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The map label for this gene is cydB [H]

Identifier: 121999197

GI number: 121999197

Start: 2655934

End: 2656929

Strand: Reverse

Name: cydB [H]

Synonym: Hhal_2419

Alternate gene names: 121999197

Gene position: 2656929-2655934 (Counterclockwise)

Preceding gene: 121999198

Following gene: 121999196

Centisome position: 99.2

GC content: 65.36

Gene sequence:

>996_bases
ATGGAACTAATCGACATCACCATCATCTGGATGGGGATCATCGGCCTCGGGGTGTTCATGTACATCCTGCTCGACGGCTT
CGACCTCGGCGTCGGGATTCTCTATCCGTTTACGCCCAGCGAGCAGGTCCGGGACGACCTGATGAACAGCGTCGCCCCGG
TCTGGGATGGCAACGAGACCTGGCTGATCCTCGGTGGCGCTGGCCTGCTGGCCGCCTTCCCGGCGGTCTACGCCATCTAC
CTGCCGGCGCTCTACCTGGGCGTCTTCCTGATGCTCGCCGGCCTGATCTTCCGCGGCGTGGCCTTCGAGTTCCGTTTTAA
ATCCTCGAAGACACGCGGATTCTGGAACGCCGCCTTCGCCGGCGGCTCGATCCTCGCCGCCGCGGCCCAGGGCTTCGTGG
TCGGCACCTACATCCAGGGCTTCGAGGTGGATGGCTTCACCTACGTCGGCGGGCCCTTCGACTGGCTGACGCCGTTCACC
GTCTTCACCGCGGTCTCGCTGGTGGTCGGCTATGCGCTGCTTGGCGCCGCCTGGGGCATCCTCAAGACCGAGGGTGCCAC
GCAGCGGTGGCTCTACCGTGTGGCCCCGTGGCTGCTCCTGCTCTTGGTGGTCTGTCTGCTGGGCATCTCGGTCTGGACCC
CGCTGACCTCCGAGCGTGTACTGGAGCGCTGGCAGGAGGCGTGGACCATGCTCTGGCCCTTGCCCCTGCTCGGTGCGTTG
GCCGTAGGGCTGTTCTGGTCCGCGTTGCGCAAGCGCCAGGAACTGGTGCCGTTCATCGCCGGGCTTGGCCTGTTCGTCAC
CGTCTACCTCGGGTTGGTTGCCAGCCAGTGGCCGTACATGGTGCCGCCGGAGATCACTTTCCGGGACGCGGCATCGGCCC
CGGAGGCGCAGCTCTTCCTCCTGCTTGGCATCCTCTTCCTGCTGCCGATCATCATCGGCTATACGGTCTGGACCTACTGG
ATCTTCCGCGGGAAGGTGCAGGGCGGCTACCACTGA

Upstream 100 bases:

>100_bases
CGTGGAGGAGCCGGCGCACGCCAAGCGCCCCTTCTCGGCGGCGGATGTCCCGTTCGACGACGACCCGGATTTCTCCACCA
GCTCGCGGTGAGGTAGCGAC

Downstream 100 bases:

>100_bases
GCCTTGCCGGTGGCCGATGAACCCCGCGGCGGCGAGCGGGCGGCGGGGCGCTGGCTGCTCGACCAGGCCCGCCAGGCCCG
CCCCGCGATGGCCGCGACGG

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MELIDITIIWMGIIGLGVFMYILLDGFDLGVGILYPFTPSEQVRDDLMNSVAPVWDGNETWLILGGAGLLAAFPAVYAIY
LPALYLGVFLMLAGLIFRGVAFEFRFKSSKTRGFWNAAFAGGSILAAAAQGFVVGTYIQGFEVDGFTYVGGPFDWLTPFT
VFTAVSLVVGYALLGAAWGILKTEGATQRWLYRVAPWLLLLLVVCLLGISVWTPLTSERVLERWQEAWTMLWPLPLLGAL
AVGLFWSALRKRQELVPFIAGLGLFVTVYLGLVASQWPYMVPPEITFRDAASAPEAQLFLLLGILFLLPIIIGYTVWTYW
IFRGKVQGGYH

Sequences:

>Translated_331_residues
MELIDITIIWMGIIGLGVFMYILLDGFDLGVGILYPFTPSEQVRDDLMNSVAPVWDGNETWLILGGAGLLAAFPAVYAIY
LPALYLGVFLMLAGLIFRGVAFEFRFKSSKTRGFWNAAFAGGSILAAAAQGFVVGTYIQGFEVDGFTYVGGPFDWLTPFT
VFTAVSLVVGYALLGAAWGILKTEGATQRWLYRVAPWLLLLLVVCLLGISVWTPLTSERVLERWQEAWTMLWPLPLLGAL
AVGLFWSALRKRQELVPFIAGLGLFVTVYLGLVASQWPYMVPPEITFRDAASAPEAQLFLLLGILFLLPIIIGYTVWTYW
IFRGKVQGGYH
>Mature_331_residues
MELIDITIIWMGIIGLGVFMYILLDGFDLGVGILYPFTPSEQVRDDLMNSVAPVWDGNETWLILGGAGLLAAFPAVYAIY
LPALYLGVFLMLAGLIFRGVAFEFRFKSSKTRGFWNAAFAGGSILAAAAQGFVVGTYIQGFEVDGFTYVGGPFDWLTPFT
VFTAVSLVVGYALLGAAWGILKTEGATQRWLYRVAPWLLLLLVVCLLGISVWTPLTSERVLERWQEAWTMLWPLPLLGAL
AVGLFWSALRKRQELVPFIAGLGLFVTVYLGLVASQWPYMVPPEITFRDAASAPEAQLFLLLGILFLLPIIIGYTVWTYW
IFRGKVQGGYH

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=359, Percent_Identity=29.2479108635098, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1787213, Length=357, Percent_Identity=28.2913165266106, Blast_Score=106, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36632; Mature: 36632

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELIDITIIWMGIIGLGVFMYILLDGFDLGVGILYPFTPSEQVRDDLMNSVAPVWDGNET
CCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCE
WLILGGAGLLAAFPAVYAIYLPALYLGVFLMLAGLIFRGVAFEFRFKSSKTRGFWNAAFA
EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHC
GGSILAAAAQGFVVGTYIQGFEVDGFTYVGGPFDWLTPFTVFTAVSLVVGYALLGAAWGI
CCHHHHHHHCCCEEEEEECCEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKTEGATQRWLYRVAPWLLLLLVVCLLGISVWTPLTSERVLERWQEAWTMLWPLPLLGAL
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AVGLFWSALRKRQELVPFIAGLGLFVTVYLGLVASQWPYMVPPEITFRDAASAPEAQLFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
LLGILFLLPIIIGYTVWTYWIFRGKVQGGYH
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MELIDITIIWMGIIGLGVFMYILLDGFDLGVGILYPFTPSEQVRDDLMNSVAPVWDGNET
CCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCE
WLILGGAGLLAAFPAVYAIYLPALYLGVFLMLAGLIFRGVAFEFRFKSSKTRGFWNAAFA
EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHC
GGSILAAAAQGFVVGTYIQGFEVDGFTYVGGPFDWLTPFTVFTAVSLVVGYALLGAAWGI
CCHHHHHHHCCCEEEEEECCEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKTEGATQRWLYRVAPWLLLLLVVCLLGISVWTPLTSERVLERWQEAWTMLWPLPLLGAL
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AVGLFWSALRKRQELVPFIAGLGLFVTVYLGLVASQWPYMVPPEITFRDAASAPEAQLFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
LLGILFLLPIIIGYTVWTYWIFRGKVQGGYH
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]