| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998722
Identifier: 121998722
GI number: 121998722
Start: 2141088
End: 2141594
Strand: Reverse
Name: 121998722
Synonym: Hhal_1943
Alternate gene names: NA
Gene position: 2141594-2141088 (Counterclockwise)
Preceding gene: 121998723
Following gene: 121998717
Centisome position: 79.96
GC content: 64.89
Gene sequence:
>507_bases ATGACAGCACGGAAGGGGGAGCGAGGCCGGCTTGGTGGTGTGGCCGCTGGCCTGCTGGCACTCAGTGGCGCGCTGGCCAG CGCAGCGGCGGAGGATTTCCCGGAGCCTCAACTGGTGTTCCACATCGATATGCAGGAGCCGCAGCGCGTCAGCTCCACCA TCTTCAACGCCAATAACGCTGCGAGCCACTACGAAGGGCAGTTGCTCGATCACGATGTGCGGATCGTCCTGCACGGGTTC GGTCTGCGGTATGTGACCGAGGACCGGCTGGCGGACACCGCCTACGAGGTGGATGAGGCCGACGTGGCCGAGCGTGACGA TCTACTCCAGCGGCTGCGCACGCTCTCCGATACCTACGACGTGCAGCTGGAGGTCTGTGCCAGCTCCATGGACGAGGCGG GGCTGGAGCAGGAGGATCTGGCGGTGGATGCGGAGCTGATCGACTACGGGGCCACCCGCCTCGAAGAGCTCCAGCGCCGC GGCTTCTCGTATATCAAGATCCAGTAG
Upstream 100 bases:
>100_bases CCCGGGGGCGAGCTCTCCTTCCGGCTGACGCCGGAGGATCTGGCCGATCTGCTGGAGCAGGAGGCGCACTAGGGCGGTTC GGGCCGCAGGAGGGATGACC
Downstream 100 bases:
>100_bases CGCCCTTCCGCGGGGCCGACACGACGAGGGCGCCGGGCAAGCCGGTGCCCTCGTCGTGTCGGGTACGGCGGTCGGCTTTC AGCTCAGTTCCATCTCGTGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 168; Mature: 167
Protein sequence:
>168_residues MTARKGERGRLGGVAAGLLALSGALASAAAEDFPEPQLVFHIDMQEPQRVSSTIFNANNAASHYEGQLLDHDVRIVLHGF GLRYVTEDRLADTAYEVDEADVAERDDLLQRLRTLSDTYDVQLEVCASSMDEAGLEQEDLAVDAELIDYGATRLEELQRR GFSYIKIQ
Sequences:
>Translated_168_residues MTARKGERGRLGGVAAGLLALSGALASAAAEDFPEPQLVFHIDMQEPQRVSSTIFNANNAASHYEGQLLDHDVRIVLHGF GLRYVTEDRLADTAYEVDEADVAERDDLLQRLRTLSDTYDVQLEVCASSMDEAGLEQEDLAVDAELIDYGATRLEELQRR GFSYIKIQ >Mature_167_residues TARKGERGRLGGVAAGLLALSGALASAAAEDFPEPQLVFHIDMQEPQRVSSTIFNANNAASHYEGQLLDHDVRIVLHGFG LRYVTEDRLADTAYEVDEADVAERDDLLQRLRTLSDTYDVQLEVCASSMDEAGLEQEDLAVDAELIDYGATRLEELQRRG FSYIKIQ
Specific function: Unknown
COG id: COG1416
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18574; Mature: 18443
Theoretical pI: Translated: 4.18; Mature: 4.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTARKGERGRLGGVAAGLLALSGALASAAAEDFPEPQLVFHIDMQEPQRVSSTIFNANNA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCC ASHYEGQLLDHDVRIVLHGFGLRYVTEDRLADTAYEVDEADVAERDDLLQRLRTLSDTYD CCCCCCCCCCCCEEEEEEECCCEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHH VQLEVCASSMDEAGLEQEDLAVDAELIDYGATRLEELQRRGFSYIKIQ HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC >Mature Secondary Structure TARKGERGRLGGVAAGLLALSGALASAAAEDFPEPQLVFHIDMQEPQRVSSTIFNANNA CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCC ASHYEGQLLDHDVRIVLHGFGLRYVTEDRLADTAYEVDEADVAERDDLLQRLRTLSDTYD CCCCCCCCCCCCEEEEEEECCCEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHH VQLEVCASSMDEAGLEQEDLAVDAELIDYGATRLEELQRRGFSYIKIQ HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA