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The map label for this gene is yocR [H]

Identifier: 123968828

GI number: 123968828

Start: 1080254

End: 1081597

Strand: Direct

Name: yocR [H]

Synonym: A9601_12951

Alternate gene names: 123968828

Gene position: 1080254-1081597 (Clockwise)

Preceding gene: 123968821

Following gene: 123968829

Centisome position: 64.69

GC content: 35.57

Gene sequence:

>1344_bases
TTGGACTCAAAAATTTCTCAGAGAGAACAATGGACTAGTAAGCTAGGATTCATTCTCGCAGCTGCTGGTAGTGCAGTAGG
TCTAGGCAACCTTTGGGGTTTTGCTTACAGAGCATCTCAGGGTGGAGGTGCGGCGTTTGTACTTTTATATATATTGATCG
TTTTAATTGTATGTCTTCCAGTATTTGTTGCTGAAATGGCTCTAGGGAGAAACGCAATGGCAAGTACATTGCTTGCTCCT
GTAAAGCTGGCAGGGAAGAATTGGTATCCATTAGGAATTCTTTTCTTTATAGCTCCTTTAGGAATAGCATCATATTATTC
AGTGATAATGGGATGGACTGCAGATACCTTGTTCCATTCTTTATTTTTTGGATTACCAAAGAATTTAACTGAAGCAGAAA
CCTTCTTTGGCTCGATTAGTAGTGGCAGCAGTGTTTTGTTGGGCCACCTATTAAGTCTTGTACTTACAGCAATAATAGTT
TCATCAGGTATAAAAAAAGGTATAGAAAAGGTTACTAGATATTTCATGCCAATCCTTTTCATAATTATTGTGATTCTTGC
TATTTGGGCTACTTCACTTTCAGGTGCATGGGAAGGATATAAAACATTTCTACTTAAGTTTGACTTCAATGAATTGAGAA
ATCCTCAAACAATAAGAAACGCTTTTACACAAGCATTTTTTTCATTAAGTTTAGGGATTGGAATTATGGTTACCTACGCA
TCCTATTTAAATAAAAAAAGTAATCTTCCAAAATTAAGTGTAGGAGTTGCATCATTAGATACTTTGGTTGGACTAATGGC
TGGATTTATAACTTTCCCAATAGTTTTAACATTCGGTTTAAGTGACGCTATTTCTGAATCCACTGTTGGTGCTTTATTTA
TCTCAATTCCAACAGGTTTAGGTTCATATGGTGCGGCAGGAAGAATTGTAGCTGTTGCATTTTTCGCATTAGCTTATATT
GCAGCAATAACTTCCTCTGTTTCATTATTGGAAGTTCCAGTTTCCTCTTTAATGGATAAATTTGGTTTTAAAAGAGAAAA
ATCTGTTTGGCTGATAACTCTTTTCTTATTCTTAGCAGGCATTCCTTCTGCATTAAACTTAAACATTCTTGGAACTATTG
ATTCGATTTTTGGAGGTGTATTACTTATCTTTGGTGGATTCTTGGTTACTTTCTTTATGGGATGGGTAGTACCTGGAAAG
TTTAATGAAGAACTTAGTGATTCAAAAGTTGGAATCAAAACGACACGTTATTTGAAATTCATGACAAGATGGGTTGCGCC
ACCAATTATTGGTTTTGGACTATTTATTAGTGTGTTTGATTTGCTTAAAGGCTGGGTAAGTTAA

Upstream 100 bases:

>100_bases
ATCAAAAAAATTAATCTAAAAAAATTAGTTTTTATTAAGCAAAGTGTTAACTAATTTTCATTTATGAGTTATAAATCAAC
TATAAAAAACGATTTTAATT

Downstream 100 bases:

>100_bases
AAATAAATAAAATTATAATTTATAAAATTGAATAAATTTACTGCGATATAGTGCGGAAATAGGGGGAGGGGTGCAAGTCT
AAAAAAGATAAAATAGTTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 447

Protein sequence:

>447_residues
MDSKISQREQWTSKLGFILAAAGSAVGLGNLWGFAYRASQGGGAAFVLLYILIVLIVCLPVFVAEMALGRNAMASTLLAP
VKLAGKNWYPLGILFFIAPLGIASYYSVIMGWTADTLFHSLFFGLPKNLTEAETFFGSISSGSSVLLGHLLSLVLTAIIV
SSGIKKGIEKVTRYFMPILFIIIVILAIWATSLSGAWEGYKTFLLKFDFNELRNPQTIRNAFTQAFFSLSLGIGIMVTYA
SYLNKKSNLPKLSVGVASLDTLVGLMAGFITFPIVLTFGLSDAISESTVGALFISIPTGLGSYGAAGRIVAVAFFALAYI
AAITSSVSLLEVPVSSLMDKFGFKREKSVWLITLFLFLAGIPSALNLNILGTIDSIFGGVLLIFGGFLVTFFMGWVVPGK
FNEELSDSKVGIKTTRYLKFMTRWVAPPIIGFGLFISVFDLLKGWVS

Sequences:

>Translated_447_residues
MDSKISQREQWTSKLGFILAAAGSAVGLGNLWGFAYRASQGGGAAFVLLYILIVLIVCLPVFVAEMALGRNAMASTLLAP
VKLAGKNWYPLGILFFIAPLGIASYYSVIMGWTADTLFHSLFFGLPKNLTEAETFFGSISSGSSVLLGHLLSLVLTAIIV
SSGIKKGIEKVTRYFMPILFIIIVILAIWATSLSGAWEGYKTFLLKFDFNELRNPQTIRNAFTQAFFSLSLGIGIMVTYA
SYLNKKSNLPKLSVGVASLDTLVGLMAGFITFPIVLTFGLSDAISESTVGALFISIPTGLGSYGAAGRIVAVAFFALAYI
AAITSSVSLLEVPVSSLMDKFGFKREKSVWLITLFLFLAGIPSALNLNILGTIDSIFGGVLLIFGGFLVTFFMGWVVPGK
FNEELSDSKVGIKTTRYLKFMTRWVAPPIIGFGLFISVFDLLKGWVS
>Mature_447_residues
MDSKISQREQWTSKLGFILAAAGSAVGLGNLWGFAYRASQGGGAAFVLLYILIVLIVCLPVFVAEMALGRNAMASTLLAP
VKLAGKNWYPLGILFFIAPLGIASYYSVIMGWTADTLFHSLFFGLPKNLTEAETFFGSISSGSSVLLGHLLSLVLTAIIV
SSGIKKGIEKVTRYFMPILFIIIVILAIWATSLSGAWEGYKTFLLKFDFNELRNPQTIRNAFTQAFFSLSLGIGIMVTYA
SYLNKKSNLPKLSVGVASLDTLVGLMAGFITFPIVLTFGLSDAISESTVGALFISIPTGLGSYGAAGRIVAVAFFALAYI
AAITSSVSLLEVPVSSLMDKFGFKREKSVWLITLFLFLAGIPSALNLNILGTIDSIFGGVLLIFGGFLVTFFMGWVVPGK
FNEELSDSKVGIKTTRYLKFMTRWVAPPIIGFGLFISVFDLLKGWVS

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI289191351, Length=504, Percent_Identity=23.8095238095238, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI4557046, Length=504, Percent_Identity=23.8095238095238, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI289191377, Length=504, Percent_Identity=23.8095238095238, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI171184408, Length=396, Percent_Identity=27.5252525252525, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI171184406, Length=396, Percent_Identity=27.5252525252525, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI171184404, Length=396, Percent_Identity=27.5252525252525, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI4507041, Length=496, Percent_Identity=23.3870967741935, Blast_Score=104, Evalue=2e-22,
Organism=Homo sapiens, GI4507043, Length=409, Percent_Identity=25.6723716381418, Blast_Score=102, Evalue=1e-21,
Organism=Homo sapiens, GI58219014, Length=307, Percent_Identity=28.6644951140065, Blast_Score=101, Evalue=2e-21,
Organism=Homo sapiens, GI21361581, Length=414, Percent_Identity=24.8792270531401, Blast_Score=100, Evalue=5e-21,
Organism=Homo sapiens, GI7657587, Length=497, Percent_Identity=23.943661971831, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI188528618, Length=382, Percent_Identity=24.869109947644, Blast_Score=98, Evalue=2e-20,
Organism=Homo sapiens, GI134304856, Length=414, Percent_Identity=26.5700483091787, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI11181770, Length=300, Percent_Identity=27.6666666666667, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI197276623, Length=509, Percent_Identity=24.75442043222, Blast_Score=95, Evalue=2e-19,
Organism=Homo sapiens, GI54607094, Length=509, Percent_Identity=24.75442043222, Blast_Score=95, Evalue=2e-19,
Organism=Homo sapiens, GI33354281, Length=306, Percent_Identity=25.8169934640523, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI194018524, Length=303, Percent_Identity=27.3927392739274, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI51468073, Length=304, Percent_Identity=25.6578947368421, Blast_Score=89, Evalue=7e-18,
Organism=Homo sapiens, GI5032097, Length=500, Percent_Identity=23.2, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI12408638, Length=277, Percent_Identity=27.0758122743682, Blast_Score=85, Evalue=2e-16,
Organism=Homo sapiens, GI218563756, Length=500, Percent_Identity=23, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI92859670, Length=205, Percent_Identity=33.6585365853659, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI21361693, Length=113, Percent_Identity=33.6283185840708, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI289191353, Length=438, Percent_Identity=21.689497716895, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI197276625, Length=134, Percent_Identity=34.3283582089552, Blast_Score=70, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17555248, Length=422, Percent_Identity=23.9336492890995, Blast_Score=108, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI25146584, Length=420, Percent_Identity=25, Blast_Score=101, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI17554804, Length=363, Percent_Identity=26.4462809917355, Blast_Score=86, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17569475, Length=411, Percent_Identity=25.5474452554745, Blast_Score=76, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI212642127, Length=308, Percent_Identity=25.974025974026, Blast_Score=66, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI133952791, Length=123, Percent_Identity=31.7073170731707, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24652942, Length=386, Percent_Identity=25.9067357512953, Blast_Score=119, Evalue=3e-27,
Organism=Drosophila melanogaster, GI45551088, Length=386, Percent_Identity=25.9067357512953, Blast_Score=119, Evalue=3e-27,
Organism=Drosophila melanogaster, GI24661428, Length=492, Percent_Identity=25.4065040650407, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI17136952, Length=395, Percent_Identity=26.8354430379747, Blast_Score=115, Evalue=5e-26,
Organism=Drosophila melanogaster, GI281363702, Length=486, Percent_Identity=25.9259259259259, Blast_Score=115, Evalue=7e-26,
Organism=Drosophila melanogaster, GI281364394, Length=456, Percent_Identity=25.6578947368421, Blast_Score=112, Evalue=5e-25,
Organism=Drosophila melanogaster, GI28574704, Length=456, Percent_Identity=25.6578947368421, Blast_Score=112, Evalue=5e-25,
Organism=Drosophila melanogaster, GI17136950, Length=456, Percent_Identity=25.6578947368421, Blast_Score=112, Evalue=5e-25,
Organism=Drosophila melanogaster, GI28574702, Length=456, Percent_Identity=25.6578947368421, Blast_Score=112, Evalue=5e-25,
Organism=Drosophila melanogaster, GI24582567, Length=418, Percent_Identity=27.0334928229665, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24762620, Length=427, Percent_Identity=26.9320843091335, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI19921936, Length=396, Percent_Identity=24.2424242424242, Blast_Score=109, Evalue=5e-24,
Organism=Drosophila melanogaster, GI281365034, Length=412, Percent_Identity=24.2718446601942, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI45550877, Length=509, Percent_Identity=24.1650294695481, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI281363700, Length=338, Percent_Identity=28.4023668639053, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI45551183, Length=335, Percent_Identity=26.5671641791045, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24639853, Length=427, Percent_Identity=24.3559718969555, Blast_Score=91, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24655079, Length=301, Percent_Identity=26.2458471760797, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24639514, Length=506, Percent_Identity=23.9130434782609, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI221329674, Length=506, Percent_Identity=23.9130434782609, Blast_Score=84, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24639516, Length=301, Percent_Identity=26.9102990033223, Blast_Score=83, Evalue=4e-16,
Organism=Drosophila melanogaster, GI281364136, Length=430, Percent_Identity=23.953488372093, Blast_Score=83, Evalue=4e-16,
Organism=Drosophila melanogaster, GI19921352, Length=208, Percent_Identity=26.4423076923077, Blast_Score=73, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24584353, Length=208, Percent_Identity=26.4423076923077, Blast_Score=73, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24654186, Length=307, Percent_Identity=25.4071661237785, Blast_Score=72, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24582569, Length=372, Percent_Identity=24.7311827956989, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 48209; Mature: 48209

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]