Click here to switch to the map view.

The map label for this gene is ydiU [C]

Identifier: 123968829

GI number: 123968829

Start: 1082001

End: 1083704

Strand: Direct

Name: ydiU [C]

Synonym: A9601_12961

Alternate gene names: 123968829

Gene position: 1082001-1083704 (Clockwise)

Preceding gene: 123968828

Following gene: 123968833

Centisome position: 64.79

GC content: 36.09

Gene sequence:

>1704_bases
ATGTCAACCAAATCTGATTCATTAAAAGGAAAGCTTACAGAAAATTTTTCCGAATTTTCTCAACTATCTGACTATTCTTT
TATGAATTCTCTTAAAGCAGATCCTCAATCAACAAAAGATGGAAATGATCATAAGCCGCGTTCAGTATATTCAGGTCATT
ACGTGCCAGTTGTTCCAACTGCTATTCCAGAACCAGAATATATTTCCCATAGCAACAAACTTTTTAAAGAACTAAGGCTA
AGCTCAAATCTTACTAAAGACCAGAATTTTTGTCGTTTTTTCTCAGGTGATATTTCTGTTGCTAATTATCCAATGAGTCC
TGTTGGTTGGGCAACAGGTTATGCATTATCTATTTACGGGACTGAATATACCCAACAATGTCCCTTTGGCACTGGCAATG
GTTATGGCGATGGCAGAGCAATTTCTGTTTTTGAAGGTTTATTCAATGGGAAAAGAATGGAAATGCAACTTAAAGGAGGA
GGTCCAACTCCCTACTGTCGTGGAGCAGATGGTAGAGCTGTCTTAAGGTCTAGCGTTCGAGAATTTCTCGCACAGGAATT
AATGGATGCCTTGGGAATCCCTACCTCAAGATCTTTAACACTTTTTGTCTCACGTTCAGAAATAGTTAGAAGACCGTGGT
ATTCCAAAGGGTCCAGATATTTTGAACCTGATATCATGATTGATAATCAAGCAGCAATTACTACGAGAGTCGCTCCATCT
TTTTTACGTGTAGGCCAGATTGAACTTTTTGCAAGAAGAGTTCGCGATAATGCGCATGATGAGGCCCTCAATGAACTAAA
GATGATAGTTCAACATCTAATTGATAGAAATTATAAAGATGAAATTGAATATGAGATTTCGATTCAAAGTAAAGTAATAA
AACTGGCTTCTTTATACAGATCAAGACTTATATCACTCATAGCCAACTGGATGAGAGTTGGTTATTGCCAGGGTAATTTC
AATAGTGATAATTGTGCTGCTGGAGGTTATACCTTGGATTATGGCCCCTTTGGATTCTGTGAATTATTTGATCCAAGATT
TCAACCATGGACAGGTGGAGGTGAACATTTCTCATTTTTTAACCAGCCTTCTGCAGCGGCAATCAACTTTAAAACATTTT
GTTCCTCTCTTAGTCCGTTACTTTCAAAAAGCAAACAAGATCAAGAAAAGTTAGATCAAATCGAAAAAGACTTTTCTGAA
TTAATGAATAAGGAATTAATGAAAATGTGGGCAAACAAGCTTGGTTTAGAACATTACAACGAAACTCTAATAAATGAATT
TTTTAATCTCATGGTCATTTCAAAAGCAGACTATACAATTTTGTTCCGTAAACTCTCTGAAATCCCTGATAACTTAGATT
CTTTAAAAGACTGTTTCTATTTACCAATTAATGACGAGCTCAATAATAGGTGGGAAGTATGGCTTGAAAACTGGCAATCA
GTCTTGAAGAAAGAGGAAAATATTAAAGCAAAATCGGCATCAATGAAATCCCTTAATCCAGTCTATACTTGGCGTGAATG
GATGGTCGTTCCTGCATATGAAGAAGCTGAAAAGGGAAATTACAAGAAAATAAAAGAGTTACAGGATATCTTTAGCAATC
CATATGTAGAACAACCCGCAGAAATAGATCAAAAATATAATCGACTAAAGCCAAGCCAGTATTTTAACTATGGAGGAGTA
TCTCATTACAGTTGTTCTTCGTAA

Upstream 100 bases:

>100_bases
CGTATCGGCAAAAACCATCCCTAATAGAATCTATATAAAATAAATTTAGGTGTTTAATTTAAAGGAATTAGAGCGCCTAA
AAGAATAGATAACAAATTTG

Downstream 100 bases:

>100_bases
AAGGTAAATCCTAAAAATGCAGATTGAATAACTTAGAGAAAATTTTATTCATTTATGGCCGTAGGCATTCCAACTACTGA
TACAACTCCCACATGAAGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 567; Mature: 566

Protein sequence:

>567_residues
MSTKSDSLKGKLTENFSEFSQLSDYSFMNSLKADPQSTKDGNDHKPRSVYSGHYVPVVPTAIPEPEYISHSNKLFKELRL
SSNLTKDQNFCRFFSGDISVANYPMSPVGWATGYALSIYGTEYTQQCPFGTGNGYGDGRAISVFEGLFNGKRMEMQLKGG
GPTPYCRGADGRAVLRSSVREFLAQELMDALGIPTSRSLTLFVSRSEIVRRPWYSKGSRYFEPDIMIDNQAAITTRVAPS
FLRVGQIELFARRVRDNAHDEALNELKMIVQHLIDRNYKDEIEYEISIQSKVIKLASLYRSRLISLIANWMRVGYCQGNF
NSDNCAAGGYTLDYGPFGFCELFDPRFQPWTGGGEHFSFFNQPSAAAINFKTFCSSLSPLLSKSKQDQEKLDQIEKDFSE
LMNKELMKMWANKLGLEHYNETLINEFFNLMVISKADYTILFRKLSEIPDNLDSLKDCFYLPINDELNNRWEVWLENWQS
VLKKEENIKAKSASMKSLNPVYTWREWMVVPAYEEAEKGNYKKIKELQDIFSNPYVEQPAEIDQKYNRLKPSQYFNYGGV
SHYSCSS

Sequences:

>Translated_567_residues
MSTKSDSLKGKLTENFSEFSQLSDYSFMNSLKADPQSTKDGNDHKPRSVYSGHYVPVVPTAIPEPEYISHSNKLFKELRL
SSNLTKDQNFCRFFSGDISVANYPMSPVGWATGYALSIYGTEYTQQCPFGTGNGYGDGRAISVFEGLFNGKRMEMQLKGG
GPTPYCRGADGRAVLRSSVREFLAQELMDALGIPTSRSLTLFVSRSEIVRRPWYSKGSRYFEPDIMIDNQAAITTRVAPS
FLRVGQIELFARRVRDNAHDEALNELKMIVQHLIDRNYKDEIEYEISIQSKVIKLASLYRSRLISLIANWMRVGYCQGNF
NSDNCAAGGYTLDYGPFGFCELFDPRFQPWTGGGEHFSFFNQPSAAAINFKTFCSSLSPLLSKSKQDQEKLDQIEKDFSE
LMNKELMKMWANKLGLEHYNETLINEFFNLMVISKADYTILFRKLSEIPDNLDSLKDCFYLPINDELNNRWEVWLENWQS
VLKKEENIKAKSASMKSLNPVYTWREWMVVPAYEEAEKGNYKKIKELQDIFSNPYVEQPAEIDQKYNRLKPSQYFNYGGV
SHYSCSS
>Mature_566_residues
STKSDSLKGKLTENFSEFSQLSDYSFMNSLKADPQSTKDGNDHKPRSVYSGHYVPVVPTAIPEPEYISHSNKLFKELRLS
SNLTKDQNFCRFFSGDISVANYPMSPVGWATGYALSIYGTEYTQQCPFGTGNGYGDGRAISVFEGLFNGKRMEMQLKGGG
PTPYCRGADGRAVLRSSVREFLAQELMDALGIPTSRSLTLFVSRSEIVRRPWYSKGSRYFEPDIMIDNQAAITTRVAPSF
LRVGQIELFARRVRDNAHDEALNELKMIVQHLIDRNYKDEIEYEISIQSKVIKLASLYRSRLISLIANWMRVGYCQGNFN
SDNCAAGGYTLDYGPFGFCELFDPRFQPWTGGGEHFSFFNQPSAAAINFKTFCSSLSPLLSKSKQDQEKLDQIEKDFSEL
MNKELMKMWANKLGLEHYNETLINEFFNLMVISKADYTILFRKLSEIPDNLDSLKDCFYLPINDELNNRWEVWLENWQSV
LKKEENIKAKSASMKSLNPVYTWREWMVVPAYEEAEKGNYKKIKELQDIFSNPYVEQPAEIDQKYNRLKPSQYFNYGGVS
HYSCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=430, Percent_Identity=29.3023255813954, Blast_Score=157, Evalue=3e-38,
Organism=Escherichia coli, GI1787999, Length=527, Percent_Identity=31.4990512333966, Blast_Score=206, Evalue=3e-54,
Organism=Saccharomyces cerevisiae, GI6325034, Length=425, Percent_Identity=29.1764705882353, Blast_Score=142, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 64942; Mature: 64811

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTKSDSLKGKLTENFSEFSQLSDYSFMNSLKADPQSTKDGNDHKPRSVYSGHYVPVVPT
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCC
AIPEPEYISHSNKLFKELRLSSNLTKDQNFCRFFSGDISVANYPMSPVGWATGYALSIYG
CCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEEC
TEYTQQCPFGTGNGYGDGRAISVFEGLFNGKRMEMQLKGGGPTPYCRGADGRAVLRSSVR
CCHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHH
EFLAQELMDALGIPTSRSLTLFVSRSEIVRRPWYSKGSRYFEPDIMIDNQAAITTRVAPS
HHHHHHHHHHHCCCCCCCEEEEEEHHHHHHCCCCCCCCCEECCCEEECCCCHHHHHHCHH
FLRVGQIELFARRVRDNAHDEALNELKMIVQHLIDRNYKDEIEYEISIQSKVIKLASLYR
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHH
SRLISLIANWMRVGYCQGNFNSDNCAAGGYTLDYGPFGFCELFDPRFQPWTGGGEHFSFF
HHHHHHHHHHHHHEEECCCCCCCCCCCCCEEECCCCCCHHHHCCCCCCCCCCCCCCCCCC
NQPSAAAINFKTFCSSLSPLLSKSKQDQEKLDQIEKDFSELMNKELMKMWANKLGLEHYN
CCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
ETLINEFFNLMVISKADYTILFRKLSEIPDNLDSLKDCFYLPINDELNNRWEVWLENWQS
HHHHHHHHHEEEECCCCHHHHHHHHHHCCCHHHHHHHEEEECCCCCCCCHHHHHHHHHHH
VLKKEENIKAKSASMKSLNPVYTWREWMVVPAYEEAEKGNYKKIKELQDIFSNPYVEQPA
HHHHHHCCHHHHHHHHCCCCCEEEEHEEEECCHHHHCCCCHHHHHHHHHHHCCCCCCCCH
EIDQKYNRLKPSQYFNYGGVSHYSCSS
HHHHHHHHCCCHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
STKSDSLKGKLTENFSEFSQLSDYSFMNSLKADPQSTKDGNDHKPRSVYSGHYVPVVPT
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCC
AIPEPEYISHSNKLFKELRLSSNLTKDQNFCRFFSGDISVANYPMSPVGWATGYALSIYG
CCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEEC
TEYTQQCPFGTGNGYGDGRAISVFEGLFNGKRMEMQLKGGGPTPYCRGADGRAVLRSSVR
CCHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHH
EFLAQELMDALGIPTSRSLTLFVSRSEIVRRPWYSKGSRYFEPDIMIDNQAAITTRVAPS
HHHHHHHHHHHCCCCCCCEEEEEEHHHHHHCCCCCCCCCEECCCEEECCCCHHHHHHCHH
FLRVGQIELFARRVRDNAHDEALNELKMIVQHLIDRNYKDEIEYEISIQSKVIKLASLYR
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHH
SRLISLIANWMRVGYCQGNFNSDNCAAGGYTLDYGPFGFCELFDPRFQPWTGGGEHFSFF
HHHHHHHHHHHHHEEECCCCCCCCCCCCCEEECCCCCCHHHHCCCCCCCCCCCCCCCCCC
NQPSAAAINFKTFCSSLSPLLSKSKQDQEKLDQIEKDFSELMNKELMKMWANKLGLEHYN
CCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
ETLINEFFNLMVISKADYTILFRKLSEIPDNLDSLKDCFYLPINDELNNRWEVWLENWQS
HHHHHHHHHEEEECCCCHHHHHHHHHHCCCHHHHHHHEEEECCCCCCCCHHHHHHHHHHH
VLKKEENIKAKSASMKSLNPVYTWREWMVVPAYEEAEKGNYKKIKELQDIFSNPYVEQPA
HHHHHHCCHHHHHHHHCCCCCEEEEHEEEECCHHHHCCCCHHHHHHHHHHHCCCCCCCCH
EIDQKYNRLKPSQYFNYGGVSHYSCSS
HHHHHHHHCCCHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA