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The map label for this gene is ctpA [H]

Identifier: 123965591

GI number: 123965591

Start: 327803

End: 329092

Strand: Reverse

Name: ctpA [H]

Synonym: P9515_03561

Alternate gene names: 123965591

Gene position: 329092-327803 (Counterclockwise)

Preceding gene: 123965594

Following gene: 123965590

Centisome position: 19.31

GC content: 34.34

Gene sequence:

>1290_bases
ATGAATTCATCATTTAACAAATTTTTAATATTCAAAAGATGGATCATTATTATTATGATCTGCATTTTTTCTACCAATTT
TTTGCATATCCAAAGCGTTAATGCGCTTAGTGATAGCAGGCAATTTGTACTAGACGCATGGACTCTAATAAATGAAGGAT
ATTATGATCCAGAAAGGCTCGATGAAATCCAATGGAAGAGAATTAGACAAAAAACATTACAGAAACAAATTGAAACAAGT
GATGAGGCTTATTCCGCAATTGAAGATATGTTGAAGCCACTTGAAGATCCTTTCACAAGGATATTAAGGCCAAAAGATTA
TGAACTTCTAAAAACAAGTAATTTTGGGAGCGAAATTAATGGAGTAGGTCTTCAATTAGGAAAAGATGAGATGACTAAAA
AAATCAAAGTTATTTCAACATTGGCAGGTTCCCCTGCCGAAGAAGCAGGCATAATTAGTGGTGATGTAATTGATAAGGTT
GATGGAATATCTTCATCTGAATTAGGCCTTGCAAATACTGCTTCAAAGCTCAGAGGAGAATCCGGAACAAAAGTTCTTGT
CCAAATAACATCCATGTCTGATGAAATTAAAGAGATTGATTTAGAAAGAAGATCTGTTGACCTTAGACCAGTAAGGACAA
AAAGATTAAGAGATGATTCTCACACTATTGGTTACCTAAGAATAACTCAATTTAGTGAGAGTGTTCCAAAAAAAATTGAA
GAGGCTTTAGAGGAATTAAAAGATAAAGAAGTTGAAGGGATAATTCTTGATTTAAGAAATAACTCTGGTGGGCTAGTAAG
TTCTGGTATTGCAGTGGCAGATTCATTTTTAAGCGAGCAGCCTATCGTAGAAACAAAAGACAGGAATGGAATTAAGGATG
CAATAATCTCTCAAAAAAAGACTTATTTTGATGGTCCAATGGTAACTTTAGTAAATAAAGGGACCGCAAGCGCAAGTGAA
ATTCTTGCCGGATCCCTTCAAGATAACGAGAGATCAACTTTAATTGGTGAACAAACCTATGGGAAAGGACTTATCCAGTC
TCTTAAAAGTTTAGGAGATGATAGTGGTATAGCTATTACAGTTGCCAGTTATTTAACACCGAAAGGAAATAATATCCAAG
GTACGGGCATAACTCCAGATAAACTTTTAGATCTTCCAGAGGCTAGGGAATATGGCAATTCTGAAGATAAATGGGTTAAA
AACGCCGAAATATACCTAAACTCTTTGTTTGATAAAAATGAAGTCGAAGAAACTGTGAATCAATTAGAAAAAAAAGATCC
TGAACATTAA

Upstream 100 bases:

>100_bases
ACCAGTCGTAAACAGATGAGGAATTCGACATCCAAAAAAAAAAGCTTTGATATAAAGAGCTTACTTAAAATTCACTTACT
TGGTGTTAACACTTAACCCA

Downstream 100 bases:

>100_bases
AAAATATTTTTTATGTAAAGATCATTTAATAGTTATGAATAAAAAAAGAATTTTCCATGATCCAATACATAAAGAAATAA
TTATTGATTCCGATAAACCC

Product: carboxyl-terminal protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MNSSFNKFLIFKRWIIIIMICIFSTNFLHIQSVNALSDSRQFVLDAWTLINEGYYDPERLDEIQWKRIRQKTLQKQIETS
DEAYSAIEDMLKPLEDPFTRILRPKDYELLKTSNFGSEINGVGLQLGKDEMTKKIKVISTLAGSPAEEAGIISGDVIDKV
DGISSSELGLANTASKLRGESGTKVLVQITSMSDEIKEIDLERRSVDLRPVRTKRLRDDSHTIGYLRITQFSESVPKKIE
EALEELKDKEVEGIILDLRNNSGGLVSSGIAVADSFLSEQPIVETKDRNGIKDAIISQKKTYFDGPMVTLVNKGTASASE
ILAGSLQDNERSTLIGEQTYGKGLIQSLKSLGDDSGIAITVASYLTPKGNNIQGTGITPDKLLDLPEAREYGNSEDKWVK
NAEIYLNSLFDKNEVEETVNQLEKKDPEH

Sequences:

>Translated_429_residues
MNSSFNKFLIFKRWIIIIMICIFSTNFLHIQSVNALSDSRQFVLDAWTLINEGYYDPERLDEIQWKRIRQKTLQKQIETS
DEAYSAIEDMLKPLEDPFTRILRPKDYELLKTSNFGSEINGVGLQLGKDEMTKKIKVISTLAGSPAEEAGIISGDVIDKV
DGISSSELGLANTASKLRGESGTKVLVQITSMSDEIKEIDLERRSVDLRPVRTKRLRDDSHTIGYLRITQFSESVPKKIE
EALEELKDKEVEGIILDLRNNSGGLVSSGIAVADSFLSEQPIVETKDRNGIKDAIISQKKTYFDGPMVTLVNKGTASASE
ILAGSLQDNERSTLIGEQTYGKGLIQSLKSLGDDSGIAITVASYLTPKGNNIQGTGITPDKLLDLPEAREYGNSEDKWVK
NAEIYLNSLFDKNEVEETVNQLEKKDPEH
>Mature_429_residues
MNSSFNKFLIFKRWIIIIMICIFSTNFLHIQSVNALSDSRQFVLDAWTLINEGYYDPERLDEIQWKRIRQKTLQKQIETS
DEAYSAIEDMLKPLEDPFTRILRPKDYELLKTSNFGSEINGVGLQLGKDEMTKKIKVISTLAGSPAEEAGIISGDVIDKV
DGISSSELGLANTASKLRGESGTKVLVQITSMSDEIKEIDLERRSVDLRPVRTKRLRDDSHTIGYLRITQFSESVPKKIE
EALEELKDKEVEGIILDLRNNSGGLVSSGIAVADSFLSEQPIVETKDRNGIKDAIISQKKTYFDGPMVTLVNKGTASASE
ILAGSLQDNERSTLIGEQTYGKGLIQSLKSLGDDSGIAITVASYLTPKGNNIQGTGITPDKLLDLPEAREYGNSEDKWVK
NAEIYLNSLFDKNEVEETVNQLEKKDPEH

Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=332, Percent_Identity=27.710843373494, Blast_Score=120, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 47830; Mature: 47830

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSSFNKFLIFKRWIIIIMICIFSTNFLHIQSVNALSDSRQFVLDAWTLINEGYYDPERL
CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHCCHHHHHHHHHHHHCCCCCHHHH
DEIQWKRIRQKTLQKQIETSDEAYSAIEDMLKPLEDPFTRILRPKDYELLKTSNFGSEIN
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCC
GVGLQLGKDEMTKKIKVISTLAGSPAEEAGIISGDVIDKVDGISSSELGLANTASKLRGE
CCCEEECHHHHHHHHHHHHHHCCCCCHHCCCCCCHHHHHHCCCCCCCCCCHHHHHHHCCC
SGTKVLVQITSMSDEIKEIDLERRSVDLRPVRTKRLRDDSHTIGYLRITQFSESVPKKIE
CCCEEEEEEECCHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEEEEEEEHHHHHHHHHHH
EALEELKDKEVEGIILDLRNNSGGLVSSGIAVADSFLSEQPIVETKDRNGIKDAIISQKK
HHHHHHHCCCCCEEEEEEECCCCCEECCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCC
TYFDGPMVTLVNKGTASASEILAGSLQDNERSTLIGEQTYGKGLIQSLKSLGDDSGIAIT
CCCCCCEEEEEECCCCCHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCCCEEEE
VASYLTPKGNNIQGTGITPDKLLDLPEAREYGNSEDKWVKNAEIYLNSLFDKNEVEETVN
EEECCCCCCCCEECCCCCHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH
QLEKKDPEH
HHHHCCCCC
>Mature Secondary Structure
MNSSFNKFLIFKRWIIIIMICIFSTNFLHIQSVNALSDSRQFVLDAWTLINEGYYDPERL
CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHCCHHHHHHHHHHHHCCCCCHHHH
DEIQWKRIRQKTLQKQIETSDEAYSAIEDMLKPLEDPFTRILRPKDYELLKTSNFGSEIN
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCC
GVGLQLGKDEMTKKIKVISTLAGSPAEEAGIISGDVIDKVDGISSSELGLANTASKLRGE
CCCEEECHHHHHHHHHHHHHHCCCCCHHCCCCCCHHHHHHCCCCCCCCCCHHHHHHHCCC
SGTKVLVQITSMSDEIKEIDLERRSVDLRPVRTKRLRDDSHTIGYLRITQFSESVPKKIE
CCCEEEEEEECCHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEEEEEEEHHHHHHHHHHH
EALEELKDKEVEGIILDLRNNSGGLVSSGIAVADSFLSEQPIVETKDRNGIKDAIISQKK
HHHHHHHCCCCCEEEEEEECCCCCEECCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCC
TYFDGPMVTLVNKGTASASEILAGSLQDNERSTLIGEQTYGKGLIQSLKSLGDDSGIAIT
CCCCCCEEEEEECCCCCHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCCCEEEE
VASYLTPKGNNIQGTGITPDKLLDLPEAREYGNSEDKWVKNAEIYLNSLFDKNEVEETVN
EEECCCCCCCCEECCCCCHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH
QLEKKDPEH
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8034700; 8058761; 8590279; 8905231 [H]