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The map label for this gene is rimM

Identifier: 123969347

GI number: 123969347

Start: 1547715

End: 1548254

Strand: Direct

Name: rimM

Synonym: A9601_18151

Alternate gene names: 123969347

Gene position: 1547715-1548254 (Clockwise)

Preceding gene: 123969345

Following gene: 123969350

Centisome position: 92.68

GC content: 25.0

Gene sequence:

>540_bases
ATGATAATTAAAAATGAATGGTTGATTGTTGGATTTATAACATCATGTCATGGAATTAATGGTCAGTTAAAAGTTAAATC
TCTAAGTGATTTTGAAGAAAGATTTTTAAAACCTGGAATGAGATGGTTACAAAAAGAAAGTGAACATCCTTCAAAAATAG
AACTTATATCTGGTTTCAAACAGCCTGGTAAAGAAATCTTTATAGTTAAGTTCAAAGGAATAAATACAAGAAATCATGCA
GAGCAACTTAAAAAATGTAAACTTCTTGTAAAAAGTGATAAACTACCTAAGCTAAAAAAGGAAGAATTCCATTTGTTAGA
ACTTATAGATCTGGAGGTCAAGACTTTAGAAAATGATGAATTAAAAATAATTGGGAAAGTTATTAATTTAGAAAATGAAA
AAAATAATTTACTTATTATTGAACTATTTAAAAATCAAAAAAAAGTTCTCATTCCATTTGTTAAAGAAATAGTCCCATTA
GTAGATATTAAAAATAATTTTTTAATCATCAATCCTCCAAATGGACTTTTAGAACTATAA

Upstream 100 bases:

>100_bases
TCCTCTGTATATAGAGTCATTGTCTTTTACAATAACAAAAGAACCAGGGAGTATTGGTTTTGCAGATAATTCCATAAAGT
AATCCTTCTAGTACAATATT

Downstream 100 bases:

>100_bases
ATTTAAAATACAAATTTTTAAGAAAATAATTATTCCACAGTTACACTTTTAGCTAAATTTCTTGGTTGATCCACATCAAG
GCCTCTATGAGCTGCGATAT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MIIKNEWLIVGFITSCHGINGQLKVKSLSDFEERFLKPGMRWLQKESEHPSKIELISGFKQPGKEIFIVKFKGINTRNHA
EQLKKCKLLVKSDKLPKLKKEEFHLLELIDLEVKTLENDELKIIGKVINLENEKNNLLIIELFKNQKKVLIPFVKEIVPL
VDIKNNFLIINPPNGLLEL

Sequences:

>Translated_179_residues
MIIKNEWLIVGFITSCHGINGQLKVKSLSDFEERFLKPGMRWLQKESEHPSKIELISGFKQPGKEIFIVKFKGINTRNHA
EQLKKCKLLVKSDKLPKLKKEEFHLLELIDLEVKTLENDELKIIGKVINLENEKNNLLIIELFKNQKKVLIPFVKEIVPL
VDIKNNFLIINPPNGLLEL
>Mature_179_residues
MIIKNEWLIVGFITSCHGINGQLKVKSLSDFEERFLKPGMRWLQKESEHPSKIELISGFKQPGKEIFIVKFKGINTRNHA
EQLKKCKLLVKSDKLPKLKKEEFHLLELIDLEVKTLENDELKIIGKVINLENEKNNLLIIELFKNQKKVLIPFVKEIVPL
VDIKNNFLIINPPNGLLEL

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=182, Percent_Identity=25.8241758241758, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_PROMS (A2BTI7)

Other databases:

- EMBL:   CP000551
- RefSeq:   YP_001010205.1
- ProteinModelPortal:   A2BTI7
- STRING:   A2BTI7
- GeneID:   4718552
- GenomeReviews:   CP000551_GR
- KEGG:   pmb:A9601_18151
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   TSCHGIN
- PhylomeDB:   A2BTI7
- ProtClustDB:   PRK00122
- BioCyc:   PMAR146891:A9601_18151-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 20773; Mature: 20773

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIKNEWLIVGFITSCHGINGQLKVKSLSDFEERFLKPGMRWLQKESEHPSKIELISGFK
CEECCCEEEEEEEECCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHCC
QPGKEIFIVKFKGINTRNHAEQLKKCKLLVKSDKLPKLKKEEFHLLELIDLEVKTLENDE
CCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEHHEECEEEECCCCC
LKIIGKVINLENEKNNLLIIELFKNQKKVLIPFVKEIVPLVDIKNNFLIINPPNGLLEL
EEEEEEEEECCCCCCCEEEEEEECCCCEEEHHHHHHHHHHEECCCCEEEEECCCCCCCC
>Mature Secondary Structure
MIIKNEWLIVGFITSCHGINGQLKVKSLSDFEERFLKPGMRWLQKESEHPSKIELISGFK
CEECCCEEEEEEEECCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHCC
QPGKEIFIVKFKGINTRNHAEQLKKCKLLVKSDKLPKLKKEEFHLLELIDLEVKTLENDE
CCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEHHEECEEEECCCCC
LKIIGKVINLENEKNNLLIIELFKNQKKVLIPFVKEIVPLVDIKNNFLIINPPNGLLEL
EEEEEEEEECCCCCCCEEEEEEECCCCEEEHHHHHHHHHHEECCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA