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The map label for this gene is mgs1 [H]

Identifier: 123967627

GI number: 123967627

Start: 94037

End: 95326

Strand: Direct

Name: mgs1 [H]

Synonym: A9601_00901

Alternate gene names: 123967627

Gene position: 94037-95326 (Clockwise)

Preceding gene: 123967626

Following gene: 123967629

Centisome position: 5.63

GC content: 30.23

Gene sequence:

>1290_bases
ATGCATTCAGAAAATTTATTTACTAATTATTCTCAAATAGAAAACAATGCACCTTTGGCAGATAAATTAAGACCAAAGAA
TTTGGAAGATTTTTTTGGTCAACAACCAATCCTGAATGAGAATTCGCTTTTAAGAAGTGCAATATTAAATGATAAGGTTA
GTAATTTTATTTTTTCTGGCCCTCCGGGTGTTGGAAAAACTACTCTAATTGAAATTATTTCTTTTAATACGCGGTCAAAA
TTAATTAGGTTAAATGCAGTATTATCAAGTGTTAAAGAATTAAGAAATGAAATCGCTAATGCAAAAGATAGATTAATAAA
TTCAAAAAGAAAAACAATTTTATTTATCGATGAGGTTCATAGATTTACATCACTTCAGCAAGATGCTTTATTACCTTCAA
TAGAAAATGGAACTATAACTTTTATTGGTGCTACAACTGAAAACCCTTTCTTTGCTGTTAATAAAGCGCTTGTTAGCAGG
TCTCGTATTTTCACATTACTTCCTTTGGCAGAAAATGATTTACAGAAAATAATACAAAAAGTCATTAATCACTATTCAAA
ACAAAAAGATTCAAAAAAGGTTTATTTAACTCAAGATGCTATAAGTCATTTAATTAAATTTTCTGGCGGAGATGCAAGGA
CATTAATCAATGCGCTAGAGATGGCCATAGAAACAACTTCTGAAAATGATGCTAAAGAAATCAATATTAATCTCTCAATA
GCAGAGGATGCACTACAAAAGAAAAATATTGTTTACGATAAAAATGGTCAAAATCACTACGATGTAATAAGTGCCTTTAT
CAAGTCCATTAGAGGCTCTGATCCAGATGCAACTTTATTCTGGCTTGCCAATATGCTGGAGGCTGGTGAAGATCCTAATT
TTATTTTTAGACGACTTCTTATATCTGCCAGTGAAGATATTGGAATAGCTGATCCTAATGCCATAGTAGTTGTACAATCC
TGTTGTGATGCTTTCGATAGAGTTGGTTTTCCAGAAGGATTATATTTTTTAACGCAGGCTTCTTTATACTTAGCTATTTC
TCTAAAAAGTAATAGTACGAAAAGTATTTTTAAAGCAATTGAAACAATCAAATCTACTAATGCTTTTGATGTTCCACTTC
ATTTAAAAAATAATTCTAATAGTTATGTAAATCCTCATAATTATCCAGGTAATTGGGTCGTACAAGAATATCTTCCTAAA
TCTTTAAGAGGTTTCAAAATATGGGAACCAAATAATAATGGATGGGAAAAAACTCAATATGATGAACTGCTTAGAAGAAA
AGAAAATTAA

Upstream 100 bases:

>100_bases
TGATTTAGACGCTTTATTGAACATTTCAAAACTTACTCAAATGGAAAATCCTACAGTAATTACATAGAATTGAAAGTAAT
AATTTTTTGATTTTATTTAT

Downstream 100 bases:

>100_bases
AAATTTTTCGAACAACAAATAATCTCAGGATATAAAGAAGTTCTTTCTTCGTAGGCTAAAGCGATAGTCCAATTATGGAA
GTTAATCTGTGAATAATTTA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MHSENLFTNYSQIENNAPLADKLRPKNLEDFFGQQPILNENSLLRSAILNDKVSNFIFSGPPGVGKTTLIEIISFNTRSK
LIRLNAVLSSVKELRNEIANAKDRLINSKRKTILFIDEVHRFTSLQQDALLPSIENGTITFIGATTENPFFAVNKALVSR
SRIFTLLPLAENDLQKIIQKVINHYSKQKDSKKVYLTQDAISHLIKFSGGDARTLINALEMAIETTSENDAKEININLSI
AEDALQKKNIVYDKNGQNHYDVISAFIKSIRGSDPDATLFWLANMLEAGEDPNFIFRRLLISASEDIGIADPNAIVVVQS
CCDAFDRVGFPEGLYFLTQASLYLAISLKSNSTKSIFKAIETIKSTNAFDVPLHLKNNSNSYVNPHNYPGNWVVQEYLPK
SLRGFKIWEPNNNGWEKTQYDELLRRKEN

Sequences:

>Translated_429_residues
MHSENLFTNYSQIENNAPLADKLRPKNLEDFFGQQPILNENSLLRSAILNDKVSNFIFSGPPGVGKTTLIEIISFNTRSK
LIRLNAVLSSVKELRNEIANAKDRLINSKRKTILFIDEVHRFTSLQQDALLPSIENGTITFIGATTENPFFAVNKALVSR
SRIFTLLPLAENDLQKIIQKVINHYSKQKDSKKVYLTQDAISHLIKFSGGDARTLINALEMAIETTSENDAKEININLSI
AEDALQKKNIVYDKNGQNHYDVISAFIKSIRGSDPDATLFWLANMLEAGEDPNFIFRRLLISASEDIGIADPNAIVVVQS
CCDAFDRVGFPEGLYFLTQASLYLAISLKSNSTKSIFKAIETIKSTNAFDVPLHLKNNSNSYVNPHNYPGNWVVQEYLPK
SLRGFKIWEPNNNGWEKTQYDELLRRKEN
>Mature_429_residues
MHSENLFTNYSQIENNAPLADKLRPKNLEDFFGQQPILNENSLLRSAILNDKVSNFIFSGPPGVGKTTLIEIISFNTRSK
LIRLNAVLSSVKELRNEIANAKDRLINSKRKTILFIDEVHRFTSLQQDALLPSIENGTITFIGATTENPFFAVNKALVSR
SRIFTLLPLAENDLQKIIQKVINHYSKQKDSKKVYLTQDAISHLIKFSGGDARTLINALEMAIETTSENDAKEININLSI
AEDALQKKNIVYDKNGQNHYDVISAFIKSIRGSDPDATLFWLANMLEAGEDPNFIFRRLLISASEDIGIADPNAIVVVQS
CCDAFDRVGFPEGLYFLTQASLYLAISLKSNSTKSIFKAIETIKSTNAFDVPLHLKNNSNSYVNPHNYPGNWVVQEYLPK
SLRGFKIWEPNNNGWEKTQYDELLRRKEN

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=442, Percent_Identity=36.4253393665158, Blast_Score=276, Evalue=2e-74,
Organism=Homo sapiens, GI18426904, Length=442, Percent_Identity=32.579185520362, Blast_Score=227, Evalue=2e-59,
Organism=Escherichia coli, GI1787119, Length=411, Percent_Identity=38.1995133819951, Blast_Score=292, Evalue=2e-80,
Organism=Saccharomyces cerevisiae, GI6324111, Length=424, Percent_Identity=36.3207547169811, Blast_Score=258, Evalue=1e-69,
Organism=Saccharomyces cerevisiae, GI6324039, Length=266, Percent_Identity=28.1954887218045, Blast_Score=87, Evalue=4e-18,
Organism=Drosophila melanogaster, GI19921076, Length=224, Percent_Identity=26.7857142857143, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48406; Mature: 48406

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSENLFTNYSQIENNAPLADKLRPKNLEDFFGQQPILNENSLLRSAILNDKVSNFIFSG
CCCCCCCCCHHHHCCCCCCHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCEECC
PPGVGKTTLIEIISFNTRSKLIRLNAVLSSVKELRNEIANAKDRLINSKRKTILFIDEVH
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHH
RFTSLQQDALLPSIENGTITFIGATTENPFFAVNKALVSRSRIFTLLPLAENDLQKIIQK
HHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHEEEEECCCHHHHHHHHHH
VINHYSKQKDSKKVYLTQDAISHLIKFSGGDARTLINALEMAIETTSENDAKEININLSI
HHHHHHCCCCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEE
AEDALQKKNIVYDKNGQNHYDVISAFIKSIRGSDPDATLFWLANMLEAGEDPNFIFRRLL
HHHHHHHCCCEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
ISASEDIGIADPNAIVVVQSCCDAFDRVGFPEGLYFLTQASLYLAISLKSNSTKSIFKAI
HHCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCHHHHEECEEEEEEEECCCCHHHHHHHH
ETIKSTNAFDVPLHLKNNSNSYVNPHNYPGNWVVQEYLPKSLRGFKIWEPNNNGWEKTQY
HHHHCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCHHHH
DELLRRKEN
HHHHHHCCC
>Mature Secondary Structure
MHSENLFTNYSQIENNAPLADKLRPKNLEDFFGQQPILNENSLLRSAILNDKVSNFIFSG
CCCCCCCCCHHHHCCCCCCHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCEECC
PPGVGKTTLIEIISFNTRSKLIRLNAVLSSVKELRNEIANAKDRLINSKRKTILFIDEVH
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHH
RFTSLQQDALLPSIENGTITFIGATTENPFFAVNKALVSRSRIFTLLPLAENDLQKIIQK
HHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHEEEEECCCHHHHHHHHHH
VINHYSKQKDSKKVYLTQDAISHLIKFSGGDARTLINALEMAIETTSENDAKEININLSI
HHHHHHCCCCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEE
AEDALQKKNIVYDKNGQNHYDVISAFIKSIRGSDPDATLFWLANMLEAGEDPNFIFRRLL
HHHHHHHCCCEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
ISASEDIGIADPNAIVVVQSCCDAFDRVGFPEGLYFLTQASLYLAISLKSNSTKSIFKAI
HHCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCHHHHEECEEEEEEEECCCCHHHHHHHH
ETIKSTNAFDVPLHLKNNSNSYVNPHNYPGNWVVQEYLPKSLRGFKIWEPNNNGWEKTQY
HHHHCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCHHHH
DELLRRKEN
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]