| Definition | Prochlorococcus marinus str. MIT 9515, complete genome. |
|---|---|
| Accession | NC_008817 |
| Length | 1,704,176 |
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The map label for this gene is 123965303
Identifier: 123965303
GI number: 123965303
Start: 73778
End: 75055
Strand: Reverse
Name: 123965303
Synonym: P9515_00681
Alternate gene names: NA
Gene position: 75055-73778 (Counterclockwise)
Preceding gene: 123965305
Following gene: 123965298
Centisome position: 4.4
GC content: 28.25
Gene sequence:
>1278_bases ATGACTGCAATGAAAAAAAAATCAATTGCAGTCGTAATTATATCCAATGGGCCAGGAGAATTATCAACTTGGGTAAAGCC AGTAGTTGATTATCTAAATCAGATAAATAATTGTTCTAAAGATATTGAAAAATTGAATTTCTCCTTAAGATTAGTTCTTG TACCTTGTCCTAATGCTACTGGGAAAGAATATTCAGTTGCCAAATCATGGAAAATATTTGAATTAATTACAAAATCAAAG AGTTTTTGGAAATTATTAATCAGGCCCTCAAAATTTGCAAAATGGCCTCAAAAAGGGATAGTTATTTTTCTTGGAGGTGA TCAGTTTTGGAGTGTTTTACTAGCAAAAAGATTAGGTTATATGAATATCACATATGCCGAATGGATTTCAAGATGGCCAC GTTGGAACAACATAATTGCAGCAATGAATAAAAACGTTAAGAAAAATATTCCTTCAAACCATAGATATAAATGTAAAGTA GTTGGCGATTTAATGGCAGACATCAAAAAAAACAAATCAGATTCTTTGAATACTGAAAAAAAGGATTGGATTGCATTATT ACCAGGTTCTAAAAAACCAAAGCTATCTGTTGGTATTCCGTACTTTCTTGAAATAGCTGATCATATTCATAAAAATAATA AAAATATTAATTTAATTATTCCTATCGCACCAACTACAAGTACAAGCGAATATTTATACTTTCAAAGTTACAAGAATCCT ATTACAAAACATTATTCATCGAGAATAAAACGAATTAGGAATATTAAAAATTCTATTTTTGATTCTGTCATTGAAACCTC AAATAATACAAAAATTTATTTAATTAATAAACACCCTTGCTATGAAGTACTAAAAAAATGTGATCTCGCAATTACCACAG TTGGAGCAAATACTGCTGAATTAGCTTCACTTGCTTTACCTATGATAGTTATTCTCCCTACTCAACATTTAAATGTAATG AATGCTTGGGACGGTATCTTAGGAATAATTGGGAAAATCTCTTTCATCAATAAATTCTTTACATTTATAATTAAAAATTG GTATTTAAAGAAAAAAAAATTTTTTGCATGGCCAAATATAAAAGCTAATAAGTTAATTATTCCAGAAAGGATCGGGAACA TTTCACCCAGACAAATCGCAAATGAAGCTCTATTTCTAATAAAAAATAAAAAATATTTAAAAGAGCAAAAAAATAATTTA ACAAAACATCGAGGCAAAACTGGTGCAGTTAAAAAATTAGCTTATATTATTTTTAATTCAATCAAAAAACTCAGTTAA
Upstream 100 bases:
>100_bases TTGCGGACGTGGCGGAATTGGTAGACGCGCACGTCTAAGGAGCGTGTGGCTTAGGCCTTGCGAGTTCAAGTCTCGCCGTC CGCATTTCATGTGATTAGGA
Downstream 100 bases:
>100_bases ATAAAAAGTAATTACCAAGGATCATCAATTTCAAAAGACTCTGATTGATCATTATCTATGACTATTTTTTTGTCTTCAAC AGGTTCAATATCTAAAGGTT
Product: lipid A disaccharide synthetase-like protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 425; Mature: 424
Protein sequence:
>425_residues MTAMKKKSIAVVIISNGPGELSTWVKPVVDYLNQINNCSKDIEKLNFSLRLVLVPCPNATGKEYSVAKSWKIFELITKSK SFWKLLIRPSKFAKWPQKGIVIFLGGDQFWSVLLAKRLGYMNITYAEWISRWPRWNNIIAAMNKNVKKNIPSNHRYKCKV VGDLMADIKKNKSDSLNTEKKDWIALLPGSKKPKLSVGIPYFLEIADHIHKNNKNINLIIPIAPTTSTSEYLYFQSYKNP ITKHYSSRIKRIRNIKNSIFDSVIETSNNTKIYLINKHPCYEVLKKCDLAITTVGANTAELASLALPMIVILPTQHLNVM NAWDGILGIIGKISFINKFFTFIIKNWYLKKKKFFAWPNIKANKLIIPERIGNISPRQIANEALFLIKNKKYLKEQKNNL TKHRGKTGAVKKLAYIIFNSIKKLS
Sequences:
>Translated_425_residues MTAMKKKSIAVVIISNGPGELSTWVKPVVDYLNQINNCSKDIEKLNFSLRLVLVPCPNATGKEYSVAKSWKIFELITKSK SFWKLLIRPSKFAKWPQKGIVIFLGGDQFWSVLLAKRLGYMNITYAEWISRWPRWNNIIAAMNKNVKKNIPSNHRYKCKV VGDLMADIKKNKSDSLNTEKKDWIALLPGSKKPKLSVGIPYFLEIADHIHKNNKNINLIIPIAPTTSTSEYLYFQSYKNP ITKHYSSRIKRIRNIKNSIFDSVIETSNNTKIYLINKHPCYEVLKKCDLAITTVGANTAELASLALPMIVILPTQHLNVM NAWDGILGIIGKISFINKFFTFIIKNWYLKKKKFFAWPNIKANKLIIPERIGNISPRQIANEALFLIKNKKYLKEQKNNL TKHRGKTGAVKKLAYIIFNSIKKLS >Mature_424_residues TAMKKKSIAVVIISNGPGELSTWVKPVVDYLNQINNCSKDIEKLNFSLRLVLVPCPNATGKEYSVAKSWKIFELITKSKS FWKLLIRPSKFAKWPQKGIVIFLGGDQFWSVLLAKRLGYMNITYAEWISRWPRWNNIIAAMNKNVKKNIPSNHRYKCKVV GDLMADIKKNKSDSLNTEKKDWIALLPGSKKPKLSVGIPYFLEIADHIHKNNKNINLIIPIAPTTSTSEYLYFQSYKNPI TKHYSSRIKRIRNIKNSIFDSVIETSNNTKIYLINKHPCYEVLKKCDLAITTVGANTAELASLALPMIVILPTQHLNVMN AWDGILGIIGKISFINKFFTFIIKNWYLKKKKFFAWPNIKANKLIIPERIGNISPRQIANEALFLIKNKKYLKEQKNNLT KHRGKTGAVKKLAYIIFNSIKKLS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48729; Mature: 48598
Theoretical pI: Translated: 10.74; Mature: 10.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAMKKKSIAVVIISNGPGELSTWVKPVVDYLNQINNCSKDIEKLNFSLRLVLVPCPNAT CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCC GKEYSVAKSWKIFELITKSKSFWKLLIRPSKFAKWPQKGIVIFLGGDQFWSVLLAKRLGY CCCCCHHHCHHHHHHHHCCHHHHHEEECCHHHHCCCCCCEEEEECCHHHHHHHHHHHCCC MNITYAEWISRWPRWNNIIAAMNKNVKKNIPSNHRYKCKVVGDLMADIKKNKSDSLNTEK CEEEHHHHHHHCCCCCHHHHHHCCCHHHCCCCCCCEEEEEHHHHHHHHHCCCCCCCCCCC KDWIALLPGSKKPKLSVGIPYFLEIADHIHKNNKNINLIIPIAPTTSTSEYLYFQSYKNP CCEEEECCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEEHHCCH ITKHYSSRIKRIRNIKNSIFDSVIETSNNTKIYLINKHPCYEVLKKCDLAITTVGANTAE HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHCCEEEEEECCCHHH LASLALPMIVILPTQHLNVMNAWDGILGIIGKISFINKFFTFIIKNWYLKKKKFFAWPNI HHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEECCCC KANKLIIPERIGNISPRQIANEALFLIKNKKYLKEQKNNLTKHRGKTGAVKKLAYIIFNS CCCEEECHHHHCCCCHHHHHHHHEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH IKKLS HHHCC >Mature Secondary Structure TAMKKKSIAVVIISNGPGELSTWVKPVVDYLNQINNCSKDIEKLNFSLRLVLVPCPNAT CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCC GKEYSVAKSWKIFELITKSKSFWKLLIRPSKFAKWPQKGIVIFLGGDQFWSVLLAKRLGY CCCCCHHHCHHHHHHHHCCHHHHHEEECCHHHHCCCCCCEEEEECCHHHHHHHHHHHCCC MNITYAEWISRWPRWNNIIAAMNKNVKKNIPSNHRYKCKVVGDLMADIKKNKSDSLNTEK CEEEHHHHHHHCCCCCHHHHHHCCCHHHCCCCCCCEEEEEHHHHHHHHHCCCCCCCCCCC KDWIALLPGSKKPKLSVGIPYFLEIADHIHKNNKNINLIIPIAPTTSTSEYLYFQSYKNP CCEEEECCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEEHHCCH ITKHYSSRIKRIRNIKNSIFDSVIETSNNTKIYLINKHPCYEVLKKCDLAITTVGANTAE HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHCCEEEEEECCCHHH LASLALPMIVILPTQHLNVMNAWDGILGIIGKISFINKFFTFIIKNWYLKKKKFFAWPNI HHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEECCCC KANKLIIPERIGNISPRQIANEALFLIKNKKYLKEQKNNLTKHRGKTGAVKKLAYIIFNS CCCEEECHHHHCCCCHHHHHHHHEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH IKKLS HHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA