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The map label for this gene is secY [H]

Identifier: 123969279

GI number: 123969279

Start: 1488506

End: 1489825

Strand: Reverse

Name: secY [H]

Synonym: A9601_17471

Alternate gene names: 123969279

Gene position: 1489825-1488506 (Counterclockwise)

Preceding gene: 123969280

Following gene: 123969278

Centisome position: 89.22

GC content: 34.7

Gene sequence:

>1320_bases
ATGTTTGTCAACAAAAGTAGAAATCCTAGCGCTTCTGAAATACTTTCCCAATTATTTTTAAATAAAGAGTTAAGGAGTAG
AGTTTTAACTACTTTAGGCCTTCTGCTTTTAGTAAGACTTGGTATATATATCCCTATGCCTAGTATTGATAGGGTCGCTT
TTAAAAGTTTTATAGATCAAGGAGGGCAATTAATAGGTTTTTTAGATATTTTTACAGGAGGAGGAATTTCAACCTTAGGA
ATATTCGCATTAGGCATACTACCCTTTATTAACGCATCAATTATTATTCAGCTTCTCACAGCTTCATTGCCTTTTCTTGA
AGATTTGCAAAAAAATGAAGGAGAAGCAGGAAGAAGAAAAATTGCTCAAATAACTAGATATGTTTCTTTAGGATGGGGTT
TTTTACAAAGTATAATTTTTTCCTTAATTCTTAGACAATATGCTATCGAGGGGATAAGTGAAACCACATTTGTTTTACAA
ACCTCCATTGCCTTAGTTACTGGTTCAATGTTAGTAATGTGGTTTAGTGAAATTATTACGGAGAAAGGGATAGGTCAAGG
TGCTTCACTGGTGATTTTTTTGAATATTGTTTCGACTTTACCTAAGGCTCTAAGTTCAACCATTGAAAAAGCTCAAACTG
GCGATAGAGGAGATGTTTTAGGTATAGCAGTTTTACTTGGAGTATTTTTACTGACAATTGTTGGGATAATTTTTGTTCAA
GAGGGAGCAAGACGCATTCCTATTGTTAGTGCAAAAAGGCAGATAGGAAATACAACACTACTTCCTACAAGGCAAAGTTA
TTTACCTTTGAAATTAAATGCAGGAGGAGTAATGCCTATTATATTTGCATCTGCTTTAATCTTTTTACCTATAACTATTG
CAAATGTTACGGGCAATCCAGTCTTAATCAAGTTAGCAAGTAGTTTAAATCCAGGATCTTCTAATCCATGGCCATATGCT
CTTACATTCTTCTCCTTGATTTTGGGGTTCTCGTATTTTTATGCATCTCTTACTATCAATCCTGTTGATGTAGCTTCAAA
TTTAAAGAAAGGAGGAGTAGCGATACCAGGAGTTAGACCAGGAACTAATACAGCAAATTACCTTTCAGGTATACAAAATA
GGTTGACATTATTGGGAGGATTGTTTCTGGGTTCGGTAGCAATAATCCCAGCAGCAGTAGAAAGAGCTACAAATGTTCAG
ACCTTTCAAGGTTTAGGAGCAACTTCTTTGCTAATTCTTGTGGGTGTCGCTATAGATACTGCTAAGCAAATTCAAACTTA
TGTTATTTCACAAAGGTATGAGGGACTAATTAACAATTAA

Upstream 100 bases:

>100_bases
CATTTACAAAAGTTGCAAAACAAAAAATTGAGGACGCAGGCGGATCCTGCGAGCTTATAAATAATAAATAAATTTAGTAA
AAATTTAGGTAAGCTTTAAA

Downstream 100 bases:

>100_bases
TGAAGAAGCATCTACTATTTTTAGGAGCTCCTGGAGCAGGGAAAGGGACTCAAGCGGAATTGTTGAGTCAAACTACTTCT
TACTTACATCTTTCTACTGG

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MFVNKSRNPSASEILSQLFLNKELRSRVLTTLGLLLLVRLGIYIPMPSIDRVAFKSFIDQGGQLIGFLDIFTGGGISTLG
IFALGILPFINASIIIQLLTASLPFLEDLQKNEGEAGRRKIAQITRYVSLGWGFLQSIIFSLILRQYAIEGISETTFVLQ
TSIALVTGSMLVMWFSEIITEKGIGQGASLVIFLNIVSTLPKALSSTIEKAQTGDRGDVLGIAVLLGVFLLTIVGIIFVQ
EGARRIPIVSAKRQIGNTTLLPTRQSYLPLKLNAGGVMPIIFASALIFLPITIANVTGNPVLIKLASSLNPGSSNPWPYA
LTFFSLILGFSYFYASLTINPVDVASNLKKGGVAIPGVRPGTNTANYLSGIQNRLTLLGGLFLGSVAIIPAAVERATNVQ
TFQGLGATSLLILVGVAIDTAKQIQTYVISQRYEGLINN

Sequences:

>Translated_439_residues
MFVNKSRNPSASEILSQLFLNKELRSRVLTTLGLLLLVRLGIYIPMPSIDRVAFKSFIDQGGQLIGFLDIFTGGGISTLG
IFALGILPFINASIIIQLLTASLPFLEDLQKNEGEAGRRKIAQITRYVSLGWGFLQSIIFSLILRQYAIEGISETTFVLQ
TSIALVTGSMLVMWFSEIITEKGIGQGASLVIFLNIVSTLPKALSSTIEKAQTGDRGDVLGIAVLLGVFLLTIVGIIFVQ
EGARRIPIVSAKRQIGNTTLLPTRQSYLPLKLNAGGVMPIIFASALIFLPITIANVTGNPVLIKLASSLNPGSSNPWPYA
LTFFSLILGFSYFYASLTINPVDVASNLKKGGVAIPGVRPGTNTANYLSGIQNRLTLLGGLFLGSVAIIPAAVERATNVQ
TFQGLGATSLLILVGVAIDTAKQIQTYVISQRYEGLINN
>Mature_439_residues
MFVNKSRNPSASEILSQLFLNKELRSRVLTTLGLLLLVRLGIYIPMPSIDRVAFKSFIDQGGQLIGFLDIFTGGGISTLG
IFALGILPFINASIIIQLLTASLPFLEDLQKNEGEAGRRKIAQITRYVSLGWGFLQSIIFSLILRQYAIEGISETTFVLQ
TSIALVTGSMLVMWFSEIITEKGIGQGASLVIFLNIVSTLPKALSSTIEKAQTGDRGDVLGIAVLLGVFLLTIVGIIFVQ
EGARRIPIVSAKRQIGNTTLLPTRQSYLPLKLNAGGVMPIIFASALIFLPITIANVTGNPVLIKLASSLNPGSSNPWPYA
LTFFSLILGFSYFYASLTINPVDVASNLKKGGVAIPGVRPGTNTANYLSGIQNRLTLLGGLFLGSVAIIPAAVERATNVQ
TFQGLGATSLLILVGVAIDTAKQIQTYVISQRYEGLINN

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=426, Percent_Identity=40.3755868544601, Blast_Score=259, Evalue=3e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 47076; Mature: 47076

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: PS00755 SECY_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1420358 [H]