGTAGTTGTGTTATTAGGAGGATGGTTTTTCACAATAGC AATCGTATTACTTACTTATATTGCACTACTCGAATTTTTTAGAATGGCTGAATTCACTGGAATAAAACCAGCCACTAAAA CTACATTATTTTCATGTTTCATAATTACGATCTCAACATATCTAGAAACTATCGGATTCCTTGATAGAGAAATATACAAT TCGATATTACCCATGTGTTCAGTTGGAATATGTACATGGTTACTGCTTCAGCCAAAGTCAGGGACTATTTCTGATATCGC AGCATCTATTTTTGGCTTGTTTTACTTAGGTTTTTTACCTAGTTATTGGATTAAATTAAGAGCAATTGAATCGACTATGG ATAATTTGTCAGAGGGAATATTATCGTTCGAAAGCTTCTCTAATTCCACAGGTCTCTATCTAACATTAATTTCTTGCTTG TTAATAGTGGCGAGTGATATTGGTTCTTATTTTATTGGCAAGTCATTTGGGAAAAAGGCCCTTTCTCCCATATCCCCAAG TAAAACTCTCGAAGGTTTGATAGGAGGAATAATATGTTCAATTTTAGTCGCAACTTTTTTTGGTTTTTTACTTAATTGGC AAAATCCAATTTTAATTGGAATATTGTATGGAATGTTAGTTTCACTTATGGCTTTAGTAGGGGATTTAATCGAATCAATG ATGAAAAGAGATGCAAAAATAAAAGATTCTGGAACTTTTTTACCTGGTCATGGTGGCATTCTTGATAGAATTGATAGTTA TATTTTCACCCCATCAGTTATCTATTATATAATTATAATTTTAAAGTATTTTAGTTAA
Upstream 100 bases:
>100_bases AATAGATAAAGAAAGAATAGATTGGATAGAAACTCAAAGTTTATATAACCAAGATCTGTTAAATTCTTATATAAGGGTCC TACATAACTAGAAATTCAAT
Downstream 100 bases:
>100_bases TCATCAAAAATTACTTTTGATGATAAATCTACATTTATTACTTCATTTTTAATATTGCAGTAATTAACTTTAATATTTTT ATCTAAAGGTAGGAATATCT
Product: phosphatidate cytidylyltransferase
Products: NA
Alternate protein names: CDP-DAG synthase; CDP-DG synthase; CDP-diacylglycerol synthase; CDS; CDP-diglyceride pyrophosphorylase; CDP-diglyceride synthase; CTP:phosphatidate cytidylyltransferase [H]
Number of amino acids: Translated: 285; Mature: 285
Protein sequence:
>285_residues MRLRSGLLIGLFGLVVVLLGGWFFTIAIVLLTYIALLEFFRMAEFTGIKPATKTTLFSCFIITISTYLETIGFLDREIYN SILPMCSVGICTWLLLQPKSGTISDIAASIFGLFYLGFLPSYWIKLRAIESTMDNLSEGILSFESFSNSTGLYLTLISCL LIVASDIGSYFIGKSFGKKALSPISPSKTLEGLIGGIICSILVATFFGFLLNWQNPILIGILYGMLVSLMALVGDLIESM MKRDAKIKDSGTFLPGHGGILDRIDSYIFTPSVIYYIIIILKYFS
Sequences:
>Translated_285_residues MRLRSGLLIGLFGLVVVLLGGWFFTIAIVLLTYIALLEFFRMAEFTGIKPATKTTLFSCFIITISTYLETIGFLDREIYN SILPMCSVGICTWLLLQPKSGTISDIAASIFGLFYLGFLPSYWIKLRAIESTMDNLSEGILSFESFSNSTGLYLTLISCL LIVASDIGSYFIGKSFGKKALSPISPSKTLEGLIGGIICSILVATFFGFLLNWQNPILIGILYGMLVSLMALVGDLIESM MKRDAKIKDSGTFLPGHGGILDRIDSYIFTPSVIYYIIIILKYFS >Mature_285_residues MRLRSGLLIGLFGLVVVLLGGWFFTIAIVLLTYIALLEFFRMAEFTGIKPATKTTLFSCFIITISTYLETIGFLDREIYN SILPMCSVGICTWLLLQPKSGTISDIAASIFGLFYLGFLPSYWIKLRAIESTMDNLSEGILSFESFSNSTGLYLTLISCL LIVASDIGSYFIGKSFGKKALSPISPSKTLEGLIGGIICSILVATFFGFLLNWQNPILIGILYGMLVSLMALVGDLIESM MKRDAKIKDSGTFLPGHGGILDRIDSYIFTPSVIYYIIIILKYFS
Specific function: Unknown
COG id: COG0575
COG function: function code I; CDP-diglyceride synthetase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CDS family [H]
Homologues:
Organism=Escherichia coli, GI1787677, Length=116, Percent_Identity=47.4137931034483, Blast_Score=104, Evalue=8e-24, Organism=Escherichia coli, GI87081696, Length=133, Percent_Identity=39.0977443609023, Blast_Score=99, Evalue=4e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000374 [H]
Pfam domain/function: PF01148 CTP_transf_1 [H]
EC number: =2.7.7.41 [H]
Molecular weight: Translated: 31427; Mature: 31427
Theoretical pI: Translated: 7.80; Mature: 7.80
Prosite motif: PS01315 CDS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLRSGLLIGLFGLVVVLLGGWFFTIAIVLLTYIALLEFFRMAEFTGIKPATKTTLFSCF CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH IITISTYLETIGFLDREIYNSILPMCSVGICTWLLLQPKSGTISDIAASIFGLFYLGFLP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH SYWIKLRAIESTMDNLSEGILSFESFSNSTGLYLTLISCLLIVASDIGSYFIGKSFGKKA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSPISPSKTLEGLIGGIICSILVATFFGFLLNWQNPILIGILYGMLVSLMALVGDLIESM CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH MKRDAKIKDSGTFLPGHGGILDRIDSYIFTPSVIYYIIIILKYFS HHCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCC >Mature Secondary Structure MRLRSGLLIGLFGLVVVLLGGWFFTIAIVLLTYIALLEFFRMAEFTGIKPATKTTLFSCF CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH IITISTYLETIGFLDREIYNSILPMCSVGICTWLLLQPKSGTISDIAASIFGLFYLGFLP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH SYWIKLRAIESTMDNLSEGILSFESFSNSTGLYLTLISCLLIVASDIGSYFIGKSFGKKA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSPISPSKTLEGLIGGIICSILVATFFGFLLNWQNPILIGILYGMLVSLMALVGDLIESM CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH MKRDAKIKDSGTFLPGHGGILDRIDSYIFTPSVIYYIIIILKYFS HHCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]