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The map label for this gene is yafM [H]

Identifier: 121999023

GI number: 121999023

Start: 2457965

End: 2458450

Strand: Reverse

Name: yafM [H]

Synonym: Hhal_2244

Alternate gene names: 121999023

Gene position: 2458450-2457965 (Counterclockwise)

Preceding gene: 121999025

Following gene: 121999021

Centisome position: 91.79

GC content: 77.57

Gene sequence:

>486_bases
ATGCACCAGGAGGTGTCCCCGCAGGGGCGGTGTGTCCGCTTCTGCCTGACCACGCACGGCCGCCATCCCTGGCTGGCCCG
GCCGGAGGCCGTGCAGCGGCTGCGGACCGCTTTTCGGCAAGTGGCCCGGCGCCGGCCGCTGGTCTGGGATGCCGCCGTGG
TCCTGCCCGATGCCGTCCACGGCCTGTGGCGGCTGCCCCCGGATGACCCCGATCCGCGCCCCCGCTGGCAGGCGGCCAAG
GCCCACTGTACCCGGCATCTGCGCCACTGGCCCGGGCTGCCCCGCGGGCGGCTGTGGCGGCCCGGCGTGGCGTGGTGGGA
CGTGGATCCGGAGGCGTGGCGGGAGGCGCTGGACCACATCCACTGGGAGCCGGTCCGCCGCGGGCTGGTCGGCCGGCCCG
AGGGGTGGCGCTACAGCTCCTACCGGCGCTGCCTGGCCGCCGGGCTCTACCCGGCGGGCTGGTCCGGCCCGCAGGGGGGC
GCGTGA

Upstream 100 bases:

>100_bases
GCCGGCTGCCAGCGCCGCGCGCCGCTGTGCCCCGGCCGATTGACAGCCGTTGGCGGCCTGGCACGATAAAGGGGCGCGAC
GCGTTCAGGGAGGAGCGCGC

Downstream 100 bases:

>100_bases
CCGGGGTCGTCGCCGGCCAGGTTCTGCATCACCCCGCGCAGGTAGCGCGGGTTGACCAGCTTGATGCCGATGCGTTCGGC
GAACTTGCGCATCCCCTCAT

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MHQEVSPQGRCVRFCLTTHGRHPWLARPEAVQRLRTAFRQVARRRPLVWDAAVVLPDAVHGLWRLPPDDPDPRPRWQAAK
AHCTRHLRHWPGLPRGRLWRPGVAWWDVDPEAWREALDHIHWEPVRRGLVGRPEGWRYSSYRRCLAAGLYPAGWSGPQGG
A

Sequences:

>Translated_161_residues
MHQEVSPQGRCVRFCLTTHGRHPWLARPEAVQRLRTAFRQVARRRPLVWDAAVVLPDAVHGLWRLPPDDPDPRPRWQAAK
AHCTRHLRHWPGLPRGRLWRPGVAWWDVDPEAWREALDHIHWEPVRRGLVGRPEGWRYSSYRRCLAAGLYPAGWSGPQGG
A
>Mature_161_residues
MHQEVSPQGRCVRFCLTTHGRHPWLARPEAVQRLRTAFRQVARRRPLVWDAAVVLPDAVHGLWRLPPDDPDPRPRWQAAK
AHCTRHLRHWPGLPRGRLWRPGVAWWDVDPEAWREALDHIHWEPVRRGLVGRPEGWRYSSYRRCLAAGLYPAGWSGPQGG
A

Specific function: Unknown

COG id: COG1943

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0217 [H]

Homologues:

Organism=Escherichia coli, GI1786422, Length=143, Percent_Identity=32.1678321678322, Blast_Score=73, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18707; Mature: 18707

Theoretical pI: Translated: 11.67; Mature: 11.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHQEVSPQGRCVRFCLTTHGRHPWLARPEAVQRLRTAFRQVARRRPLVWDAAVVLPDAVH
CCCCCCCCCCEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
GLWRLPPDDPDPRPRWQAAKAHCTRHLRHWPGLPRGRLWRPGVAWWDVDPEAWREALDHI
HHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECCCCEEEECCHHHHHHHHHCC
HWEPVRRGLVGRPEGWRYSSYRRCLAAGLYPAGWSGPQGGA
CHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MHQEVSPQGRCVRFCLTTHGRHPWLARPEAVQRLRTAFRQVARRRPLVWDAAVVLPDAVH
CCCCCCCCCCEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
GLWRLPPDDPDPRPRWQAAKAHCTRHLRHWPGLPRGRLWRPGVAWWDVDPEAWREALDHI
HHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECCCCEEEECCHHHHHHHHHCC
HWEPVRRGLVGRPEGWRYSSYRRCLAAGLYPAGWSGPQGGA
CHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7596361; 9278503 [H]