| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is phbB [H]
Identifier: 121998984
GI number: 121998984
Start: 2420177
End: 2420923
Strand: Reverse
Name: phbB [H]
Synonym: Hhal_2205
Alternate gene names: 121998984
Gene position: 2420923-2420177 (Counterclockwise)
Preceding gene: 121998985
Following gene: 121998980
Centisome position: 90.39
GC content: 64.12
Gene sequence:
>747_bases ATGGCAGGTCGTTTGGCCCTGGTAACCGGAGGCAACGGTGGCATTGGGACCGCTGTCTGTCGCGAACTCGCCGCGCAGGG GTATCGCGTGGTCACTACCTGCGTGGACGCCAAGGCGGAGCGCGTGGACGAGTGGCAGGCGCAGCTGCGCGAGGAGGGCT TCGAGGTCGGCTACGTCGAGTGCAATGTGGCGGACTACGCGTCCTGCCAGCGCATGGCTGAGCAGATGGCGGCGTCGTAC GGTGAGGTCGAGGTGCTGATCAACCTCGCCGGCATCACCCGCGACGCCTTCTGCCACAAGATGGACCACAAGGACTGGCA GGATGTGGTCGACATCAATCTGGACAGCGTGTTCAACGTCACCCGTCAGTTCCTGAACGGCATGCGGGACCGTGGTTTTG GCCGCATCGTCAATGTCTCTTCGGTGAATGGCCAGACCGGGCAGTTCGGTCAGGCCAACTACTCAGCGGCGAAGGCGGGG ATGCACGGCTTCACGATGGCCCTGGCCAAGGAGAACGCGCGCAAGGGTGTGTCGGTGAACACCGTCTCGCCGGGGTATGT GGCGACGAGCATGACGGCGGCGATCCCCGATAATGTGCGTGAGCAGATCGTCTCACAGATCCCGGCCGGCCGTATGGCCG AGCCCGGGGAGATCGCCCGGGTGATCGCTTTCCTGGCGGCGGATGAGTCGGGCTACATTACCGGTGCCAATGTGCCGGTC AACGGTGGCCAGTTCTGCAGCTTCTGA
Upstream 100 bases:
>100_bases AGGCGCAGCAGATGCTGCGATGCACAAAAGTGGTGCGCCGCGGCCGGGGGCCGAGCGCCCACGGGTGCAAGTCGAGTGCA AAAGAGCGAGGAATACCGTT
Downstream 100 bases:
>100_bases GCTGCCCGGGTCCGCCCGTTGCATCGATGCCGGGCGGACCCGTATTTGACAGGTCAATGTGACGGCGCTATCATGTTGCG TAGCAACAATGCCGCAGCCC
Product: acetoacetyl-CoA reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 248; Mature: 247
Protein sequence:
>248_residues MAGRLALVTGGNGGIGTAVCRELAAQGYRVVTTCVDAKAERVDEWQAQLREEGFEVGYVECNVADYASCQRMAEQMAASY GEVEVLINLAGITRDAFCHKMDHKDWQDVVDINLDSVFNVTRQFLNGMRDRGFGRIVNVSSVNGQTGQFGQANYSAAKAG MHGFTMALAKENARKGVSVNTVSPGYVATSMTAAIPDNVREQIVSQIPAGRMAEPGEIARVIAFLAADESGYITGANVPV NGGQFCSF
Sequences:
>Translated_248_residues MAGRLALVTGGNGGIGTAVCRELAAQGYRVVTTCVDAKAERVDEWQAQLREEGFEVGYVECNVADYASCQRMAEQMAASY GEVEVLINLAGITRDAFCHKMDHKDWQDVVDINLDSVFNVTRQFLNGMRDRGFGRIVNVSSVNGQTGQFGQANYSAAKAG MHGFTMALAKENARKGVSVNTVSPGYVATSMTAAIPDNVREQIVSQIPAGRMAEPGEIARVIAFLAADESGYITGANVPV NGGQFCSF >Mature_247_residues AGRLALVTGGNGGIGTAVCRELAAQGYRVVTTCVDAKAERVDEWQAQLREEGFEVGYVECNVADYASCQRMAEQMAASYG EVEVLINLAGITRDAFCHKMDHKDWQDVVDINLDSVFNVTRQFLNGMRDRGFGRIVNVSSVNGQTGQFGQANYSAAKAGM HGFTMALAKENARKGVSVNTVSPGYVATSMTAAIPDNVREQIVSQIPAGRMAEPGEIARVIAFLAADESGYITGANVPVN GGQFCSF
Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI15277342, Length=248, Percent_Identity=38.7096774193548, Blast_Score=162, Evalue=2e-40, Organism=Homo sapiens, GI40254992, Length=236, Percent_Identity=36.4406779661017, Blast_Score=129, Evalue=3e-30, Organism=Homo sapiens, GI32483357, Length=247, Percent_Identity=30.7692307692308, Blast_Score=112, Evalue=2e-25, Organism=Homo sapiens, GI4758504, Length=253, Percent_Identity=29.6442687747036, Blast_Score=104, Evalue=8e-23, Organism=Homo sapiens, GI19923817, Length=256, Percent_Identity=31.25, Blast_Score=101, Evalue=8e-22, Organism=Homo sapiens, GI4504505, Length=211, Percent_Identity=30.3317535545024, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI7705925, Length=247, Percent_Identity=31.1740890688259, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI5031737, Length=249, Percent_Identity=28.1124497991968, Blast_Score=92, Evalue=3e-19, Organism=Homo sapiens, GI66933014, Length=181, Percent_Identity=31.4917127071823, Blast_Score=92, Evalue=6e-19, Organism=Homo sapiens, GI83715985, Length=253, Percent_Identity=28.0632411067194, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI126723750, Length=249, Percent_Identity=26.1044176706827, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI31542939, Length=243, Percent_Identity=29.2181069958848, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI59889578, Length=194, Percent_Identity=27.8350515463918, Blast_Score=81, Evalue=7e-16, Organism=Homo sapiens, GI33667109, Length=196, Percent_Identity=29.0816326530612, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI109715829, Length=234, Percent_Identity=26.0683760683761, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI226371731, Length=215, Percent_Identity=29.7674418604651, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI7705855, Length=195, Percent_Identity=30.7692307692308, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI150247226, Length=195, Percent_Identity=30.7692307692308, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI19743808, Length=195, Percent_Identity=30.7692307692308, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI10190704, Length=252, Percent_Identity=26.5873015873016, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI4503301, Length=201, Percent_Identity=23.8805970149254, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI126723191, Length=182, Percent_Identity=29.1208791208791, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI4557649, Length=200, Percent_Identity=28.5, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI4503817, Length=229, Percent_Identity=27.0742358078603, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI7657478, Length=192, Percent_Identity=29.1666666666667, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI224922801, Length=172, Percent_Identity=31.3953488372093, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI40807363, Length=197, Percent_Identity=28.9340101522843, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=42.0408163265306, Blast_Score=205, Evalue=3e-54, Organism=Escherichia coli, GI87082100, Length=253, Percent_Identity=33.596837944664, Blast_Score=134, Evalue=6e-33, Organism=Escherichia coli, GI87082160, Length=245, Percent_Identity=28.1632653061224, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=28.9156626506024, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=27.710843373494, Blast_Score=114, Evalue=7e-27, Organism=Escherichia coli, GI1786812, Length=253, Percent_Identity=30.4347826086957, Blast_Score=109, Evalue=1e-25, Organism=Escherichia coli, GI1788459, Length=241, Percent_Identity=27.3858921161826, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1789057, Length=256, Percent_Identity=28.125, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI2367175, Length=246, Percent_Identity=28.4552845528455, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787820, Length=184, Percent_Identity=28.804347826087, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1789378, Length=249, Percent_Identity=26.5060240963855, Blast_Score=81, Evalue=5e-17, Organism=Escherichia coli, GI1787905, Length=246, Percent_Identity=24.390243902439, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI2367365, Length=247, Percent_Identity=27.1255060728745, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI1787526, Length=249, Percent_Identity=25.3012048192771, Blast_Score=69, Evalue=2e-13, Organism=Caenorhabditis elegans, GI25147288, Length=245, Percent_Identity=40.4081632653061, Blast_Score=178, Evalue=3e-45, Organism=Caenorhabditis elegans, GI17555706, Length=244, Percent_Identity=40.5737704918033, Blast_Score=177, Evalue=3e-45, Organism=Caenorhabditis elegans, GI17560676, Length=246, Percent_Identity=29.6747967479675, Blast_Score=119, Evalue=1e-27, Organism=Caenorhabditis elegans, GI17568967, Length=244, Percent_Identity=28.2786885245902, Blast_Score=104, Evalue=5e-23, Organism=Caenorhabditis elegans, GI17561402, Length=249, Percent_Identity=28.1124497991968, Blast_Score=100, Evalue=6e-22, Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=32.4427480916031, Blast_Score=98, Evalue=5e-21, Organism=Caenorhabditis elegans, GI17538182, Length=260, Percent_Identity=28.4615384615385, Blast_Score=97, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=30.3846153846154, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17562908, Length=260, Percent_Identity=30.7692307692308, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17560220, Length=260, Percent_Identity=30, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=30.3846153846154, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17560332, Length=262, Percent_Identity=30.9160305343511, Blast_Score=91, Evalue=7e-19, Organism=Caenorhabditis elegans, GI17560150, Length=259, Percent_Identity=30.1158301158301, Blast_Score=90, Evalue=8e-19, Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=30.5343511450382, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=31.1787072243346, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI72000259, Length=257, Percent_Identity=29.5719844357977, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17565030, Length=262, Percent_Identity=33.206106870229, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17562910, Length=258, Percent_Identity=30.2325581395349, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17563726, Length=265, Percent_Identity=29.4339622641509, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17508895, Length=191, Percent_Identity=29.8429319371728, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17544670, Length=269, Percent_Identity=28.2527881040892, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI71994604, Length=249, Percent_Identity=28.5140562248996, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI193203117, Length=243, Percent_Identity=26.7489711934156, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI193203115, Length=241, Percent_Identity=26.9709543568465, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17538486, Length=259, Percent_Identity=27.7992277992278, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17562904, Length=260, Percent_Identity=29.2307692307692, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=28.030303030303, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI71994600, Length=250, Percent_Identity=26.4, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17536651, Length=253, Percent_Identity=24.901185770751, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17564282, Length=192, Percent_Identity=26.0416666666667, Blast_Score=77, Evalue=6e-15, Organism=Caenorhabditis elegans, GI115534694, Length=242, Percent_Identity=26.0330578512397, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17551412, Length=259, Percent_Identity=28.1853281853282, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17508651, Length=252, Percent_Identity=26.1904761904762, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17536025, Length=256, Percent_Identity=24.609375, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17558006, Length=216, Percent_Identity=30.0925925925926, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193207185, Length=145, Percent_Identity=33.1034482758621, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17567345, Length=201, Percent_Identity=23.3830845771144, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17561272, Length=195, Percent_Identity=24.6153846153846, Blast_Score=64, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=211, Percent_Identity=31.7535545023697, Blast_Score=109, Evalue=5e-25, Organism=Saccharomyces cerevisiae, GI6320089, Length=244, Percent_Identity=23.3606557377049, Blast_Score=74, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6323882, Length=196, Percent_Identity=24.4897959183673, Blast_Score=68, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6324126, Length=249, Percent_Identity=23.2931726907631, Blast_Score=66, Evalue=7e-12, Organism=Drosophila melanogaster, GI24639444, Length=247, Percent_Identity=40.080971659919, Blast_Score=175, Evalue=2e-44, Organism=Drosophila melanogaster, GI21355319, Length=247, Percent_Identity=31.5789473684211, Blast_Score=126, Evalue=2e-29, Organism=Drosophila melanogaster, GI17737361, Length=231, Percent_Identity=32.034632034632, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI24644339, Length=254, Percent_Identity=31.1023622047244, Blast_Score=104, Evalue=5e-23, Organism=Drosophila melanogaster, GI18859837, Length=248, Percent_Identity=31.8548387096774, Blast_Score=103, Evalue=8e-23, Organism=Drosophila melanogaster, GI23397609, Length=250, Percent_Identity=29.2, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI24643142, Length=252, Percent_Identity=29.3650793650794, Blast_Score=101, Evalue=5e-22, Organism=Drosophila melanogaster, GI21357041, Length=249, Percent_Identity=30.5220883534137, Blast_Score=95, Evalue=5e-20, Organism=Drosophila melanogaster, GI28571526, Length=248, Percent_Identity=29.0322580645161, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI24665243, Length=207, Percent_Identity=32.8502415458937, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI221331218, Length=207, Percent_Identity=32.8502415458937, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI24665247, Length=209, Percent_Identity=33.4928229665072, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI221331216, Length=209, Percent_Identity=33.4928229665072, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI24649181, Length=256, Percent_Identity=29.296875, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI21358495, Length=194, Percent_Identity=28.3505154639175, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24640442, Length=198, Percent_Identity=30.3030303030303, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24644337, Length=172, Percent_Identity=32.5581395348837, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24641232, Length=235, Percent_Identity=27.2340425531915, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI21356301, Length=188, Percent_Identity=28.1914893617021, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI21355631, Length=173, Percent_Identity=28.9017341040462, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI24584748, Length=203, Percent_Identity=31.5270935960591, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI161076933, Length=203, Percent_Identity=31.5270935960591, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24640492, Length=197, Percent_Identity=26.9035532994924, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI116007236, Length=202, Percent_Identity=29.2079207920792, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24584752, Length=199, Percent_Identity=28.643216080402, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI24665264, Length=201, Percent_Identity=27.8606965174129, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011283 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.36 [H]
Molecular weight: Translated: 26520; Mature: 26389
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGRLALVTGGNGGIGTAVCRELAAQGYRVVTTCVDAKAERVDEWQAQLREEGFEVGYVE CCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEE CNVADYASCQRMAEQMAASYGEVEVLINLAGITRDAFCHKMDHKDWQDVVDINLDSVFNV ECCHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHCCCCCHHHHHHCCHHHHHHH TRQFLNGMRDRGFGRIVNVSSVNGQTGQFGQANYSAAKAGMHGFTMALAKENARKGVSVN HHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCEEE TVSPGYVATSMTAAIPDNVREQIVSQIPAGRMAEPGEIARVIAFLAADESGYITGANVPV CCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCC NGGQFCSF CCCCCCCC >Mature Secondary Structure AGRLALVTGGNGGIGTAVCRELAAQGYRVVTTCVDAKAERVDEWQAQLREEGFEVGYVE CCEEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEE CNVADYASCQRMAEQMAASYGEVEVLINLAGITRDAFCHKMDHKDWQDVVDINLDSVFNV ECCHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHCCCCCHHHHHHCCHHHHHHH TRQFLNGMRDRGFGRIVNVSSVNGQTGQFGQANYSAAKAGMHGFTMALAKENARKGVSVN HHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCEEE TVSPGYVATSMTAAIPDNVREQIVSQIPAGRMAEPGEIARVIAFLAADESGYITGANVPV CCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCC NGGQFCSF CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1396692 [H]