Click here to switch to the map view.

The map label for this gene is yggS [C]

Identifier: 123965691

GI number: 123965691

Start: 405536

End: 406174

Strand: Direct

Name: yggS [C]

Synonym: P9515_04561

Alternate gene names: 123965691

Gene position: 405536-406174 (Clockwise)

Preceding gene: 123965690

Following gene: 123965692

Centisome position: 23.8

GC content: 29.26

Gene sequence:

>639_bases
TTGGAAATTTCAAATTACCTACAAATAAAAAAGGAATTACCACTTAATGTCAATTTACTTGCTGTGAGTAAGGGGTTTGG
CAGTCAAGATATCAAAATTATTAATGATAAAGGTCAAAACGATTTTGGTGAAAGTAGATTTCAAGAAGCTATTGAAAAAA
AACTCTTATTAAAAGATTTTAAAGATATAAAATGGCACTTCATTGGAAGAATTCAGAGTAATAAAATACGTAAAATAGTA
CAAAATTTTGACTATATACATTCTGTAGACTCATATGAAAAGTTACTAAAGATTTCTAATATTGCATTTGAAGAACATAA
AAACCCATTAATAATGTTGCAAGTAAAATTAATGGATGATCCAAGTAAAGGAGGTTTTAATCCCAAAGATTTGTTAGGAA
AATGGGATGAGATTAAACAATTGAAAAGTATCAAAATTAAAGGGCTTATGACTATTAACCCAAAAGGTTTAAATTCAACA
CAAAATATTAAACTATTTAAAGAATGCCGTAATCTTGCTAATTCACTAAAACTTCATGATTGTTCAATGGGAATGTCCCA
GGACTGGAAGGAAGCGGTTGAGGCAGGCTCTACTTGGTTAAGACTAGGATCTATAATCTTTGGGAATAGATCATATTAG

Upstream 100 bases:

>100_bases
TAGAAATCAGTCTGAATTGAATTTGCAAAGATCTAGAAAAAAAACACCAGAGGATTATCAAAAATGGGAGAATTTATTTA
AACAAACTTTTTTATAAAAT

Downstream 100 bases:

>100_bases
TCAGTAATTAATCATATTTTATAATAATCTTGTTTTTAAACTTGCGATTAACTATAACTAACGTTATTTAAGTATAGGTA
GTTTATTCATTTATAAAAGA

Product: TIM-barrel fold family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MEISNYLQIKKELPLNVNLLAVSKGFGSQDIKIINDKGQNDFGESRFQEAIEKKLLLKDFKDIKWHFIGRIQSNKIRKIV
QNFDYIHSVDSYEKLLKISNIAFEEHKNPLIMLQVKLMDDPSKGGFNPKDLLGKWDEIKQLKSIKIKGLMTINPKGLNST
QNIKLFKECRNLANSLKLHDCSMGMSQDWKEAVEAGSTWLRLGSIIFGNRSY

Sequences:

>Translated_212_residues
MEISNYLQIKKELPLNVNLLAVSKGFGSQDIKIINDKGQNDFGESRFQEAIEKKLLLKDFKDIKWHFIGRIQSNKIRKIV
QNFDYIHSVDSYEKLLKISNIAFEEHKNPLIMLQVKLMDDPSKGGFNPKDLLGKWDEIKQLKSIKIKGLMTINPKGLNST
QNIKLFKECRNLANSLKLHDCSMGMSQDWKEAVEAGSTWLRLGSIIFGNRSY
>Mature_212_residues
MEISNYLQIKKELPLNVNLLAVSKGFGSQDIKIINDKGQNDFGESRFQEAIEKKLLLKDFKDIKWHFIGRIQSNKIRKIV
QNFDYIHSVDSYEKLLKISNIAFEEHKNPLIMLQVKLMDDPSKGGFNPKDLLGKWDEIKQLKSIKIKGLMTINPKGLNST
QNIKLFKECRNLANSLKLHDCSMGMSQDWKEAVEAGSTWLRLGSIIFGNRSY

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=221, Percent_Identity=33.0316742081448, Blast_Score=93, Evalue=2e-19,
Organism=Escherichia coli, GI1789321, Length=212, Percent_Identity=30.188679245283, Blast_Score=110, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI17533025, Length=216, Percent_Identity=33.7962962962963, Blast_Score=82, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6319435, Length=214, Percent_Identity=35.981308411215, Blast_Score=99, Evalue=3e-22,
Organism=Drosophila melanogaster, GI45550861, Length=224, Percent_Identity=35.2678571428571, Blast_Score=103, Evalue=8e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24403; Mature: 24403

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEISNYLQIKKELPLNVNLLAVSKGFGSQDIKIINDKGQNDFGESRFQEAIEKKLLLKDF
CCCHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
KDIKWHFIGRIQSNKIRKIVQNFDYIHSVDSYEKLLKISNIAFEEHKNPLIMLQVKLMDD
HHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECC
PSKGGFNPKDLLGKWDEIKQLKSIKIKGLMTINPKGLNSTQNIKLFKECRNLANSLKLHD
CCCCCCCHHHHHCCHHHHHHHHHEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCHHH
CSMGMSQDWKEAVEAGSTWLRLGSIIFGNRSY
HCCCCCHHHHHHHHCCHHHHHHHHHEECCCCC
>Mature Secondary Structure
MEISNYLQIKKELPLNVNLLAVSKGFGSQDIKIINDKGQNDFGESRFQEAIEKKLLLKDF
CCCHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
KDIKWHFIGRIQSNKIRKIVQNFDYIHSVDSYEKLLKISNIAFEEHKNPLIMLQVKLMDD
HHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECC
PSKGGFNPKDLLGKWDEIKQLKSIKIKGLMTINPKGLNSTQNIKLFKECRNLANSLKLHD
CCCCCCCHHHHHCCHHHHHHHHHEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCHHH
CSMGMSQDWKEAVEAGSTWLRLGSIIFGNRSY
HCCCCCHHHHHHHHCCHHHHHHHHHEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]