| Definition | Prochlorococcus marinus str. AS9601, complete genome. |
|---|---|
| Accession | NC_008816 |
| Length | 1,669,886 |
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The map label for this gene is 123968979
Identifier: 123968979
GI number: 123968979
Start: 1231630
End: 1232319
Strand: Direct
Name: 123968979
Synonym: A9601_14471
Alternate gene names: NA
Gene position: 1231630-1232319 (Clockwise)
Preceding gene: 123968978
Following gene: 123968980
Centisome position: 73.76
GC content: 25.07
Gene sequence:
>690_bases ATGTCATATATATCAGAGCCAAGTTTTGAAGGTAGTTTTGATAGATATATATTTAAAAAAAACGACAACAAATTTATTAA AGAATTAAGAAATGATATTTCCAATTGTCTTAATATTAAAAAATTAGAAGAATTGCATTTACAGGTTGAATCAGAAAAAA TAAATGAATTAAGAATAAAGGCTTTTAAATCTATAAACAAAATTAGTGAATGGAAGAAAAAAATTCTAGATCTAATTAGT CCTGAAATTTATGAGATATTAGGACTTGATTTAGCTATTCAAAAAAACTTAAATCTTTCTATTCAAATGCCCGGAGAAGT AAATTCCATATTAGAAAAACATGTAGATTATAGAACTGGAGATTCTCCATTTCAGAGAGTTGTCTGGATTCCAGTTACTA ATTCATATGATAGCAATTCTATTTTTATGCTTGATAAAGAATCAAACTATAAACCAATTAATATAAATTATGGAGAATTT TTAGTTTTTGATCCTAATACTGAACATGGAAATATCGTAAATAAAACTGATAAAACTAGAGTATCAATTAACGTTAGGGT TAAAAACTGGTTTTCTCCAGATTTATCAAATTTTGCTCCTGATAGACAATTTGGAGTTTATTATGAAGACTTATGTTTTT CAGAATCAACAATTAGAGCTTTTGAAATATTAGATAAAGAAAATGAATAG
Upstream 100 bases:
>100_bases AGCTCGAGAATTATCGCGACGTTGGATATGCTGGAAGAAGTTACGTTTTATATAAATAAAATAAATATTACTTTATAATT ATTTTACTGAATTTAAAAAA
Downstream 100 bases:
>100_bases AAAATCTTGCGTTTATGTTATCCCTTTCAAAGTAAATAATTGGCAATTACCTATAAGAGTTCAAGTTTCATATGCAAGAG ACTATTCAAAAAGAAAAAAT
Product: 2OG-Fe(II) dioxygenase superfamily protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 229; Mature: 228
Protein sequence:
>229_residues MSYISEPSFEGSFDRYIFKKNDNKFIKELRNDISNCLNIKKLEELHLQVESEKINELRIKAFKSINKISEWKKKILDLIS PEIYEILGLDLAIQKNLNLSIQMPGEVNSILEKHVDYRTGDSPFQRVVWIPVTNSYDSNSIFMLDKESNYKPININYGEF LVFDPNTEHGNIVNKTDKTRVSINVRVKNWFSPDLSNFAPDRQFGVYYEDLCFSESTIRAFEILDKENE
Sequences:
>Translated_229_residues MSYISEPSFEGSFDRYIFKKNDNKFIKELRNDISNCLNIKKLEELHLQVESEKINELRIKAFKSINKISEWKKKILDLIS PEIYEILGLDLAIQKNLNLSIQMPGEVNSILEKHVDYRTGDSPFQRVVWIPVTNSYDSNSIFMLDKESNYKPININYGEF LVFDPNTEHGNIVNKTDKTRVSINVRVKNWFSPDLSNFAPDRQFGVYYEDLCFSESTIRAFEILDKENE >Mature_228_residues SYISEPSFEGSFDRYIFKKNDNKFIKELRNDISNCLNIKKLEELHLQVESEKINELRIKAFKSINKISEWKKKILDLISP EIYEILGLDLAIQKNLNLSIQMPGEVNSILEKHVDYRTGDSPFQRVVWIPVTNSYDSNSIFMLDKESNYKPININYGEFL VFDPNTEHGNIVNKTDKTRVSINVRVKNWFSPDLSNFAPDRQFGVYYEDLCFSESTIRAFEILDKENE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26852; Mature: 26721
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYISEPSFEGSFDRYIFKKNDNKFIKELRNDISNCLNIKKLEELHLQVESEKINELRIK CCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCHHHHHHHHEEECCHHHHHHHHH AFKSINKISEWKKKILDLISPEIYEILGLDLAIQKNLNLSIQMPGEVNSILEKHVDYRTG HHHHHHHHHHHHHHHHHHHCHHHHHHHCCCEEEECCCCEEEECCCHHHHHHHHHCCCCCC DSPFQRVVWIPVTNSYDSNSIFMLDKESNYKPININYGEFLVFDPNTEHGNIVNKTDKTR CCCHHEEEEEEECCCCCCCEEEEEECCCCCCEEEECCCCEEEECCCCCCCCEECCCCCEE VSINVRVKNWFSPDLSNFAPDRQFGVYYEDLCFSESTIRAFEILDKENE EEEEEEEECCCCCCHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHCCCCC >Mature Secondary Structure SYISEPSFEGSFDRYIFKKNDNKFIKELRNDISNCLNIKKLEELHLQVESEKINELRIK CCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCHHHHHHHHEEECCHHHHHHHHH AFKSINKISEWKKKILDLISPEIYEILGLDLAIQKNLNLSIQMPGEVNSILEKHVDYRTG HHHHHHHHHHHHHHHHHHHCHHHHHHHCCCEEEECCCCEEEECCCHHHHHHHHHCCCCCC DSPFQRVVWIPVTNSYDSNSIFMLDKESNYKPININYGEFLVFDPNTEHGNIVNKTDKTR CCCHHEEEEEEECCCCCCCEEEEEECCCCCCEEEECCCCEEEECCCCCCCCEECCCCCEE VSINVRVKNWFSPDLSNFAPDRQFGVYYEDLCFSESTIRAFEILDKENE EEEEEEEECCCCCCHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA