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The map label for this gene is pcbA [H]

Identifier: 123965928

GI number: 123965928

Start: 627755

End: 628813

Strand: Direct

Name: pcbA [H]

Synonym: P9515_06931

Alternate gene names: 123965928

Gene position: 627755-628813 (Clockwise)

Preceding gene: 123965926

Following gene: 123965929

Centisome position: 36.84

GC content: 40.04

Gene sequence:

>1059_bases
ATGCAAACCTATGGCAATCCAGATACTACCTACGGATGGTGGGCTGGTAACTCAGGTGTAGCGAATCGCTCAGGAAAATT
CATTGCTGCTCATGTAGCTCATGCAGGATTAATTGTTTTCTGGGCGGGTGCTTTCACCCTTTTCGAACTTTCACGATTCG
ACCCAAGTGTTCCAATGGGACATCAACCTCTAATCGTTCTACCTCATTTAGCAACCCTAGGAATTGGGTTTGATGCTGAT
GGAGTAATGATGGGAGATACTAAGCCTGTCCTTGCGATAGCAATAGTTCACTTAGTCTCTTCCATGGTTTTGGCTGCCGG
AGGACTTTTACATTCTCTACTTCTTCCAGGGAATTTAGAAGAGTCTGACGTGGCTAAAGCTAGGAAATTCAATATTGAAT
GGGATAATCCAGACAAATTGACTTTCATTCTTGGACATCACCTTATTATTCTAGGATTTGCTGTCATTGCTTTCGTCGAA
TGGGCGAGAGTCCACGGTGTTTATGATCCAGCTATTGGTGCGGTAAGAAAGGTTGAGTATGATTTAAATCTTGCTCATAT
TTGGAATCACCAAACTGATTTCTTGACTATTGATAGTCTTGAAGATGTTATGGGAGGACATGCCTTCTTAGCTTTTGTCG
AAATTACTGGTGGTGCTTGGCATATTGCTACAAAACAAGTTGGTGAATTCACTAAATTCAAAGGGAAAGGACTTCTTTCT
GCAGAAGCCGTACTTTCATGGTCTCTTGCAGGAATTGGTTGGATGGCAATTATAGCTGCCTTCTGGAGTGCATCAAATAC
AACAGTTTATCCAACTGAATTTTTTGGTGAACCACTTGAATTGAAATTTAGTATTTCTCCTTATTGGGTTGATACAGTTG
ATCTCCCTGATGGTTCTTACACCTCAAGGGCATGGTTAGCAAATGTACATTACTATTTTGGTTTCTTCTTTATTCAAGGT
CATCTATGGCATGCATTAAGAGCATTAGGATTTGACTTTAAGAGAGTTACAAATGCTATCAGTAATATTGATAGTGCTAC
TGTTACTCTTAAAGATTAA

Upstream 100 bases:

>100_bases
AATCTCTTTAGAATTAATAACCTTTACAATTTTGTTGTGAATTAAGCTCTTTGATGAAATATAAAGTATTCTCGAAACGT
TTAAGCTAATCAATTCCTAA

Downstream 100 bases:

>100_bases
ATTTTAAATCATTAATAATATTTAAAGGCCTCATTATTTGAGGCCTTTTTTATTTGGTAAGATTAATTTATTAAATTAAA
TTTATAGAGTTATTAAATCT

Product: light-harvesting complex protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MQTYGNPDTTYGWWAGNSGVANRSGKFIAAHVAHAGLIVFWAGAFTLFELSRFDPSVPMGHQPLIVLPHLATLGIGFDAD
GVMMGDTKPVLAIAIVHLVSSMVLAAGGLLHSLLLPGNLEESDVAKARKFNIEWDNPDKLTFILGHHLIILGFAVIAFVE
WARVHGVYDPAIGAVRKVEYDLNLAHIWNHQTDFLTIDSLEDVMGGHAFLAFVEITGGAWHIATKQVGEFTKFKGKGLLS
AEAVLSWSLAGIGWMAIIAAFWSASNTTVYPTEFFGEPLELKFSISPYWVDTVDLPDGSYTSRAWLANVHYYFGFFFIQG
HLWHALRALGFDFKRVTNAISNIDSATVTLKD

Sequences:

>Translated_352_residues
MQTYGNPDTTYGWWAGNSGVANRSGKFIAAHVAHAGLIVFWAGAFTLFELSRFDPSVPMGHQPLIVLPHLATLGIGFDAD
GVMMGDTKPVLAIAIVHLVSSMVLAAGGLLHSLLLPGNLEESDVAKARKFNIEWDNPDKLTFILGHHLIILGFAVIAFVE
WARVHGVYDPAIGAVRKVEYDLNLAHIWNHQTDFLTIDSLEDVMGGHAFLAFVEITGGAWHIATKQVGEFTKFKGKGLLS
AEAVLSWSLAGIGWMAIIAAFWSASNTTVYPTEFFGEPLELKFSISPYWVDTVDLPDGSYTSRAWLANVHYYFGFFFIQG
HLWHALRALGFDFKRVTNAISNIDSATVTLKD
>Mature_352_residues
MQTYGNPDTTYGWWAGNSGVANRSGKFIAAHVAHAGLIVFWAGAFTLFELSRFDPSVPMGHQPLIVLPHLATLGIGFDAD
GVMMGDTKPVLAIAIVHLVSSMVLAAGGLLHSLLLPGNLEESDVAKARKFNIEWDNPDKLTFILGHHLIILGFAVIAFVE
WARVHGVYDPAIGAVRKVEYDLNLAHIWNHQTDFLTIDSLEDVMGGHAFLAFVEITGGAWHIATKQVGEFTKFKGKGLLS
AEAVLSWSLAGIGWMAIIAAFWSASNTTVYPTEFFGEPLELKFSISPYWVDTVDLPDGSYTSRAWLANVHYYFGFFFIQG
HLWHALRALGFDFKRVTNAISNIDSATVTLKD

Specific function: The antenna complex functions as a light receptor, it captures and delivers excitation energy to photosystem II and possibly to photosystem I. The Prochlorales pcb genes are not related to the higher plant LHCs [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. IsiA/pcb subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 38638; Mature: 38638

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: PS00626 RCC1_2 ; PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTYGNPDTTYGWWAGNSGVANRSGKFIAAHVAHAGLIVFWAGAFTLFELSRFDPSVPMG
CCCCCCCCCCEEEECCCCCCCCCCCCEEEEHHHHCCEEEEHHHHHHHHHHHHCCCCCCCC
HQPLIVLPHLATLGIGFDADGVMMGDTKPVLAIAIVHLVSSMVLAAGGLLHSLLLPGNLE
CCCEEEECCHHHEECCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
ESDVAKARKFNIEWDNPDKLTFILGHHLIILGFAVIAFVEWARVHGVYDPAIGAVRKVEY
HHHHHHHHEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEEEEE
DLNLAHIWNHQTDFLTIDSLEDVMGGHAFLAFVEITGGAWHIATKQVGEFTKFKGKGLLS
CCEEEEEECCCCCEEEECCHHHHHCCCEEEEEEEECCCEEEEHHHHHHHHHHHCCCCCEE
AEAVLSWSLAGIGWMAIIAAFWSASNTTVYPTEFFGEPLELKFSISPYWVDTVDLPDGSY
HHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHCCCCEEEEEEECCEEEEEEECCCCCC
TSRAWLANVHYYFGFFFIQGHLWHALRALGFDFKRVTNAISNIDSATVTLKD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEC
>Mature Secondary Structure
MQTYGNPDTTYGWWAGNSGVANRSGKFIAAHVAHAGLIVFWAGAFTLFELSRFDPSVPMG
CCCCCCCCCCEEEECCCCCCCCCCCCEEEEHHHHCCEEEEHHHHHHHHHHHHCCCCCCCC
HQPLIVLPHLATLGIGFDADGVMMGDTKPVLAIAIVHLVSSMVLAAGGLLHSLLLPGNLE
CCCEEEECCHHHEECCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
ESDVAKARKFNIEWDNPDKLTFILGHHLIILGFAVIAFVEWARVHGVYDPAIGAVRKVEY
HHHHHHHHEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEEEEE
DLNLAHIWNHQTDFLTIDSLEDVMGGHAFLAFVEITGGAWHIATKQVGEFTKFKGKGLLS
CCEEEEEECCCCCEEEECCHHHHHCCCEEEEEEEECCCEEEEHHHHHHHHHHHCCCCCEE
AEAVLSWSLAGIGWMAIIAAFWSASNTTVYPTEFFGEPLELKFSISPYWVDTVDLPDGSY
HHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHCCCCEEEEEEECCEEEEEEECCCCCC
TSRAWLANVHYYFGFFFIQGHLWHALRALGFDFKRVTNAISNIDSATVTLKD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8986795; 12917642 [H]