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The map label for this gene is ppdD [C]

Identifier: 121998601

GI number: 121998601

Start: 1995810

End: 1996226

Strand: Reverse

Name: ppdD [C]

Synonym: Hhal_1822

Alternate gene names: 121998601

Gene position: 1996226-1995810 (Counterclockwise)

Preceding gene: 121998602

Following gene: 121998600

Centisome position: 74.53

GC content: 64.51

Gene sequence:

>417_bases
ATGAAGAGAGTGGGTCAGCGCGTCCGTGTGGCTGGCTTCAGCCTGGTCGAGCTGATGATCGTACTGGCTATCCTGGCCAT
CCTGGTGGCGATCGCCTACCCGTTCTACGGCCAGTACAAGGTGCAGGCGGATCGCAGCGATGCCACCGCCACTCTGCTGG
ATACTTGGATGGCGCTCGAGCGCTGTTTCATCCAGGAGATGAGCTACCAGGCGTGCACAGATGAGGTCCCGGAGTTGTCC
GAGCGGGGCCTCTATGAACTCGAGATCGAGACCGACGCCGATGGCTTTCGCCTGACCGCCACACCGGCGCCGGGAAGTCC
GCAGGAGGCGGATGAGGCGTGTACGGAATTCACCCTCGATCACCGCGGCGAACGGGGCAGTGCCCCCGGGGCCGCGGAGG
TCTGCTGGGGCGACTGA

Upstream 100 bases:

>100_bases
GTTGTGCTCGAGCCGGCGCAGGCATCGGGGGCGGCTGACCGCGTCGAGATCCGCTGGCAGCGCGAATGCCCCCACGGAAA
TCTGGATTGAGGACGGTCTT

Downstream 100 bases:

>100_bases
CCCCGGGATTCACGCTGACCGAGCTGCTGGTGGCGCTCGCCCTGATTGCCGGGCTGACCGCTGTGGCGGCGCCACAGTTG
GGTGCCGGTGTGGATGAGGT

Product: type IV pilin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MKRVGQRVRVAGFSLVELMIVLAILAILVAIAYPFYGQYKVQADRSDATATLLDTWMALERCFIQEMSYQACTDEVPELS
ERGLYELEIETDADGFRLTATPAPGSPQEADEACTEFTLDHRGERGSAPGAAEVCWGD

Sequences:

>Translated_138_residues
MKRVGQRVRVAGFSLVELMIVLAILAILVAIAYPFYGQYKVQADRSDATATLLDTWMALERCFIQEMSYQACTDEVPELS
ERGLYELEIETDADGFRLTATPAPGSPQEADEACTEFTLDHRGERGSAPGAAEVCWGD
>Mature_138_residues
MKRVGQRVRVAGFSLVELMIVLAILAILVAIAYPFYGQYKVQADRSDATATLLDTWMALERCFIQEMSYQACTDEVPELS
ERGLYELEIETDADGFRLTATPAPGSPQEADEACTEFTLDHRGERGSAPGAAEVCWGD

Specific function: Not Yet Known. [C]

COG id: COG4968

COG function: function code NU; Tfp pilus assembly protein PilE

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15198; Mature: 15198

Theoretical pI: Translated: 4.08; Mature: 4.08

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRVGQRVRVAGFSLVELMIVLAILAILVAIAYPFYGQYKVQADRSDATATLLDTWMALE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH
RCFIQEMSYQACTDEVPELSERGLYELEIETDADGFRLTATPAPGSPQEADEACTEFTLD
HHHHHHHHHHHHHCCHHHHHHCCCEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHH
HRGERGSAPGAAEVCWGD
CCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKRVGQRVRVAGFSLVELMIVLAILAILVAIAYPFYGQYKVQADRSDATATLLDTWMALE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH
RCFIQEMSYQACTDEVPELSERGLYELEIETDADGFRLTATPAPGSPQEADEACTEFTLD
HHHHHHHHHHHHHCCHHHHHHCCCEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHH
HRGERGSAPGAAEVCWGD
CCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA