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The map label for this gene is recF [H]

Identifier: 123969312

GI number: 123969312

Start: 1511899

End: 1512792

Strand: Reverse

Name: recF [H]

Synonym: A9601_17801

Alternate gene names: 123969312

Gene position: 1512792-1511899 (Counterclockwise)

Preceding gene: 123969313

Following gene: 123969311

Centisome position: 90.59

GC content: 29.75

Gene sequence:

>894_bases
ATGGCTGTAGTCAAAGGACAGATAAATTTTAAAGATGATTTAAAGTTAAATTTATTCCGCAAAGGGCCTAAAAGAATTTA
CGTCAATGAAACAATCTTGAAAAAACAGAGTGAAATAAAGAATTATATTCGGAGTGTATGTTTCTGCTCCAATGATATCG
ATATTGTTAGAAGTGAACCAAGTTATCGAAGAATATGGATTGATAAAGTCGTATCTCAGCTTGAACCAGTATATTTAGAT
CTGATAAGTAGATTTAATAGGATTTTAAAGCAAAGAAGTCATTTTTGGCGTTCCGAAAGTTTTTTAAAAACTCAATCTTC
AGATATTGTTGAAAGCTTTGATATTCAAATGTCAATAATAAGTACAAGAATTTTTAGGCGCAGAAGAAGGGCATTATTAA
AAATAAAACCATATGTTGAATATTGGCATAATCATTTAAGTAAATCTAAAGAGCAAATAGATATAAATTATCTTTCCGGG
ATACAAAATATAAGTCCAGAAGAAGAAGAAGAAGAAGTTATTAGTAAAAAAATAGTAGAACAACTCTTAAATCAGCGTTC
AATAGAAGCATTGACAGGTAAATGTAATTTTGGACCTCATCGTGATGATGTTGAGTTTCTAATTAATAATGTTTCAGTTA
GAAAATATGGTTCTTCAGGACAGCAAAGGACTTTTATCTTGGCTTTAAAGATGGCTGAACTCGATTTATTAACTAAAACA
TTAAATGTTCCTCCAATACTTATATTGGATGATGTTTTGGCGGAATTAGATTTAACCAGGCAAAATTTGTTATTAAATTC
TGTTGGCAAAGATAGTCAATGTTTTATAAGTGCGACACATTTGGATAAATTTAATCAGTCTTTCGTAGGCTCTTCACAAA
TGATTCACTTATAA

Upstream 100 bases:

>100_bases
TATTGGGAAGTCAAATTTACTTGAATCGGTTGAATTTTTAAGTCAACTAAAATCTAATAGAGCATTAAGCGATAAGGATT
TAATTGAGAATGACAGTGAT

Downstream 100 bases:

>100_bases
TTTCAAAAAAGCATGATTTTTAGCTAATCTTAATTTCATATAAATTCTTAAATGGAAACCTACAAAAAAAGTCACATTTT
AAGTTCGTTAAGTGATGAGC

Product: putative DNA repair and genetic recombination protein RecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MAVVKGQINFKDDLKLNLFRKGPKRIYVNETILKKQSEIKNYIRSVCFCSNDIDIVRSEPSYRRIWIDKVVSQLEPVYLD
LISRFNRILKQRSHFWRSESFLKTQSSDIVESFDIQMSIISTRIFRRRRRALLKIKPYVEYWHNHLSKSKEQIDINYLSG
IQNISPEEEEEEVISKKIVEQLLNQRSIEALTGKCNFGPHRDDVEFLINNVSVRKYGSSGQQRTFILALKMAELDLLTKT
LNVPPILILDDVLAELDLTRQNLLLNSVGKDSQCFISATHLDKFNQSFVGSSQMIHL

Sequences:

>Translated_297_residues
MAVVKGQINFKDDLKLNLFRKGPKRIYVNETILKKQSEIKNYIRSVCFCSNDIDIVRSEPSYRRIWIDKVVSQLEPVYLD
LISRFNRILKQRSHFWRSESFLKTQSSDIVESFDIQMSIISTRIFRRRRRALLKIKPYVEYWHNHLSKSKEQIDINYLSG
IQNISPEEEEEEVISKKIVEQLLNQRSIEALTGKCNFGPHRDDVEFLINNVSVRKYGSSGQQRTFILALKMAELDLLTKT
LNVPPILILDDVLAELDLTRQNLLLNSVGKDSQCFISATHLDKFNQSFVGSSQMIHL
>Mature_296_residues
AVVKGQINFKDDLKLNLFRKGPKRIYVNETILKKQSEIKNYIRSVCFCSNDIDIVRSEPSYRRIWIDKVVSQLEPVYLDL
ISRFNRILKQRSHFWRSESFLKTQSSDIVESFDIQMSIISTRIFRRRRRALLKIKPYVEYWHNHLSKSKEQIDINYLSGI
QNISPEEEEEEVISKKIVEQLLNQRSIEALTGKCNFGPHRDDVEFLINNVSVRKYGSSGQQRTFILALKMAELDLLTKTL
NVPPILILDDVLAELDLTRQNLLLNSVGKDSQCFISATHLDKFNQSFVGSSQMIHL

Specific function: The recF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP [H]

COG id: COG1195

COG function: function code L; Recombinational DNA repair ATPase (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001238
- InterPro:   IPR018078 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34654; Mature: 34522

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: PS00617 RECF_1 ; PS00618 RECF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVVKGQINFKDDLKLNLFRKGPKRIYVNETILKKQSEIKNYIRSVCFCSNDIDIVRSEP
CCEEECCCCCCCCCEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
SYRRIWIDKVVSQLEPVYLDLISRFNRILKQRSHFWRSESFLKTQSSDIVESFDIQMSII
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHHH
STRIFRRRRRALLKIKPYVEYWHNHLSKSKEQIDINYLSGIQNISPEEEEEEVISKKIVE
HHHHHHHHHHHHHEEHHHHHHHHHHHHCCHHHEEHHHHHCCCCCCCCHHHHHHHHHHHHH
QLLNQRSIEALTGKCNFGPHRDDVEFLINNVSVRKYGSSGQQRTFILALKMAELDLLTKT
HHHCCHHHHHHHCCCCCCCCCCHHHHHHHCCCEEECCCCCCCEEEEEEEHHHHHHHHHHH
LNVPPILILDDVLAELDLTRQNLLLNSVGKDSQCFISATHLDKFNQSFVGSSQMIHL
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHCCCCCEEEC
>Mature Secondary Structure 
AVVKGQINFKDDLKLNLFRKGPKRIYVNETILKKQSEIKNYIRSVCFCSNDIDIVRSEP
CEEECCCCCCCCCEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
SYRRIWIDKVVSQLEPVYLDLISRFNRILKQRSHFWRSESFLKTQSSDIVESFDIQMSII
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHHH
STRIFRRRRRALLKIKPYVEYWHNHLSKSKEQIDINYLSGIQNISPEEEEEEVISKKIVE
HHHHHHHHHHHHHEEHHHHHHHHHHHHCCHHHEEHHHHHCCCCCCCCHHHHHHHHHHHHH
QLLNQRSIEALTGKCNFGPHRDDVEFLINNVSVRKYGSSGQQRTFILALKMAELDLLTKT
HHHCCHHHHHHHCCCCCCCCCCHHHHHHHCCCEEECCCCCCCEEEEEEEHHHHHHHHHHH
LNVPPILILDDVLAELDLTRQNLLLNSVGKDSQCFISATHLDKFNQSFVGSSQMIHL
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12917641 [H]