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The map label for this gene is ctpA [H]

Identifier: 123967885

GI number: 123967885

Start: 318414

End: 319709

Strand: Reverse

Name: ctpA [H]

Synonym: A9601_03481

Alternate gene names: 123967885

Gene position: 319709-318414 (Counterclockwise)

Preceding gene: 123967888

Following gene: 123967884

Centisome position: 19.15

GC content: 36.34

Gene sequence:

>1296_bases
ATGAATTCATCTTTTAACAAACTTTTAACATTCAAAAATTTGATCACTGCATCAATGATCATCGTTTTTTCTATCAATCT
TTTGTTGATGGAAAGAGTGGATGCTCTCAGTGATAGCAGGCAATTAGTACTTGATGCTTGGACCTTGGTAAACGAAGGTT
TTTATGATCCAGAAAAGTTTGATGAAATCCAATGGAAAAGAATTAGACAAAAAACATTACAGAAACAAATTGAAACAAGT
GAAGAGGCTTATTCCGCAATTGAAGACATGTTAAGACCTCTAGACGATCCCTACACGAGAGTTTTACGCCCCAAAGATTA
TGAGCTACTGAAATCAAGTAATTTTGGGAGTGAAATTAATGGTGTTGGGCTTCAATTAGGTGAAGATGACAACAATAAAG
TTAAAGTTATTTCTACTCTTGGGGGGTCGCCAGCTGAAGAAGCTGGAATAGTAAGCGGGGACATTATCGAGACAGTTGAT
GGAATCTCATCAGAAAAATTAGGGCTTGCAAGTACTGCCTCTAAGTTAAGAGGTGAGTCAGGGACAAAAGTTTTAGTTGA
ATTATCTACGGAATCAGGAGAAATTAGGGAAGTCGATTTAGAGAGGAGATCAGTAGATCTCAGACCAGTTAGAACAAAAA
GATTAAGAGACGATTCTCACACAATAGGATATTTAAGAATAACTCAATTTAGCGAAAGCGTACCCAAAAAAGTTGAAGAG
GCTCTTCAAGAGTTAAAAGAGAAAGAGGTTGAGGGCTTAATCTTGGATCTTAGAAATAATTCAGGGGGACTAGTAAGCTC
AGGTATTGCAGTTGCAGACACATTATTGAGTGAGAAACCCGTAGTCGAGACAAAAGATAGAAATGGAATCAAAGATGCAA
TTATTTCTCAAAAAGAGACATCTTTTGATGGACCAATGGTGACTTTAGTAAATAAAGGCACTGCAAGTGCCAGTGAAATA
CTTGCTGGTTCTTTAAAAGATAATGAGAGGTCAATTCTTATGGGAGAACAAACTTATGGTAAAGGTTTAATTCAATCCCT
AAAAAGTTTGGGAGAAGATAGTGGTATTGCTATAACAGTGGCTAGTTACTTAACACCAGATGGTAATAATATACAAGGCC
AGGGTATAACACCTGACAAATTACTTGAACTACCGGAAGCCAGTGATTTTGGAAGTACTGACGATAAATGGGTAAGGAAT
GCGGAATTATTATTAGGGTCGCTTCTAGAAAAAGAAGAAGTTCCAGTTCAAACAATTGATTTAAACAATGAAGAAATCAA
ATCTTTAAATGGCTAA

Upstream 100 bases:

>100_bases
CAGTCATAAACAGATGAAGAATTCGCCATCCAAAAAAAAATTAGCTTTGATATAAAGAGCTTACTTAAAATTCTTATACT
TGGTGTTAAGACTTAACCCA

Downstream 100 bases:

>100_bases
AGATTGAAAATAAAAAATCTTAAAAATATGAGTATTAAAAGAATTTTTCATGACCCAATTCATAAAGAAATAGTATTTGA
TGCAGGAAAGCCAGAAGAAT

Product: carboxyl-terminal protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 431; Mature: 431

Protein sequence:

>431_residues
MNSSFNKLLTFKNLITASMIIVFSINLLLMERVDALSDSRQLVLDAWTLVNEGFYDPEKFDEIQWKRIRQKTLQKQIETS
EEAYSAIEDMLRPLDDPYTRVLRPKDYELLKSSNFGSEINGVGLQLGEDDNNKVKVISTLGGSPAEEAGIVSGDIIETVD
GISSEKLGLASTASKLRGESGTKVLVELSTESGEIREVDLERRSVDLRPVRTKRLRDDSHTIGYLRITQFSESVPKKVEE
ALQELKEKEVEGLILDLRNNSGGLVSSGIAVADTLLSEKPVVETKDRNGIKDAIISQKETSFDGPMVTLVNKGTASASEI
LAGSLKDNERSILMGEQTYGKGLIQSLKSLGEDSGIAITVASYLTPDGNNIQGQGITPDKLLELPEASDFGSTDDKWVRN
AELLLGSLLEKEEVPVQTIDLNNEEIKSLNG

Sequences:

>Translated_431_residues
MNSSFNKLLTFKNLITASMIIVFSINLLLMERVDALSDSRQLVLDAWTLVNEGFYDPEKFDEIQWKRIRQKTLQKQIETS
EEAYSAIEDMLRPLDDPYTRVLRPKDYELLKSSNFGSEINGVGLQLGEDDNNKVKVISTLGGSPAEEAGIVSGDIIETVD
GISSEKLGLASTASKLRGESGTKVLVELSTESGEIREVDLERRSVDLRPVRTKRLRDDSHTIGYLRITQFSESVPKKVEE
ALQELKEKEVEGLILDLRNNSGGLVSSGIAVADTLLSEKPVVETKDRNGIKDAIISQKETSFDGPMVTLVNKGTASASEI
LAGSLKDNERSILMGEQTYGKGLIQSLKSLGEDSGIAITVASYLTPDGNNIQGQGITPDKLLELPEASDFGSTDDKWVRN
AELLLGSLLEKEEVPVQTIDLNNEEIKSLNG
>Mature_431_residues
MNSSFNKLLTFKNLITASMIIVFSINLLLMERVDALSDSRQLVLDAWTLVNEGFYDPEKFDEIQWKRIRQKTLQKQIETS
EEAYSAIEDMLRPLDDPYTRVLRPKDYELLKSSNFGSEINGVGLQLGEDDNNKVKVISTLGGSPAEEAGIVSGDIIETVD
GISSEKLGLASTASKLRGESGTKVLVELSTESGEIREVDLERRSVDLRPVRTKRLRDDSHTIGYLRITQFSESVPKKVEE
ALQELKEKEVEGLILDLRNNSGGLVSSGIAVADTLLSEKPVVETKDRNGIKDAIISQKETSFDGPMVTLVNKGTASASEI
LAGSLKDNERSILMGEQTYGKGLIQSLKSLGEDSGIAITVASYLTPDGNNIQGQGITPDKLLELPEASDFGSTDDKWVRN
AELLLGSLLEKEEVPVQTIDLNNEEIKSLNG

Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=346, Percent_Identity=27.4566473988439, Blast_Score=120, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 47308; Mature: 47308

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSSFNKLLTFKNLITASMIIVFSINLLLMERVDALSDSRQLVLDAWTLVNEGFYDPEKF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHH
DEIQWKRIRQKTLQKQIETSEEAYSAIEDMLRPLDDPYTRVLRPKDYELLKSSNFGSEIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHCCCCCCCCC
GVGLQLGEDDNNKVKVISTLGGSPAEEAGIVSGDIIETVDGISSEKLGLASTASKLRGES
CCEEEECCCCCCCEEEEEECCCCCCHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCC
GTKVLVELSTESGEIREVDLERRSVDLRPVRTKRLRDDSHTIGYLRITQFSESVPKKVEE
CCEEEEEEECCCCCEEEEEHHHHCCCCCCHHHHHCCCCCCEEEEEEEEHHHHHHHHHHHH
ALQELKEKEVEGLILDLRNNSGGLVSSGIAVADTLLSEKPVVETKDRNGIKDAIISQKET
HHHHHHHHHHCEEEEEEECCCCCEEECCHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCC
SFDGPMVTLVNKGTASASEILAGSLKDNERSILMGEQTYGKGLIQSLKSLGEDSGIAITV
CCCCCEEEEEECCCCCHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEE
ASYLTPDGNNIQGQGITPDKLLELPEASDFGSTDDKWVRNAELLLGSLLEKEEVPVQTID
EEEECCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
LNNEEIKSLNG
CCHHHHHCCCC
>Mature Secondary Structure
MNSSFNKLLTFKNLITASMIIVFSINLLLMERVDALSDSRQLVLDAWTLVNEGFYDPEKF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHH
DEIQWKRIRQKTLQKQIETSEEAYSAIEDMLRPLDDPYTRVLRPKDYELLKSSNFGSEIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHCCCCCCCCC
GVGLQLGEDDNNKVKVISTLGGSPAEEAGIVSGDIIETVDGISSEKLGLASTASKLRGES
CCEEEECCCCCCCEEEEEECCCCCCHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCC
GTKVLVELSTESGEIREVDLERRSVDLRPVRTKRLRDDSHTIGYLRITQFSESVPKKVEE
CCEEEEEEECCCCCEEEEEHHHHCCCCCCHHHHHCCCCCCEEEEEEEEHHHHHHHHHHHH
ALQELKEKEVEGLILDLRNNSGGLVSSGIAVADTLLSEKPVVETKDRNGIKDAIISQKET
HHHHHHHHHHCEEEEEEECCCCCEEECCHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCC
SFDGPMVTLVNKGTASASEILAGSLKDNERSILMGEQTYGKGLIQSLKSLGEDSGIAITV
CCCCCEEEEEECCCCCHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEE
ASYLTPDGNNIQGQGITPDKLLELPEASDFGSTDDKWVRNAELLLGSLLEKEEVPVQTID
EEEECCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
LNNEEIKSLNG
CCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8034700; 8058761; 8590279; 8905231 [H]