| Definition | Prochlorococcus marinus str. AS9601, complete genome. |
|---|---|
| Accession | NC_008816 |
| Length | 1,669,886 |
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The map label for this gene is holB [H]
Identifier: 123967683
GI number: 123967683
Start: 135909
End: 136871
Strand: Reverse
Name: holB [H]
Synonym: A9601_01461
Alternate gene names: 123967683
Gene position: 136871-135909 (Counterclockwise)
Preceding gene: 123967684
Following gene: 123967681
Centisome position: 8.2
GC content: 25.44
Gene sequence:
>963_bases ATGATTAAGGTTAAAAAAGATAATTTTTTCTTGAATGAAGAAGTCAATACCTGTCTTAACAACATAATTAAAAATAAATC ATTTGCTAATGGTTATATATTTTATGGTGCTGAAGGACTAGGTAAAAAGCAAACTGCTCTTCAATTTATACAAGAGATTT TCAAAAAGTCTTCACCAAGCAAAAATCTTGAAGAGAAAATTAAAAACAATAACCATCCTGATTTTTTAATTATTGAACCT GATTCTCTTTTAGAAACAAAAAGTTCAGGTGGTTCCGATCTTGAAAAAAAAACAAAAAGTGGATCTGAGATTATTAAAAT TGCTCAAATACGTAATATCAAAACTTTTCTTAGTCAAAAATCAATAAACTCAGAAAAAAAAATTGTTTTAATTATTGATG CACACCTCTTAAACGAAGCAGCCTCAAATTGCCTTTTAAAAACTCTAGAAGAACCTAGTAACGGCATTTTTATTTTACTA ACATCTAAATTAAACCTTCTCTTAGATACGATCATCTCAAGATGTCAAATCGTAAGATTTCGATCTTTTTCTAGTCAACA AATAAAGTCTATTTTAAAAGAATATTTAGATACTTCTAAATCAAATATTAATGCAAAATTAGAATTTGAAGATTTAATAA ACTCTGCAAATGGATCTCCAAATCAATTATTGAAAAATATTGAAATTTGGAATGATTTTTCAGATGAAATTATAATTAAA TTGAATTCTCCAGTAAAAAATAGTCTCGAAATATTAGAAATATCTAAATTAATATCTGAAAAATTAGAAATTTTTCAACA GATCAGTTTAGTAAATTTAATTCAAACTGTTTGGTGGAGAAAGACAAAAAATATAGGTTTAGTTAAAAAACTTGAAAAAT TAAAATACCTCTTAAGAAAAAGCATCCAACCAAGGTTGGCATGGGAAATTACTTTTTTAAAAATTTCGATGGAAGATATA TGA
Upstream 100 bases:
>100_bases CCAAACAAAAAAACTGGAAAGTAATATCAGCTTCACAAAATATTCAAACTATTTCTAATCAAATTAAAGAGACTTTGCTA AACAATTTTTCTAATAACAA
Downstream 100 bases:
>100_bases TTTTAATCTACTGCAGAATTAATCAAATCAGGATTTCTGGTTTTAATAAACTCCTGCCTTGCAGTTTCAACTTGAGAACC AATAGGTAACTCAAGACAAT
Product: DNA polymerase III subunit delta'
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 320; Mature: 320
Protein sequence:
>320_residues MIKVKKDNFFLNEEVNTCLNNIIKNKSFANGYIFYGAEGLGKKQTALQFIQEIFKKSSPSKNLEEKIKNNNHPDFLIIEP DSLLETKSSGGSDLEKKTKSGSEIIKIAQIRNIKTFLSQKSINSEKKIVLIIDAHLLNEAASNCLLKTLEEPSNGIFILL TSKLNLLLDTIISRCQIVRFRSFSSQQIKSILKEYLDTSKSNINAKLEFEDLINSANGSPNQLLKNIEIWNDFSDEIIIK LNSPVKNSLEILEISKLISEKLEIFQQISLVNLIQTVWWRKTKNIGLVKKLEKLKYLLRKSIQPRLAWEITFLKISMEDI
Sequences:
>Translated_320_residues MIKVKKDNFFLNEEVNTCLNNIIKNKSFANGYIFYGAEGLGKKQTALQFIQEIFKKSSPSKNLEEKIKNNNHPDFLIIEP DSLLETKSSGGSDLEKKTKSGSEIIKIAQIRNIKTFLSQKSINSEKKIVLIIDAHLLNEAASNCLLKTLEEPSNGIFILL TSKLNLLLDTIISRCQIVRFRSFSSQQIKSILKEYLDTSKSNINAKLEFEDLINSANGSPNQLLKNIEIWNDFSDEIIIK LNSPVKNSLEILEISKLISEKLEIFQQISLVNLIQTVWWRKTKNIGLVKKLEKLKYLLRKSIQPRLAWEITFLKISMEDI >Mature_320_residues MIKVKKDNFFLNEEVNTCLNNIIKNKSFANGYIFYGAEGLGKKQTALQFIQEIFKKSSPSKNLEEKIKNNNHPDFLIIEP DSLLETKSSGGSDLEKKTKSGSEIIKIAQIRNIKTFLSQKSINSEKKIVLIIDAHLLNEAASNCLLKTLEEPSNGIFILL TSKLNLLLDTIISRCQIVRFRSFSSQQIKSILKEYLDTSKSNINAKLEFEDLINSANGSPNQLLKNIEIWNDFSDEIIIK LNSPVKNSLEILEISKLISEKLEIFQQISLVNLIQTVWWRKTKNIGLVKKLEKLKYLLRKSIQPRLAWEITFLKISMEDI
Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria [H]
COG id: COG0470
COG function: function code L; ATPase involved in DNA replication
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004622 [H]
Pfam domain/function: NA
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 36633; Mature: 36633
Theoretical pI: Translated: 9.91; Mature: 9.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKVKKDNFFLNEEVNTCLNNIIKNKSFANGYIFYGAEGLGKKQTALQFIQEIFKKSSPS CEEEECCCEEECHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC KNLEEKIKNNNHPDFLIIEPDSLLETKSSGGSDLEKKTKSGSEIIKIAQIRNIKTFLSQK CCHHHHHCCCCCCCEEEECCHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHH SINSEKKIVLIIDAHLLNEAASNCLLKTLEEPSNGIFILLTSKLNLLLDTIISRCQIVRF CCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHH RSFSSQQIKSILKEYLDTSKSNINAKLEFEDLINSANGSPNQLLKNIEIWNDFSDEIIIK HCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEE LNSPVKNSLEILEISKLISEKLEIFQQISLVNLIQTVWWRKTKNIGLVKKLEKLKYLLRK ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH SIQPRLAWEITFLKISMEDI CCCCCEEEEEEEEEEEECCC >Mature Secondary Structure MIKVKKDNFFLNEEVNTCLNNIIKNKSFANGYIFYGAEGLGKKQTALQFIQEIFKKSSPS CEEEECCCEEECHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC KNLEEKIKNNNHPDFLIIEPDSLLETKSSGGSDLEKKTKSGSEIIKIAQIRNIKTFLSQK CCHHHHHCCCCCCCEEEECCHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHH SINSEKKIVLIIDAHLLNEAASNCLLKTLEEPSNGIFILLTSKLNLLLDTIISRCQIVRF CCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHH RSFSSQQIKSILKEYLDTSKSNINAKLEFEDLINSANGSPNQLLKNIEIWNDFSDEIIIK HCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEE LNSPVKNSLEILEISKLISEKLEIFQQISLVNLIQTVWWRKTKNIGLVKKLEKLKYLLRK ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH SIQPRLAWEITFLKISMEDI CCCCCEEEEEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377 [H]