| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998854
Identifier: 121998854
GI number: 121998854
Start: 2280205
End: 2280783
Strand: Reverse
Name: 121998854
Synonym: Hhal_2075
Alternate gene names: NA
Gene position: 2280783-2280205 (Counterclockwise)
Preceding gene: 121998855
Following gene: 121998852
Centisome position: 85.15
GC content: 70.98
Gene sequence:
>579_bases ATGAGGTGTCTTCGAGCCGCAGTAGCGGCCTGCGTGATGCTGGCGGCAACGGCGGGTGCCAGCAACGCCTCCGAGCCGGA TCAGGTGGAGTACCGGACCGGCCTGGACGTGCTTGAGTTCTTTCTCAGCGCCTCTCAGCCGATGGACAACGAACGCGCCC AGGCGCTGTTCGGCGCCGCCGTGGCCTCGAATATGCGGGTGCCACCGGAGCACCTCGGTGTCGCCTTCCACGACCGTCGC ACCGGCGGTGCCCTCGATCCCCAGGAGGTGCGGGAGTTGATCGGCCCCGTCCGCCAGGACGGCGCGCGGCAGCTGATCCA CAGTGTCTCGGCCCTGTTCGCCGGCTACATGCCCATGGCGCCGGACCAGCTGGAGTTGCTGCTCGACGCCGCCTTCGTAG CCAGCCTGCGCCGGCCGCCGCCCCATATCGACGTCGAGTTCTATGATCGGCGCCACGGCCCGACGGGCCTCGGCGGGGGC GTCTCCGGCCGCGTTCCGGACGATGGAGCGGGGGCCACCGAGCCGGGGCCAGGAGGGGGTCCAGGGGTCGGTGGCGGGCT GGTCCCAGGATTGCGCTAG
Upstream 100 bases:
>100_bases CAGCGCACGCCCCCGGGCGTCGCTGGCGGTTTGCGTTGGGATCTCGTACTCTGACTGAGTCAGTGGCCAGCGGCCGCCCG GTCGTACGGAGGGGTTCCCG
Downstream 100 bases:
>100_bases CCGTTGACCTCGTAGACGTCGAAGCGTACGGCCCGACCGGCGACCGACCGGCTCGGCGGCGGGCCGGCCACCGGGGCCGC GCGCTGTGGCCGCTTGACCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 192; Mature: 192
Protein sequence:
>192_residues MRCLRAAVAACVMLAATAGASNASEPDQVEYRTGLDVLEFFLSASQPMDNERAQALFGAAVASNMRVPPEHLGVAFHDRR TGGALDPQEVRELIGPVRQDGARQLIHSVSALFAGYMPMAPDQLELLLDAAFVASLRRPPPHIDVEFYDRRHGPTGLGGG VSGRVPDDGAGATEPGPGGGPGVGGGLVPGLR
Sequences:
>Translated_192_residues MRCLRAAVAACVMLAATAGASNASEPDQVEYRTGLDVLEFFLSASQPMDNERAQALFGAAVASNMRVPPEHLGVAFHDRR TGGALDPQEVRELIGPVRQDGARQLIHSVSALFAGYMPMAPDQLELLLDAAFVASLRRPPPHIDVEFYDRRHGPTGLGGG VSGRVPDDGAGATEPGPGGGPGVGGGLVPGLR >Mature_192_residues MRCLRAAVAACVMLAATAGASNASEPDQVEYRTGLDVLEFFLSASQPMDNERAQALFGAAVASNMRVPPEHLGVAFHDRR TGGALDPQEVRELIGPVRQDGARQLIHSVSALFAGYMPMAPDQLELLLDAAFVASLRRPPPHIDVEFYDRRHGPTGLGGG VSGRVPDDGAGATEPGPGGGPGVGGGLVPGLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19975; Mature: 19975
Theoretical pI: Translated: 5.23; Mature: 5.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRCLRAAVAACVMLAATAGASNASEPDQVEYRTGLDVLEFFLSASQPMDNERAQALFGAA CHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH VASNMRVPPEHLGVAFHDRRTGGALDPQEVRELIGPVRQDGARQLIHSVSALFAGYMPMA HHCCCCCCHHHHCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC PDQLELLLDAAFVASLRRPPPHIDVEFYDRRHGPTGLGGGVSGRVPDDGAGATEPGPGGG HHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PGVGGGLVPGLR CCCCCCCCCCCC >Mature Secondary Structure MRCLRAAVAACVMLAATAGASNASEPDQVEYRTGLDVLEFFLSASQPMDNERAQALFGAA CHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH VASNMRVPPEHLGVAFHDRRTGGALDPQEVRELIGPVRQDGARQLIHSVSALFAGYMPMA HHCCCCCCHHHHCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC PDQLELLLDAAFVASLRRPPPHIDVEFYDRRHGPTGLGGGVSGRVPDDGAGATEPGPGGG HHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PGVGGGLVPGLR CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA