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The map label for this gene is cydA [H]

Identifier: 121999198

GI number: 121999198

Start: 2656939

End: 2658351

Strand: Reverse

Name: cydA [H]

Synonym: Hhal_2420

Alternate gene names: 121999198

Gene position: 2658351-2656939 (Counterclockwise)

Preceding gene: 121999199

Following gene: 121999197

Centisome position: 99.25

GC content: 65.53

Gene sequence:

>1413_bases
ATGGAAGCCCTCGACCCGCTGCTCTTGTCGCGGATGCAATTCGCTTTCGTGGTCTCGTTCCACGCCCTGTTCCCGGTGTT
CACCATCGGGCTGGCGGCCTACATCGCCGTCCTCGAGGCGCTGTGGTACCGCACCGACAGCCCGACCTACCGGCGCCTGT
CGGAGTTCTGGATCAAGATCTTCGCCGTGGTCTTCGGTATGGGCGTGGTCTCCGGCGTGGTCATGTCCTTCCAGTTCGGC
ACCAACTGGAGTGAGTTCTCCTTCGCCACGGCCAACTTCCTCGGCCCGATCCTCTCCTACGAGGTGCTGACCGCCTTCTT
CCTCGAGGCCGTGTTCCTCGGCATTCTGCTCTTCGGCCGCGACCGGGTCCCGCGGGGAACGCACCTGTTCGCCGCCTGTA
TGGTGGCCATCGGCACGTTCATCTCCTCGTTCTGGATCCTCTCCGCCAACTCCTGGATGCACACCCCGCAGGGCTTCGAG
TTCCGCGATGGCATCGTCCACGTCACCTCCTGGGCCGAGGCGATCTTCAACCCCTCGCTGTGGCCCCGCTTCGGGCACGT
GGCGCTGGCCTCGCTGCTCACTGGTGGTTTCGTCGTTGCCGGCGTCAGCGCCTACTTCCTGCTGCGCAACCGCGCCGTGG
AGATGAACCGCAAGGCGCTGAGCATGACCCTGTGGCTGCTGCTGCTGGTCGCCCCGGCGCAGATCTTCATGGGCGACATC
CACGGGCTGAACTCCTTTGAGCATCAGCCCACCAAAGTCGCCGCCATGGAAGGCGCCTGGGAGACCCGCGAGGGCGCCCC
CTTGTACCTCTTCGCTATCCCCGACTCGGCCGCCGAGACCAACCACCTGGCCGTGGGCATTCCCAATCTCGCCAGTTTCA
TCCTGACCCACCAGTGGGACGGTGAGGTGCCCGGGCTCAAGGAGGTCAGTGCCGAGGAGCGGCCGCCGGTGGGGATCGTC
TTCTGGTCGTTCCGCATCATGGTCGGGATCGGCGTGGTGATGCTGCTGGTGGCTCTGTGGAGCGCCTGGCTGCGCATGCG
CGGTCGGCTGTTTGAGAGTCGACCGTTCCTGCACACACTCCAGTTGATGATCCCGCTGCCCTTCGTGGCGGTGCTCACCG
GCTGGTTCGTTACCGAGATCGGCCGTCAGCCGTGGTTGATCTACGGCCAGATGACCCTGGCCGAAGGGGTGACGCCGTCG
CTGACCGGCTGGATGGCGCTGGTGACCCTGATCGGGTATGTGGTGGTCTACGCCGTGATCTTTACTGCCGGCCTCTACTA
CGTCACGCGGATCGTGCGTAACGGGCCGGAGGGGGTGGGCTCCGTGGAGGAGCCGGCGCACGCCAAGCGCCCCTTCTCGG
CGGCGGATGTCCCGTTCGACGACGACCCGGATTTCTCCACCAGCTCGCGGTGA

Upstream 100 bases:

>100_bases
CCCCTTTAGTTAAGGTTTCGTTGATTCAAGCGCCCGATCGGCGCTGCATGCACCGCCCGGCGGTGCCGGATTCAGTTCTC
AGGCAGGAGGTGCCGCTACG

Downstream 100 bases:

>100_bases
GGTAGCGACATGGAACTAATCGACATCACCATCATCTGGATGGGGATCATCGGCCTCGGGGTGTTCATGTACATCCTGCT
CGACGGCTTCGACCTCGGCG

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 470; Mature: 470

Protein sequence:

>470_residues
MEALDPLLLSRMQFAFVVSFHALFPVFTIGLAAYIAVLEALWYRTDSPTYRRLSEFWIKIFAVVFGMGVVSGVVMSFQFG
TNWSEFSFATANFLGPILSYEVLTAFFLEAVFLGILLFGRDRVPRGTHLFAACMVAIGTFISSFWILSANSWMHTPQGFE
FRDGIVHVTSWAEAIFNPSLWPRFGHVALASLLTGGFVVAGVSAYFLLRNRAVEMNRKALSMTLWLLLLVAPAQIFMGDI
HGLNSFEHQPTKVAAMEGAWETREGAPLYLFAIPDSAAETNHLAVGIPNLASFILTHQWDGEVPGLKEVSAEERPPVGIV
FWSFRIMVGIGVVMLLVALWSAWLRMRGRLFESRPFLHTLQLMIPLPFVAVLTGWFVTEIGRQPWLIYGQMTLAEGVTPS
LTGWMALVTLIGYVVVYAVIFTAGLYYVTRIVRNGPEGVGSVEEPAHAKRPFSAADVPFDDDPDFSTSSR

Sequences:

>Translated_470_residues
MEALDPLLLSRMQFAFVVSFHALFPVFTIGLAAYIAVLEALWYRTDSPTYRRLSEFWIKIFAVVFGMGVVSGVVMSFQFG
TNWSEFSFATANFLGPILSYEVLTAFFLEAVFLGILLFGRDRVPRGTHLFAACMVAIGTFISSFWILSANSWMHTPQGFE
FRDGIVHVTSWAEAIFNPSLWPRFGHVALASLLTGGFVVAGVSAYFLLRNRAVEMNRKALSMTLWLLLLVAPAQIFMGDI
HGLNSFEHQPTKVAAMEGAWETREGAPLYLFAIPDSAAETNHLAVGIPNLASFILTHQWDGEVPGLKEVSAEERPPVGIV
FWSFRIMVGIGVVMLLVALWSAWLRMRGRLFESRPFLHTLQLMIPLPFVAVLTGWFVTEIGRQPWLIYGQMTLAEGVTPS
LTGWMALVTLIGYVVVYAVIFTAGLYYVTRIVRNGPEGVGSVEEPAHAKRPFSAADVPFDDDPDFSTSSR
>Mature_470_residues
MEALDPLLLSRMQFAFVVSFHALFPVFTIGLAAYIAVLEALWYRTDSPTYRRLSEFWIKIFAVVFGMGVVSGVVMSFQFG
TNWSEFSFATANFLGPILSYEVLTAFFLEAVFLGILLFGRDRVPRGTHLFAACMVAIGTFISSFWILSANSWMHTPQGFE
FRDGIVHVTSWAEAIFNPSLWPRFGHVALASLLTGGFVVAGVSAYFLLRNRAVEMNRKALSMTLWLLLLVAPAQIFMGDI
HGLNSFEHQPTKVAAMEGAWETREGAPLYLFAIPDSAAETNHLAVGIPNLASFILTHQWDGEVPGLKEVSAEERPPVGIV
FWSFRIMVGIGVVMLLVALWSAWLRMRGRLFESRPFLHTLQLMIPLPFVAVLTGWFVTEIGRQPWLIYGQMTLAEGVTPS
LTGWMALVTLIGYVVVYAVIFTAGLYYVTRIVRNGPEGVGSVEEPAHAKRPFSAADVPFDDDPDFSTSSR

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=515, Percent_Identity=31.6504854368932, Blast_Score=238, Evalue=8e-64,
Organism=Escherichia coli, GI87081779, Length=325, Percent_Identity=36, Blast_Score=212, Evalue=5e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 52246; Mature: 52246

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS00133 CARBOXYPEPT_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]