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The map label for this gene is sufC [C]

Identifier: 123965316

GI number: 123965316

Start: 86495

End: 87277

Strand: Reverse

Name: sufC [C]

Synonym: P9515_00811

Alternate gene names: 123965316

Gene position: 87277-86495 (Counterclockwise)

Preceding gene: 123965317

Following gene: 123965315

Centisome position: 5.12

GC content: 33.08

Gene sequence:

>783_bases
ATGCAAATCAAATCAAAAGCATTAGATCCAATATTAGAAGTCAATAGTCTATTTGCATCTATAGAGAATCTTCCAATTTT
AAAAGGGGTGACAATTTCAGTAAAACCTGGAGAAATTCACGCAATAATGGGAAGAAATGGATGTGGCAAAAGTACTCTTT
CCAAGATTATTGCCGGTCATCCGTCATACCAAGTAACTAAAGGAGAAATAAAATTCAACGGAAATGATATTCAATCTTTA
GAACCAGAAGAGAGGGCTCAATCTGGTATCTTTCTCGGTTTTCAATATCCAATTGAAATTCCAGGAGTAAGTAATCTGGA
ATTTCTAAGAGTTGCAACAAATGCAAGAAGAAAATTTCTGAATAAAGAGGAACTCGATACCTTTGATTTTGAGGACTTAG
TAAAAGAAAAACTTGACTTAGTAAAAATGGATTCTGCGTTTTTATCAAGGAGTATTAATCAAGGTTTTTCAGGTGGGGAA
AAGAAAAGGAATGAAATATTGCAAATGGCATTATTAGAACCCAAAATAGCAATATTGGATGAAACTGACTCAGGTTTAGA
TATTGATGCTCTTAGAATCGTTGCTTCAGGTATTAAAAAGATATCTAATGAAAAAACAGGAATCATATTAATCACACACT
ACCAAAGATTATTAGATGAAATTCAACCCGATTATGTTCACGTCATGTCAGATGGTCAAATAATAAAAACCGGAGGAAGC
GATCTGGCCTTAGAACTGGAAAAATATGGTTATGAATGGACTGATAAATTTATAAAAGAGTGA

Upstream 100 bases:

>100_bases
GTATTTAATCAACTACCAATGGAATTTGCAGCTGAAGCCGACAAGCTACTTGCCCTCAAATTGGAAGGGTCGGTAGGTTA
AATTAATTTATTAAATTGTG

Downstream 100 bases:

>100_bases
TAGATAAATGCAAATTATTGAAGAGATCAAAAAAAATGAATTATTTAGTAACCCATCTGAGATTCAAAAATTTTGTCTCA
ACAAATTAAAATTAAATCCA

Product: ABC transporter, ATP binding component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MQIKSKALDPILEVNSLFASIENLPILKGVTISVKPGEIHAIMGRNGCGKSTLSKIIAGHPSYQVTKGEIKFNGNDIQSL
EPEERAQSGIFLGFQYPIEIPGVSNLEFLRVATNARRKFLNKEELDTFDFEDLVKEKLDLVKMDSAFLSRSINQGFSGGE
KKRNEILQMALLEPKIAILDETDSGLDIDALRIVASGIKKISNEKTGIILITHYQRLLDEIQPDYVHVMSDGQIIKTGGS
DLALELEKYGYEWTDKFIKE

Sequences:

>Translated_260_residues
MQIKSKALDPILEVNSLFASIENLPILKGVTISVKPGEIHAIMGRNGCGKSTLSKIIAGHPSYQVTKGEIKFNGNDIQSL
EPEERAQSGIFLGFQYPIEIPGVSNLEFLRVATNARRKFLNKEELDTFDFEDLVKEKLDLVKMDSAFLSRSINQGFSGGE
KKRNEILQMALLEPKIAILDETDSGLDIDALRIVASGIKKISNEKTGIILITHYQRLLDEIQPDYVHVMSDGQIIKTGGS
DLALELEKYGYEWTDKFIKE
>Mature_260_residues
MQIKSKALDPILEVNSLFASIENLPILKGVTISVKPGEIHAIMGRNGCGKSTLSKIIAGHPSYQVTKGEIKFNGNDIQSL
EPEERAQSGIFLGFQYPIEIPGVSNLEFLRVATNARRKFLNKEELDTFDFEDLVKEKLDLVKMDSAFLSRSINQGFSGGE
KKRNEILQMALLEPKIAILDETDSGLDIDALRIVASGIKKISNEKTGIILITHYQRLLDEIQPDYVHVMSDGQIIKTGGS
DLALELEKYGYEWTDKFIKE

Specific function: Unknown

COG id: COG0396

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI156105685, Length=217, Percent_Identity=26.2672811059908, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI42741659, Length=232, Percent_Identity=28.8793103448276, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI9961252, Length=232, Percent_Identity=28.8793103448276, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI4505771, Length=232, Percent_Identity=28.8793103448276, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI9961250, Length=232, Percent_Identity=28.8793103448276, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1787972, Length=243, Percent_Identity=55.5555555555556, Blast_Score=292, Evalue=1e-80,
Organism=Escherichia coli, GI1787792, Length=241, Percent_Identity=29.4605809128631, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1789891, Length=217, Percent_Identity=31.3364055299539, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790525, Length=233, Percent_Identity=28.755364806867, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI87081791, Length=182, Percent_Identity=30.2197802197802, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788761, Length=231, Percent_Identity=26.4069264069264, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787500, Length=228, Percent_Identity=28.0701754385965, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790190, Length=230, Percent_Identity=26.5217391304348, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787143, Length=226, Percent_Identity=25.2212389380531, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787370, Length=237, Percent_Identity=24.0506329113924, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789864, Length=237, Percent_Identity=27.4261603375527, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1789672, Length=220, Percent_Identity=26.3636363636364, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786654, Length=235, Percent_Identity=25.9574468085106, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787712, Length=208, Percent_Identity=30.2884615384615, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788472, Length=230, Percent_Identity=27.8260869565217, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787112, Length=216, Percent_Identity=30.0925925925926, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI48994997, Length=265, Percent_Identity=24.1509433962264, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI87081709, Length=216, Percent_Identity=26.3888888888889, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI87082267, Length=162, Percent_Identity=29.0123456790123, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1786319, Length=190, Percent_Identity=27.8947368421053, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1786398, Length=220, Percent_Identity=30, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71996809, Length=216, Percent_Identity=26.8518518518519, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17558664, Length=217, Percent_Identity=26.7281105990783, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI25146777, Length=249, Percent_Identity=25.7028112449799, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193202349, Length=245, Percent_Identity=26.530612244898, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71992285, Length=234, Percent_Identity=26.4957264957265, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193211017, Length=217, Percent_Identity=28.110599078341, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193211015, Length=217, Percent_Identity=28.110599078341, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI212646699, Length=218, Percent_Identity=26.1467889908257, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17565938, Length=231, Percent_Identity=25.1082251082251, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17569145, Length=197, Percent_Identity=30.4568527918782, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17543740, Length=224, Percent_Identity=27.2321428571429, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI193209708, Length=219, Percent_Identity=28.310502283105, Blast_Score=64, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6324498, Length=255, Percent_Identity=27.0588235294118, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28574744, Length=232, Percent_Identity=27.5862068965517, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI19920532, Length=214, Percent_Identity=27.5700934579439, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24580930, Length=214, Percent_Identity=27.5700934579439, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR010230 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 29014; Mature: 29014

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIKSKALDPILEVNSLFASIENLPILKGVTISVKPGEIHAIMGRNGCGKSTLSKIIAGH
CCCCHHHHHHHHHHHHHHHHHHCCCEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
PSYQVTKGEIKFNGNDIQSLEPEERAQSGIFLGFQYPIEIPGVSNLEFLRVATNARRKFL
CCCEEEECEEEECCCCCCCCCHHHHHCCCEEEEEECCEECCCCCCCHHHHHHHHHHHHHC
NKEELDTFDFEDLVKEKLDLVKMDSAFLSRSINQGFSGGEKKRNEILQMALLEPKIAILD
CHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEE
ETDSGLDIDALRIVASGIKKISNEKTGIILITHYQRLLDEIQPDYVHVMSDGQIIKTGGS
CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCCEEEEECCCEEEEECCC
DLALELEKYGYEWTDKFIKE
CEEEEHHHCCCHHHHHHHCC
>Mature Secondary Structure
MQIKSKALDPILEVNSLFASIENLPILKGVTISVKPGEIHAIMGRNGCGKSTLSKIIAGH
CCCCHHHHHHHHHHHHHHHHHHCCCEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
PSYQVTKGEIKFNGNDIQSLEPEERAQSGIFLGFQYPIEIPGVSNLEFLRVATNARRKFL
CCCEEEECEEEECCCCCCCCCHHHHHCCCEEEEEECCEECCCCCCCHHHHHHHHHHHHHC
NKEELDTFDFEDLVKEKLDLVKMDSAFLSRSINQGFSGGEKKRNEILQMALLEPKIAILD
CHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEE
ETDSGLDIDALRIVASGIKKISNEKTGIILITHYQRLLDEIQPDYVHVMSDGQIIKTGGS
CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCCEEEEECCCEEEEECCC
DLALELEKYGYEWTDKFIKE
CEEEEHHHCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]