| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998514
Identifier: 121998514
GI number: 121998514
Start: 1900414
End: 1902072
Strand: Reverse
Name: 121998514
Synonym: Hhal_1735
Alternate gene names: NA
Gene position: 1902072-1900414 (Counterclockwise)
Preceding gene: 121998515
Following gene: 121998510
Centisome position: 71.01
GC content: 73.42
Gene sequence:
>1659_bases ATGCGCTGGGCGGGAGCAAGTGCCGAGGCGCCGACGCGTGCGCCGAGCGCCGCCGGCGACACCGGCCTGGACGCCCTGCA GACGCTCCAGACGCTCGGTGTCGGCCGTCTGTCGCCGGCGCTGATCGAGGAGATGGCGCAGCTCCAGCGCCGTGCCCGTG AACGCCTGGCCCAGTCGCGGGAGCACGTCGTTATCGCCGTGGCCGGAGGGACCGGTAGCGGCAAATCTTCGCTGGTCAAT GCCCTGGTCGGCGAAGAGGTCTCCGCCCCCGGGGTGCGCCGGCCGACCACGGACCATGCGGTGGCGGTCACCGTGGGCGA GGAGGACGGGGCCGCCGGGCTGCTCGACTGGCTGCAGGTCTTCGAACGGCGCAGCGTACCGGCCAGCGGTGGGCGCGGTG GTCTGGCCGGGGCGGTGATCCTGGATCTGCCCGATATCGACTCGGTGGTGCAGGCCCACTGGGAGGTGGCCGAGCGACTG ATCGAGCGCTGCGATCTGCTGCTGTGGGTCGTCGATCCGGTCAAGTACGCCCACGCCCTGGCCCATGAGGGGTATTTTGC CCGCCTGGCCCACCACACCGAGGTGTTGATGGTGGCGCTGAACCACGCCGATCGCCTGGATCCAGGCGACCGAGAGAGCT GTCTCGACCACCTTCGGGAGTTGCTGGGCCGGCAGGGGCTGCAGGCGGTGGAGTTGCTGGCCACCGACGCGGTCGAAGGG GAGGGGGTCTCTGCACTCGCCCAGCGGATCGCGGACCGGGTGCGCGAGCGCCGCGCCCCGCTGGAGCGGGTCCGTGCTGA CGTGGCCGAACTGGTGGTCCGCGCCGCCGCCTGCCTTCCCGAACCCGGCAGCCTGGAGCTTGACGGTGAGCGCCTGGTGA CCGCCCAGCGCCAGGCGGTGAACGAGACCGAGCTGCTGACCGGTGCTGCGGGGGCCTATCGCCAGATTGGTGCGCGGGCT CTGGGCTCGCCGTTGAAACGGATGGCCATCGGGCTGTTCTCCGGGGCGCGCAAGCGCTCTGCCGCTATGGCCGGTACCAG CTCGACCCTGCCGCGCCCGGTGGTGGCGGAGCCCGTGTTGCGTGATGGCCTGCTGCAGGCGGTCGAACCGGCTGCGGCGC GGATGCCCGAGCCGGCTGCCGAGCGGTTGCGGGACCTGGCGGCGGCAGCGGCGGCGCCGCACGCCGGCGAACTCCGCGGG CGTCTAGGGGAACTGGCCTGGTCGCCGCGTCCGCGCTTTTGGTGGCGGAGCCTGGGTACGCTCCGCGGGGCGGGCGAGGC GGCCGCGGTGATCGGGGCGCTCTGGCTGGCTGTGCGCGGAGTGGTGGAGTGGCTGGCCCTGCCGGCTGTGCCCGCACCGG CAGCGGTGGGCGACATCAGCTGGCCTTTCGCCCTGCTCGCAGGAGGGAGTATCGGCAGTCTGCTGCTGGGTTGGGTGGGG CGCTCCCTGCTCGGGCCGGGGGCCCGGCGCCACGAGCGCCAGCTGGCGCGGCAGGTCATCGAGGCGGTTGCCGGGGCGGG CGGTACTGCACTGGCCGGTGTGCGCGAGGAGCTGGCGCAGTGCCAGCGCCTGAGCAGCCGGGCCCGAAGCGCCGCCACGG AGGTGGCGGCGGCGGGGCTACGGCAAGAAGGGGGTGCGGGTCAGTCGAGGAGCGGGTAG
Upstream 100 bases:
>100_bases AGGCGCAGGCCTACCACCGGTTATTGACGGCGGCGGCCCCGTCCCCGGAGGCGGTGAGCGCCGTGCAGGCTCGTCGGGAT GCGCTGGAGGCCCTGGTCTG
Downstream 100 bases:
>100_bases GTGCCGTTCTCGTCGTGGACTTCCCGGCCGGTCAGCGGCGGATTGAAGACGCACATCAGGCGCAATTCTTCCTCGGCACG CAGGTAGTGCTTCTCGTGGC
Product: putative ABC transporter
Products: NA
Alternate protein names: GTPase; AAA ATPase; LOW QUALITY PROTEIN ABC Transporter
Number of amino acids: Translated: 552; Mature: 552
Protein sequence:
>552_residues MRWAGASAEAPTRAPSAAGDTGLDALQTLQTLGVGRLSPALIEEMAQLQRRARERLAQSREHVVIAVAGGTGSGKSSLVN ALVGEEVSAPGVRRPTTDHAVAVTVGEEDGAAGLLDWLQVFERRSVPASGGRGGLAGAVILDLPDIDSVVQAHWEVAERL IERCDLLLWVVDPVKYAHALAHEGYFARLAHHTEVLMVALNHADRLDPGDRESCLDHLRELLGRQGLQAVELLATDAVEG EGVSALAQRIADRVRERRAPLERVRADVAELVVRAAACLPEPGSLELDGERLVTAQRQAVNETELLTGAAGAYRQIGARA LGSPLKRMAIGLFSGARKRSAAMAGTSSTLPRPVVAEPVLRDGLLQAVEPAAARMPEPAAERLRDLAAAAAAPHAGELRG RLGELAWSPRPRFWWRSLGTLRGAGEAAAVIGALWLAVRGVVEWLALPAVPAPAAVGDISWPFALLAGGSIGSLLLGWVG RSLLGPGARRHERQLARQVIEAVAGAGGTALAGVREELAQCQRLSSRARSAATEVAAAGLRQEGGAGQSRSG
Sequences:
>Translated_552_residues MRWAGASAEAPTRAPSAAGDTGLDALQTLQTLGVGRLSPALIEEMAQLQRRARERLAQSREHVVIAVAGGTGSGKSSLVN ALVGEEVSAPGVRRPTTDHAVAVTVGEEDGAAGLLDWLQVFERRSVPASGGRGGLAGAVILDLPDIDSVVQAHWEVAERL IERCDLLLWVVDPVKYAHALAHEGYFARLAHHTEVLMVALNHADRLDPGDRESCLDHLRELLGRQGLQAVELLATDAVEG EGVSALAQRIADRVRERRAPLERVRADVAELVVRAAACLPEPGSLELDGERLVTAQRQAVNETELLTGAAGAYRQIGARA LGSPLKRMAIGLFSGARKRSAAMAGTSSTLPRPVVAEPVLRDGLLQAVEPAAARMPEPAAERLRDLAAAAAAPHAGELRG RLGELAWSPRPRFWWRSLGTLRGAGEAAAVIGALWLAVRGVVEWLALPAVPAPAAVGDISWPFALLAGGSIGSLLLGWVG RSLLGPGARRHERQLARQVIEAVAGAGGTALAGVREELAQCQRLSSRARSAATEVAAAGLRQEGGAGQSRSG >Mature_552_residues MRWAGASAEAPTRAPSAAGDTGLDALQTLQTLGVGRLSPALIEEMAQLQRRARERLAQSREHVVIAVAGGTGSGKSSLVN ALVGEEVSAPGVRRPTTDHAVAVTVGEEDGAAGLLDWLQVFERRSVPASGGRGGLAGAVILDLPDIDSVVQAHWEVAERL IERCDLLLWVVDPVKYAHALAHEGYFARLAHHTEVLMVALNHADRLDPGDRESCLDHLRELLGRQGLQAVELLATDAVEG EGVSALAQRIADRVRERRAPLERVRADVAELVVRAAACLPEPGSLELDGERLVTAQRQAVNETELLTGAAGAYRQIGARA LGSPLKRMAIGLFSGARKRSAAMAGTSSTLPRPVVAEPVLRDGLLQAVEPAAARMPEPAAERLRDLAAAAAAPHAGELRG RLGELAWSPRPRFWWRSLGTLRGAGEAAAVIGALWLAVRGVVEWLALPAVPAPAAVGDISWPFALLAGGSIGSLLLGWVG RSLLGPGARRHERQLARQVIEAVAGAGGTALAGVREELAQCQRLSSRARSAATEVAAAGLRQEGGAGQSRSG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57883; Mature: 57883
Theoretical pI: Translated: 7.37; Mature: 7.37
Prosite motif: PS00227 TUBULIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRWAGASAEAPTRAPSAAGDTGLDALQTLQTLGVGRLSPALIEEMAQLQRRARERLAQSR CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC EHVVIAVAGGTGSGKSSLVNALVGEEVSAPGVRRPTTDHAVAVTVGEEDGAAGLLDWLQV CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHH FERRSVPASGGRGGLAGAVILDLPDIDSVVQAHWEVAERLIERCDLLLWVVDPVKYAHAL HHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AHEGYFARLAHHTEVLMVALNHADRLDPGDRESCLDHLRELLGRQGLQAVELLATDAVEG HHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC EGVSALAQRIADRVRERRAPLERVRADVAELVVRAAACLPEPGSLELDGERLVTAQRQAV CCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHC NETELLTGAAGAYRQIGARALGSPLKRMAIGLFSGARKRSAAMAGTSSTLPRPVVAEPVL CHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH RDGLLQAVEPAAARMPEPAAERLRDLAAAAAAPHAGELRGRLGELAWSPRPRFWWRSLGT HHHHHHHHCHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH LRGAGEAAAVIGALWLAVRGVVEWLALPAVPAPAAVGDISWPFALLAGGSIGSLLLGWVG HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHH RSLLGPGARRHERQLARQVIEAVAGAGGTALAGVREELAQCQRLSSRARSAATEVAAAGL HHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RQEGGAGQSRSG HHCCCCCCCCCC >Mature Secondary Structure MRWAGASAEAPTRAPSAAGDTGLDALQTLQTLGVGRLSPALIEEMAQLQRRARERLAQSR CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC EHVVIAVAGGTGSGKSSLVNALVGEEVSAPGVRRPTTDHAVAVTVGEEDGAAGLLDWLQV CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHH FERRSVPASGGRGGLAGAVILDLPDIDSVVQAHWEVAERLIERCDLLLWVVDPVKYAHAL HHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AHEGYFARLAHHTEVLMVALNHADRLDPGDRESCLDHLRELLGRQGLQAVELLATDAVEG HHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC EGVSALAQRIADRVRERRAPLERVRADVAELVVRAAACLPEPGSLELDGERLVTAQRQAV CCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHC NETELLTGAAGAYRQIGARALGSPLKRMAIGLFSGARKRSAAMAGTSSTLPRPVVAEPVL CHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH RDGLLQAVEPAAARMPEPAAERLRDLAAAAAAPHAGELRGRLGELAWSPRPRFWWRSLGT HHHHHHHHCHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH LRGAGEAAAVIGALWLAVRGVVEWLALPAVPAPAAVGDISWPFALLAGGSIGSLLLGWVG HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHH RSLLGPGARRHERQLARQVIEAVAGAGGTALAGVREELAQCQRLSSRARSAATEVAAAGL HHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RQEGGAGQSRSG HHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA