Click here to switch to the map view.

The map label for this gene is urtC [C]

Identifier: 123968419

GI number: 123968419

Start: 761266

End: 762396

Strand: Reverse

Name: urtC [C]

Synonym: A9601_08861

Alternate gene names: 123968419

Gene position: 762396-761266 (Counterclockwise)

Preceding gene: 123968420

Following gene: 123968418

Centisome position: 45.66

GC content: 34.31

Gene sequence:

>1131_bases
ATGTCCTTAAGTAAAATTAAATTTGATAAAAAAATAGTATTATCATTTTGGATAATATTAATAGCCTTAATTATTGCAGC
ACCAACTATACTCCCTGTATTTAGACTAAACCTTTTAGGTAGATACTTATCATTATCCATAGTTGCACTTGGTGTTGATC
TTATCTGGGGATATACAGGTTTACTAAGTCTTGGACAAGGTATATTTTTTGCACTAGGTGGATATTGTGCAGCAATGTAT
TTGCAAATAACCAGCTCCTCTGAATTTCCAAATAATATTCCTGAATTTTTTGCTTTATATGGTGTTGAAAAATTACCTTT
TTTCTGGGAACCGTTTAGATCGCCTGTTTTTACCTTCTTCGCTATCTGGATAATTCCAGCATTGGTTGCTGGTTTAATTG
GATTTCTTGTTTTCAGGAATAGAATCAAAGGGGTTTATTTTTCTATACTTACTCAAGCTTCTCTTCTTGTATTTTTTAAC
TTCTTTAATGGACAACAAAAACTTATAAATGGAACAAATGGATTAAAAACAGATGTAACACAACTATTTGGTCAAATGGT
AGGCTCTGAGTCTATGCAAAGAATATTCTTTTGGATAACCGCCATACTAGTAATAGCAGCATGGTTTTTTGCAAAGTGGG
TAGTTAAAGGAAGATTTGGGAATATACTTATAGGAATCCGAGATGATGAACCAAGAGTTAGGTTTACAGGATATAACCCA
GTTATATTCAAGACGATAATATTTTCTATTGCTGGAGGACTCGCTGGAATTTCGGGAGCTTTATATACCGTTCAGTCTGG
GATAGTATCCCCTCAATTTATGACAGTTCCCTTTTCTATAGAAATGGTTATATGGGTTGCTGTTGGAGGAAGAGGAACTT
TATTGGGAGCGATACTAGGAGCAGTTTTTATCAACTATGCAAAAAGTCTTGTAAGTGAAGCTTTACCTGCTAGCTGGATG
TTTATTCAAGGAGGGTTATTTATATTAGTTGTAACAGCTCTGCCAGAGGGAGTTTTAGGATGGATTCAAGGAGATGGTCC
TAGGAATCTTCTTCAAAAATTTGGTTTGAAAAGAAAGATTGAAACCTATCCAAGCTTAGAAGTTAACAATAAGGAGGGGA
ATAATGAATAA

Upstream 100 bases:

>100_bases
CAAGTATGGCAAGAGTAATGATATTTGCACTAATTGTTATATTCTTACAATTTAAACCTACAGGTTTATTTCCTCAAAAA
GGAAGGATGGTTGAAAACTA

Downstream 100 bases:

>100_bases
TAAAGATCTTCTAAATTTAATAGATATTACTGTTAGTTTCGAGGGTTTTTTAGCTCTTAACAAACTTAATTTAAATTTGA
AGAAAGGAGAATTAAGAGCT

Product: putative membrane protein of urea ABC transport system

Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]

Alternate protein names: Inner-Membrane Translocator; Branched-Chain Amino Acid ABC Transporter Permease Protein; ABC Transporter Permease Protein; Urea ABC Transporter Permease UrtC; Branched Chain Amino Acid ABC Transporter Permease; Amino Acid Or Sugar ABC Transport System Permease Protein; ABC Transporter ; Branched-Chain Amino Acid Transport System Permease Protein; Branched-Chain Amino Acid ABC Transporter Permease; ABC Transporter Permease; ABC Transporter; ABC-Type Urea Transport System Permease Protein II; Urea ABC Transporter Permease; Permease Of ABC Transporter; ABC Transporter Membrane Spanning Protein; Urea Or Short-Chain Amide ABC Transporter; Urea Or Short-Chain Amide ABC Transporter Permease Protein; Amide-Urea Transport System Permease Protein; Branched-Chain Amino Acid Transport Permease; Branched Chain Amino Acid ABC Transporter Permease Protein; Amide-Urea Transporter Permease Protein; Transmembrane Component Of ABC Transporter; High-Affinity Branched-Chain Amino Acid Transport System; Urea/Short Chain-Amide ABC Transporter Permease Protein; Urea ABC Transporter Permease Protein; ABC Transporter Related Protein; ABC Transporter Membrane Protein; Branched-Chain Amino Acid Transporter; Urea Transport System Permease Protein; ABC Transporter Inner-Membrane Translocator; ABC-Type Transport System Permease Protein; ABC Transporter-Like Protein; Integral Membrane Protein; Urea ABC Transporter Inner-Membrane Subunit UrtC; ABC Branched Amino Acid Transporter Permease Component; ABC-Type Branched-Chain Amino Acid Transport System; Branched-Chain Amino Acid Transport System Permease; Amino Acid/Amide ABC Transporter Membrane HAAT Family; Permease Protein Of ABC Transporter; Urea Transport System Permease Component Protein; Permease Component Of ABC Transporter; Urea/Short Chain-Amides ABC Transporter Permease; Permease Transporter Transmembrane Protein; Urea ABC Transport Permease Component UrtC

Number of amino acids: Translated: 376; Mature: 375

Protein sequence:

>376_residues
MSLSKIKFDKKIVLSFWIILIALIIAAPTILPVFRLNLLGRYLSLSIVALGVDLIWGYTGLLSLGQGIFFALGGYCAAMY
LQITSSSEFPNNIPEFFALYGVEKLPFFWEPFRSPVFTFFAIWIIPALVAGLIGFLVFRNRIKGVYFSILTQASLLVFFN
FFNGQQKLINGTNGLKTDVTQLFGQMVGSESMQRIFFWITAILVIAAWFFAKWVVKGRFGNILIGIRDDEPRVRFTGYNP
VIFKTIIFSIAGGLAGISGALYTVQSGIVSPQFMTVPFSIEMVIWVAVGGRGTLLGAILGAVFINYAKSLVSEALPASWM
FIQGGLFILVVTALPEGVLGWIQGDGPRNLLQKFGLKRKIETYPSLEVNNKEGNNE

Sequences:

>Translated_376_residues
MSLSKIKFDKKIVLSFWIILIALIIAAPTILPVFRLNLLGRYLSLSIVALGVDLIWGYTGLLSLGQGIFFALGGYCAAMY
LQITSSSEFPNNIPEFFALYGVEKLPFFWEPFRSPVFTFFAIWIIPALVAGLIGFLVFRNRIKGVYFSILTQASLLVFFN
FFNGQQKLINGTNGLKTDVTQLFGQMVGSESMQRIFFWITAILVIAAWFFAKWVVKGRFGNILIGIRDDEPRVRFTGYNP
VIFKTIIFSIAGGLAGISGALYTVQSGIVSPQFMTVPFSIEMVIWVAVGGRGTLLGAILGAVFINYAKSLVSEALPASWM
FIQGGLFILVVTALPEGVLGWIQGDGPRNLLQKFGLKRKIETYPSLEVNNKEGNNE
>Mature_375_residues
SLSKIKFDKKIVLSFWIILIALIIAAPTILPVFRLNLLGRYLSLSIVALGVDLIWGYTGLLSLGQGIFFALGGYCAAMYL
QITSSSEFPNNIPEFFALYGVEKLPFFWEPFRSPVFTFFAIWIIPALVAGLIGFLVFRNRIKGVYFSILTQASLLVFFNF
FNGQQKLINGTNGLKTDVTQLFGQMVGSESMQRIFFWITAILVIAAWFFAKWVVKGRFGNILIGIRDDEPRVRFTGYNPV
IFKTIIFSIAGGLAGISGALYTVQSGIVSPQFMTVPFSIEMVIWVAVGGRGTLLGAILGAVFINYAKSLVSEALPASWMF
IQGGLFILVVTALPEGVLGWIQGDGPRNLLQKFGLKRKIETYPSLEVNNKEGNNE

Specific function: Part Of The Binding-Protein-Dependent Transport System For Branched-Chain Amino Acids. Probably Responsible For The Translocation Of The Substrates Across The Membrane. [C]

COG id: COG4177

COG function: function code E; ABC-type branched-chain amino acid transport system, permease component

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41628; Mature: 41497

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLSKIKFDKKIVLSFWIILIALIIAAPTILPVFRLNLLGRYLSLSIVALGVDLIWGYTG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLSLGQGIFFALGGYCAAMYLQITSSSEFPNNIPEFFALYGVEKLPFFWEPFRSPVFTFF
HHHHCCHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHCHHHCCCHHHHHHHHHHHHH
AIWIIPALVAGLIGFLVFRNRIKGVYFSILTQASLLVFFNFFNGQQKLINGTNGLKTDVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHH
QLFGQMVGSESMQRIFFWITAILVIAAWFFAKWVVKGRFGNILIGIRDDEPRVRFTGYNP
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEECCCH
VIFKTIIFSIAGGLAGISGALYTVQSGIVSPQFMTVPFSIEMVIWVAVGGRGTLLGAILG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECEEEEEEEEEEECCCHHHHHHHHH
AVFINYAKSLVSEALPASWMFIQGGLFILVVTALPEGVLGWIQGDGPRNLLQKFGLKRKI
HHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCHHH
ETYPSLEVNNKEGNNE
HCCCCEEECCCCCCCC
>Mature Secondary Structure 
SLSKIKFDKKIVLSFWIILIALIIAAPTILPVFRLNLLGRYLSLSIVALGVDLIWGYTG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLSLGQGIFFALGGYCAAMYLQITSSSEFPNNIPEFFALYGVEKLPFFWEPFRSPVFTFF
HHHHCCHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHCHHHCCCHHHHHHHHHHHHH
AIWIIPALVAGLIGFLVFRNRIKGVYFSILTQASLLVFFNFFNGQQKLINGTNGLKTDVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHH
QLFGQMVGSESMQRIFFWITAILVIAAWFFAKWVVKGRFGNILIGIRDDEPRVRFTGYNP
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEECCCH
VIFKTIIFSIAGGLAGISGALYTVQSGIVSPQFMTVPFSIEMVIWVAVGGRGTLLGAILG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECEEEEEEEEEEECCCHHHHHHHHH
AVFINYAKSLVSEALPASWMFIQGGLFILVVTALPEGVLGWIQGDGPRNLLQKFGLKRKI
HHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCHHH
ETYPSLEVNNKEGNNE
HCCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]

Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA