| Definition | Prochlorococcus marinus str. AS9601, complete genome. |
|---|---|
| Accession | NC_008816 |
| Length | 1,669,886 |
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The map label for this gene is dnaG [H]
Identifier: 123968454
GI number: 123968454
Start: 792271
End: 794304
Strand: Direct
Name: dnaG [H]
Synonym: A9601_09211
Alternate gene names: 123968454
Gene position: 792271-794304 (Clockwise)
Preceding gene: 123968448
Following gene: 123968460
Centisome position: 47.44
GC content: 28.27
Gene sequence:
>2034_bases ATGGTTCATTCTATACACCCAAGAACTATTCAAGAGGTTAAGGAAAAGGCAGATATTGTTGATGTTATATCTGAACATAT TGTTCTTAAGAAGAAAGGCAAGGAATTTGTTGGTATTTGCCCTTTTCATGATGATACTAAGCCATCTATGACAGTATCAC CTAGTAAACAATTCTATTATTGTTTTTCTTGTGGTGCTGGTGGTAACTCTATTAAATTTTTAATGGAATTTACTCGTGCA AATTTTTCAGATGTTGTACTCTCTCTAGCTAAAAAAAATAATATTAATGTTGAAAATCTCGAGGGTCCCCAGGTAGAAGC TTATAAAAAACAATTAACTAGAAAGGAAGAGCTTTATAAAATATTAAGAGTCACTAAAAATTGGTTTAAGTCTCAATTAA ATAATTCTCTTGGTGTTGAAGCTATGAAATATTTAACATCAAAGAGAAACTTAAGTAATAAGATTATTGATAACTTTGAA TTAGGTTTTGCCCCAAATTCATGGAATGATTTATTTAACTATCTATCCAAGGCAGAAAAATTTCCTATCAATTTAATATT AGCTTCAGGCCTTGCAATTTCTAAAGATAATTCTGACAAAATTTATGATCGTTTTAGAAATAGATTAATTGTTCCAATAC ATGATATGCAGGGAAGAGTAGTTGCTTTTGGAGGAAGATCTCTTGATGGTCAGGAACCTAAATACCTTAATTCTCCTGAA TCAGAGATATTTGAAAAGGGCAAAATGTTGTTTGCATTCGAAAAAGCTTCTAGCAATATTAGGAAAAGAGATAAAGCTAT TATTGTTGAAGGCTACTTTGATGTTATTTCTCTTCATTCAAAAGGTATTACTAATTCTGTAGCTTCTCTCGGCACCGCAT TAAATAAGTATCAAATTTCTCAACTATGTAGATGTACAGATAATAAAAATATAATTTTGAATTTTGATTCTGATAATGCA GGTATTTTAGCTACAAAAAGAGTAATTAAAGAAGTCGAGAGTTTATCCATTCATGATCAAATTAATCTTAAGATACTTCA ACTAAGTGATTTTAAAGATCCTGATGAATATTTAAATAGTCATACTCCTGAAGATTATTTTAATTTAATTGATAATTCAT CCTTTTGGATTGATTGGGAGATTGATCAGATTTTTAAAGATAAAGATTTAACTAAGTCTGAAATTTTCCAGAGTGTTATT TCGTCATTGGTAAAATTGTTGAGTAAATTACCTCAATCATCAACCAGAACTCATTATCTACAAAAAGTTTCCGAAAAATT AAGTAAGGGACAAGCTAGGTTAGCAATACAGTTTGAACAAGATTTAAGAAATCAAGTAAAGGGATTTCGTTGGCATGGTA GATCAAAAAAATTTGAACAACCAAATGAAATTTCCCGACGTGAGAAAAATGAATCGGAAATAATTTTTTATTATTTACAT TGTCCAGATCTTAGGCTATTTATTCGTGATGAATTTCTCAAAAGAGAAATTAATGGTTTTAATACTAGTTATATTCAAAG TTTATGGGAAGCTATTTCAAAAATTGAACAAAATAATTTAGGTTTAAACTACTTAAATGATTTAAAACAATCAAATAGTC AAAATCTTCAAAAAGATTTTTCTTCTATTAACCTAATTTCACTTCTGCCTGATTACTTAGCTCTTAATAATTCTGAATCA TCAAATAAAATTAATATTTTTATTAATCCAAATGAGTTGTTTTTAACATTGCTTAGTAATCCTAAAGACAATTTACTAGG AACATTATCACTTCTTGAGAAATATAATTCTCTTAAAAGATGTAGACACCTAATCGAATCTTGGGGATCTCAAAGATTAA AAACTTTAGAAAATTGTATATCTATTTTAATTGATAATCCTTCTTCAGGTTCTTCAAATACAAATAAAGAGATAGATGAT CTTTTTAAGGATTTAAACTCAGATGCGATTAAATTTCAGGAATTATATTACTTGGAAAGGCAACATATTAATTTTTTAGA TAAACAACGTTGTGGCAATTTCATCGCTAGTTAA
Upstream 100 bases:
>100_bases TCATTTAAAAAAAATAATTTTATTGTGAAATTAAGTAGATTCTTACTTGATTTTGACCTATAACAAATAAATCACTATTT ATTTTTCGATAATAATCTCA
Downstream 100 bases:
>100_bases TATAAAAATTTTTAATTTATAGACAGTATTTTTCTATCAAGTTTTTAACTTTTTTGGGTTTATCTTCAAGAACATAAGCT TCTACTTCTTTCGCATAAGT
Product: DNA primase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 677; Mature: 677
Protein sequence:
>677_residues MVHSIHPRTIQEVKEKADIVDVISEHIVLKKKGKEFVGICPFHDDTKPSMTVSPSKQFYYCFSCGAGGNSIKFLMEFTRA NFSDVVLSLAKKNNINVENLEGPQVEAYKKQLTRKEELYKILRVTKNWFKSQLNNSLGVEAMKYLTSKRNLSNKIIDNFE LGFAPNSWNDLFNYLSKAEKFPINLILASGLAISKDNSDKIYDRFRNRLIVPIHDMQGRVVAFGGRSLDGQEPKYLNSPE SEIFEKGKMLFAFEKASSNIRKRDKAIIVEGYFDVISLHSKGITNSVASLGTALNKYQISQLCRCTDNKNIILNFDSDNA GILATKRVIKEVESLSIHDQINLKILQLSDFKDPDEYLNSHTPEDYFNLIDNSSFWIDWEIDQIFKDKDLTKSEIFQSVI SSLVKLLSKLPQSSTRTHYLQKVSEKLSKGQARLAIQFEQDLRNQVKGFRWHGRSKKFEQPNEISRREKNESEIIFYYLH CPDLRLFIRDEFLKREINGFNTSYIQSLWEAISKIEQNNLGLNYLNDLKQSNSQNLQKDFSSINLISLLPDYLALNNSES SNKINIFINPNELFLTLLSNPKDNLLGTLSLLEKYNSLKRCRHLIESWGSQRLKTLENCISILIDNPSSGSSNTNKEIDD LFKDLNSDAIKFQELYYLERQHINFLDKQRCGNFIAS
Sequences:
>Translated_677_residues MVHSIHPRTIQEVKEKADIVDVISEHIVLKKKGKEFVGICPFHDDTKPSMTVSPSKQFYYCFSCGAGGNSIKFLMEFTRA NFSDVVLSLAKKNNINVENLEGPQVEAYKKQLTRKEELYKILRVTKNWFKSQLNNSLGVEAMKYLTSKRNLSNKIIDNFE LGFAPNSWNDLFNYLSKAEKFPINLILASGLAISKDNSDKIYDRFRNRLIVPIHDMQGRVVAFGGRSLDGQEPKYLNSPE SEIFEKGKMLFAFEKASSNIRKRDKAIIVEGYFDVISLHSKGITNSVASLGTALNKYQISQLCRCTDNKNIILNFDSDNA GILATKRVIKEVESLSIHDQINLKILQLSDFKDPDEYLNSHTPEDYFNLIDNSSFWIDWEIDQIFKDKDLTKSEIFQSVI SSLVKLLSKLPQSSTRTHYLQKVSEKLSKGQARLAIQFEQDLRNQVKGFRWHGRSKKFEQPNEISRREKNESEIIFYYLH CPDLRLFIRDEFLKREINGFNTSYIQSLWEAISKIEQNNLGLNYLNDLKQSNSQNLQKDFSSINLISLLPDYLALNNSES SNKINIFINPNELFLTLLSNPKDNLLGTLSLLEKYNSLKRCRHLIESWGSQRLKTLENCISILIDNPSSGSSNTNKEIDD LFKDLNSDAIKFQELYYLERQHINFLDKQRCGNFIAS >Mature_677_residues MVHSIHPRTIQEVKEKADIVDVISEHIVLKKKGKEFVGICPFHDDTKPSMTVSPSKQFYYCFSCGAGGNSIKFLMEFTRA NFSDVVLSLAKKNNINVENLEGPQVEAYKKQLTRKEELYKILRVTKNWFKSQLNNSLGVEAMKYLTSKRNLSNKIIDNFE LGFAPNSWNDLFNYLSKAEKFPINLILASGLAISKDNSDKIYDRFRNRLIVPIHDMQGRVVAFGGRSLDGQEPKYLNSPE SEIFEKGKMLFAFEKASSNIRKRDKAIIVEGYFDVISLHSKGITNSVASLGTALNKYQISQLCRCTDNKNIILNFDSDNA GILATKRVIKEVESLSIHDQINLKILQLSDFKDPDEYLNSHTPEDYFNLIDNSSFWIDWEIDQIFKDKDLTKSEIFQSVI SSLVKLLSKLPQSSTRTHYLQKVSEKLSKGQARLAIQFEQDLRNQVKGFRWHGRSKKFEQPNEISRREKNESEIIFYYLH CPDLRLFIRDEFLKREINGFNTSYIQSLWEAISKIEQNNLGLNYLNDLKQSNSQNLQKDFSSINLISLLPDYLALNNSES SNKINIFINPNELFLTLLSNPKDNLLGTLSLLEKYNSLKRCRHLIESWGSQRLKTLENCISILIDNPSSGSSNTNKEIDD LFKDLNSDAIKFQELYYLERQHINFLDKQRCGNFIAS
Specific function: DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis [H]
COG id: COG0358
COG function: function code L; DNA primase (bacterial type)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
Organism=Escherichia coli, GI1789447, Length=428, Percent_Identity=34.5794392523364, Blast_Score=258, Evalue=1e-69,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013264 - InterPro: IPR019475 - InterPro: IPR006295 - InterPro: IPR006171 - InterPro: IPR002694 [H]
Pfam domain/function: PF10410 DnaB_bind; PF01751 Toprim; PF08275 Toprim_N; PF01807 zf-CHC2 [H]
EC number: 2.7.7.-
Molecular weight: Translated: 78012; Mature: 78012
Theoretical pI: Translated: 8.67; Mature: 8.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVHSIHPRTIQEVKEKADIVDVISEHIVLKKKGKEFVGICPFHDDTKPSMTVSPSKQFYY CCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEECCCCCCCCCCEEECCCCCEEE CFSCGAGGNSIKFLMEFTRANFSDVVLSLAKKNNINVENLEGPQVEAYKKQLTRKEELYK EEEECCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH ILRVTKNWFKSQLNNSLGVEAMKYLTSKRNLSNKIIDNFELGFAPNSWNDLFNYLSKAEK HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC FPINLILASGLAISKDNSDKIYDRFRNRLIVPIHDMQGRVVAFGGRSLDGQEPKYLNSPE CCEEEEEECCEEEECCCCHHHHHHHHCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCH SEIFEKGKMLFAFEKASSNIRKRDKAIIVEGYFDVISLHSKGITNSVASLGTALNKYQIS HHHHHCCCEEEEEEHHHHHHHHCCCEEEEECHHHHHHHHCCCCHHHHHHHHHHHHHHHHH QLCRCTDNKNIILNFDSDNAGILATKRVIKEVESLSIHDQINLKILQLSDFKDPDEYLNS HHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHCC HTPEDYFNLIDNSSFWIDWEIDQIFKDKDLTKSEIFQSVISSLVKLLSKLPQSSTRTHYL CCCHHHHHHHCCCCEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH QKVSEKLSKGQARLAIQFEQDLRNQVKGFRWHGRSKKFEQPNEISRREKNESEIIFYYLH HHHHHHHCCCCEEEEEEEHHHHHHHHCCCEECCCCCCCCCCHHHHHHCCCCCCEEEEEEE CPDLRLFIRDEFLKREINGFNTSYIQSLWEAISKIEQNNLGLNYLNDLKQSNSQNLQKDF CCCEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHH SSINLISLLPDYLALNNSESSNKINIFINPNELFLTLLSNPKDNLLGTLSLLEKYNSLKR HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH CRHLIESWGSQRLKTLENCISILIDNPSSGSSNTNKEIDDLFKDLNSDAIKFQELYYLER HHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH QHINFLDKQRCGNFIAS HHCCHHHHHHHCHHCCC >Mature Secondary Structure MVHSIHPRTIQEVKEKADIVDVISEHIVLKKKGKEFVGICPFHDDTKPSMTVSPSKQFYY CCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEECCCCCCCCCCEEECCCCCEEE CFSCGAGGNSIKFLMEFTRANFSDVVLSLAKKNNINVENLEGPQVEAYKKQLTRKEELYK EEEECCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH ILRVTKNWFKSQLNNSLGVEAMKYLTSKRNLSNKIIDNFELGFAPNSWNDLFNYLSKAEK HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC FPINLILASGLAISKDNSDKIYDRFRNRLIVPIHDMQGRVVAFGGRSLDGQEPKYLNSPE CCEEEEEECCEEEECCCCHHHHHHHHCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCH SEIFEKGKMLFAFEKASSNIRKRDKAIIVEGYFDVISLHSKGITNSVASLGTALNKYQIS HHHHHCCCEEEEEEHHHHHHHHCCCEEEEECHHHHHHHHCCCCHHHHHHHHHHHHHHHHH QLCRCTDNKNIILNFDSDNAGILATKRVIKEVESLSIHDQINLKILQLSDFKDPDEYLNS HHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHCC HTPEDYFNLIDNSSFWIDWEIDQIFKDKDLTKSEIFQSVISSLVKLLSKLPQSSTRTHYL CCCHHHHHHHCCCCEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH QKVSEKLSKGQARLAIQFEQDLRNQVKGFRWHGRSKKFEQPNEISRREKNESEIIFYYLH HHHHHHHCCCCEEEEEEEHHHHHHHHCCCEECCCCCCCCCCHHHHHHCCCCCCEEEEEEE CPDLRLFIRDEFLKREINGFNTSYIQSLWEAISKIEQNNLGLNYLNDLKQSNSQNLQKDF CCCEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHH SSINLISLLPDYLALNNSESSNKINIFINPNELFLTLLSNPKDNLLGTLSLLEKYNSLKR HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH CRHLIESWGSQRLKTLENCISILIDNPSSGSSNTNKEIDDLFKDLNSDAIKFQELYYLER HHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH QHINFLDKQRCGNFIAS HHCCHHHHHHHCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferring phosphorus-containing groups; Nucleotidyltransferases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA