Definition Halorhodospira halophila SL1 chromosome, complete genome.
Accession NC_008789
Length 2,678,452

Click here to switch to the map view.

The map label for this gene is 121998602

Identifier: 121998602

GI number: 121998602

Start: 1996237

End: 1996668

Strand: Reverse

Name: 121998602

Synonym: Hhal_1823

Alternate gene names: NA

Gene position: 1996668-1996237 (Counterclockwise)

Preceding gene: 121998603

Following gene: 121998601

Centisome position: 74.55

GC content: 72.22

Gene sequence:

>432_bases
TTGACGGTGGCCTCCCGGCAGGCCGGCTTTGCTGTACTCGGTCTGAGTGCGGTGGTGGTCATGCTGGCGCTGTTGTCGTG
GTCGGTGGTTGCACCCACCGCCCTGCAGCTACGTGCGGCTGCGGCCCTGGAGTCCCGGGCTGCGGCCCGCCTGGCGGCCG
GCGACGAGCTGGCCGCGGCGATGCGCGACCTTGCATCCGGCCGCCAGGGCGCCGGCGACCCCGGGTGCTGCAGCGGCGAG
GCAGCGGCGCCATGCTACGCTATCGAGCGCAATCACGGTCAGTTCCGGGTTTGCGCCCGTGGCCTTGGGGGCGACCGGAC
CGAGGTCTGCCTGCAGGCGGGCGTTGTGCTCGAGCCGGCGCAGGCATCGGGGGCGGCTGACCGCGTCGAGATCCGCTGGC
AGCGCGAATGCCCCCACGGAAATCTGGATTGA

Upstream 100 bases:

>100_bases
CTGTGCGCTTCACTGCACGCATCCGTGCCGGTGGCGAGCGCGGCGCCACCAAAGCGGACCAGATCCAGACGGTCACAGTG
CCGATCCACGGGAGGCTGCC

Downstream 100 bases:

>100_bases
GGACGGTCTTATGAAGAGAGTGGGTCAGCGCGTCCGTGTGGCTGGCTTCAGCCTGGTCGAGCTGATGATCGTACTGGCTA
TCCTGGCCATCCTGGTGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MTVASRQAGFAVLGLSAVVVMLALLSWSVVAPTALQLRAAAALESRAAARLAAGDELAAAMRDLASGRQGAGDPGCCSGE
AAAPCYAIERNHGQFRVCARGLGGDRTEVCLQAGVVLEPAQASGAADRVEIRWQRECPHGNLD

Sequences:

>Translated_143_residues
MTVASRQAGFAVLGLSAVVVMLALLSWSVVAPTALQLRAAAALESRAAARLAAGDELAAAMRDLASGRQGAGDPGCCSGE
AAAPCYAIERNHGQFRVCARGLGGDRTEVCLQAGVVLEPAQASGAADRVEIRWQRECPHGNLD
>Mature_142_residues
TVASRQAGFAVLGLSAVVVMLALLSWSVVAPTALQLRAAAALESRAAARLAAGDELAAAMRDLASGRQGAGDPGCCSGEA
AAPCYAIERNHGQFRVCARGLGGDRTEVCLQAGVVLEPAQASGAADRVEIRWQRECPHGNLD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14672; Mature: 14541

Theoretical pI: Translated: 6.48; Mature: 6.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
4.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVASRQAGFAVLGLSAVVVMLALLSWSVVAPTALQLRAAAALESRAAARLAAGDELAAA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHH
MRDLASGRQGAGDPGCCSGEAAAPCYAIERNHGQFRVCARGLGGDRTEVCLQAGVVLEPA
HHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCHHHHHHHCCCEECCC
QASGAADRVEIRWQRECPHGNLD
CCCCCCCEEEEEEECCCCCCCCC
>Mature Secondary Structure 
TVASRQAGFAVLGLSAVVVMLALLSWSVVAPTALQLRAAAALESRAAARLAAGDELAAA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHH
MRDLASGRQGAGDPGCCSGEAAAPCYAIERNHGQFRVCARGLGGDRTEVCLQAGVVLEPA
HHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCHHHHHHHCCCEECCC
QASGAADRVEIRWQRECPHGNLD
CCCCCCCEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA