| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121999145
Identifier: 121999145
GI number: 121999145
Start: 2600665
End: 2601099
Strand: Reverse
Name: 121999145
Synonym: Hhal_2367
Alternate gene names: NA
Gene position: 2601099-2600665 (Counterclockwise)
Preceding gene: 121999147
Following gene: 121999143
Centisome position: 97.11
GC content: 71.03
Gene sequence:
>435_bases ATGGCTGACCCCGCGCTAACCCGACGTTTCGCAGTGCTTCGCCCGGTCAGGCTGGCCCTTGGCGCCCTGGCGTTGCTGAT CGCCGGGTGCAGCGGGGCCGGCGAGTCCCAGGTCTGGCGGGGCCAGCAGCACGACGCCGAAGGCCCGGCCTGCGTGCTCA TCGAGTCCGGGGCGCAATGGGACGAAGCCTGGGCTCAGGTGGGCGAGGACCCGCCGATGGAGTGGCCCGGGGGCCGCGCT GTGGGCGTGCTGTTCCTGGATAAGTCCCGTCCGTCAGGTGGTTACCGGCCGGAATTGGAAGGAGTGGCGGATGGCGAGGT CCGGGTTCGGGTGACGCCTCCGGATGGCCCGGCCACTACGGTGATCAGCCAGCCGTGGCTGATCACCGTGGTCCCGGAGG GCGGTGTCTCCCGCGTAACCTGCCGGACGCCCTGA
Upstream 100 bases:
>100_bases GGTCGGGAATCCCTAGGGGCTGCAGGGTTCGGCAAGGGAGGCCCCCGCTCATGCATACTAGGAACCATTAAGCCCGGTCT CGGGCCTGCCAGGAGGCGGC
Downstream 100 bases:
>100_bases AGGGTGCGGTCTAAGCCTGGCGGGACGGGTCCGCACGCCCCTGTGCCACCTCGCGCGCCCGGCTGTTGAACTCCGCCAGG AATGCGCCGAAGACGCCGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 144; Mature: 143
Protein sequence:
>144_residues MADPALTRRFAVLRPVRLALGALALLIAGCSGAGESQVWRGQQHDAEGPACVLIESGAQWDEAWAQVGEDPPMEWPGGRA VGVLFLDKSRPSGGYRPELEGVADGEVRVRVTPPDGPATTVISQPWLITVVPEGGVSRVTCRTP
Sequences:
>Translated_144_residues MADPALTRRFAVLRPVRLALGALALLIAGCSGAGESQVWRGQQHDAEGPACVLIESGAQWDEAWAQVGEDPPMEWPGGRA VGVLFLDKSRPSGGYRPELEGVADGEVRVRVTPPDGPATTVISQPWLITVVPEGGVSRVTCRTP >Mature_143_residues ADPALTRRFAVLRPVRLALGALALLIAGCSGAGESQVWRGQQHDAEGPACVLIESGAQWDEAWAQVGEDPPMEWPGGRAV GVLFLDKSRPSGGYRPELEGVADGEVRVRVTPPDGPATTVISQPWLITVVPEGGVSRVTCRTP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15221; Mature: 15090
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADPALTRRFAVLRPVRLALGALALLIAGCSGAGESQVWRGQQHDAEGPACVLIESGAQW CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCEEEEECCCCCH DEAWAQVGEDPPMEWPGGRAVGVLFLDKSRPSGGYRPELEGVADGEVRVRVTPPDGPATT HHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEE VISQPWLITVVPEGGVSRVTCRTP EEECCEEEEEECCCCCEEEEEECC >Mature Secondary Structure ADPALTRRFAVLRPVRLALGALALLIAGCSGAGESQVWRGQQHDAEGPACVLIESGAQW CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCEEEEECCCCCH DEAWAQVGEDPPMEWPGGRAVGVLFLDKSRPSGGYRPELEGVADGEVRVRVTPPDGPATT HHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEE VISQPWLITVVPEGGVSRVTCRTP EEECCEEEEEECCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA