Click here to switch to the map view.

The map label for this gene is yqgF [C]

Identifier: 123968388

GI number: 123968388

Start: 740730

End: 741191

Strand: Reverse

Name: yqgF [C]

Synonym: A9601_08551

Alternate gene names: 123968388

Gene position: 741191-740730 (Counterclockwise)

Preceding gene: 123968389

Following gene: 123968387

Centisome position: 44.39

GC content: 30.74

Gene sequence:

>462_bases
GTGAAATTTTGCAAACCCAAGCCCAAGTCAATTTTGAGTTTGGATATAGGCACCAAAAGAATAGGATTAGCTTATTGTGA
TCCCCTTTGCATAACATCAAATATACTTCCAGCAGTAAAACGATTTGAAAATAATCAAGAGATTAAAATCATTAGAAATT
ATATAAATGAATTTAATTTGACTGGTTTTATTGTGGGTATTCCGCTAGATGAGAAAGGTAAAATGACCACTCAAGCTATT
GACTGTAAAAATTACGGTCAATTACTTTCAAATGAATTAAAGCTTCCATTTTCTTATGTCAACGAACATAGTTCAACTTG
GGAATCTTCAGAAAGATTTGGAATAAAAAAAGATAAATCTGGATTGATTGATAGTTTTTCAGCAAAAATAATACTTGAAC
AATGGATCGAAGAAGGTCCTGAATTAGAAGAAATAGCTGGTAAACGTCAGATAAAATATTAG

Upstream 100 bases:

>100_bases
CCAAACAAGTAAATATAATAAATCAATCTTTGGAATCAATCTTTGAAAAATTAAGCCCACAAGGTAATCCATATCCATCT
CCTTTTCCATTAAAAACAAA

Downstream 100 bases:

>100_bases
TATTAAAAAGGATAGATAATTTTTAAATGAAAGAAGCCAATTCAAATGATAATTATGATGCACAGACTCTTTTATTAAAT
GACTCAAATGGAAACGAGCT

Product: endonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MKFCKPKPKSILSLDIGTKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRNYINEFNLTGFIVGIPLDEKGKMTTQAI
DCKNYGQLLSNELKLPFSYVNEHSSTWESSERFGIKKDKSGLIDSFSAKIILEQWIEEGPELEEIAGKRQIKY

Sequences:

>Translated_153_residues
MKFCKPKPKSILSLDIGTKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRNYINEFNLTGFIVGIPLDEKGKMTTQAI
DCKNYGQLLSNELKLPFSYVNEHSSTWESSERFGIKKDKSGLIDSFSAKIILEQWIEEGPELEEIAGKRQIKY
>Mature_153_residues
MKFCKPKPKSILSLDIGTKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRNYINEFNLTGFIVGIPLDEKGKMTTQAI
DCKNYGQLLSNELKLPFSYVNEHSSTWESSERFGIKKDKSGLIDSFSAKIILEQWIEEGPELEEIAGKRQIKY

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 17463; Mature: 17463

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFCKPKPKSILSLDIGTKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRNYINEFNL
CCCCCCCCCCEEEEECCCCEECHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
TGFIVGIPLDEKGKMTTQAIDCKNYGQLLSNELKLPFSYVNEHSSTWESSERFGIKKDKS
CEEEEEECCCCCCCCHHHHHCHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHCCCCCCCC
GLIDSFSAKIILEQWIEEGPELEEIAGKRQIKY
CCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCC
>Mature Secondary Structure
MKFCKPKPKSILSLDIGTKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRNYINEFNL
CCCCCCCCCCEEEEECCCCEECHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
TGFIVGIPLDEKGKMTTQAIDCKNYGQLLSNELKLPFSYVNEHSSTWESSERFGIKKDKS
CEEEEEECCCCCCCCHHHHHCHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHCCCCCCCC
GLIDSFSAKIILEQWIEEGPELEEIAGKRQIKY
CCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA