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The map label for this gene is yciR [C]

Identifier: 121998484

GI number: 121998484

Start: 1859981

End: 1862041

Strand: Reverse

Name: yciR [C]

Synonym: Hhal_1705

Alternate gene names: 121998484

Gene position: 1862041-1859981 (Counterclockwise)

Preceding gene: 121998485

Following gene: 121998483

Centisome position: 69.52

GC content: 67.49

Gene sequence:

>2061_bases
ATGCCGCGCGGTGCCCCCTGGGTCGATTCCGCGACGGCAGCCCAGCGCCTGGGCGCCGCCGGGCCGCTCAACGGCAAGGC
AGCGGTGGATCTGATGGAGCACGATAACGCGGAGCAGGGAGCGAAGGGCTGGCCGATCCCCATCGAAGCGATTGCCGATG
CAGCCTTCGTTCACGATCGCGATTACCGCATCATCGGGGCCAACACGGCCTACCTCGAGCGGGCCCGTTGCCGGGCCAAT
CAAGCCCTGGGGCACTACTACTGGGAGGTCTTCCCGATACGGGAGGGGCCGCTGCCCGGATGCGAGGCGAGCATGCAGGC
CCAGGCCGCTGGATTCGCGGAGGGCGATGTTCCGCAGCAGGCGCGCTGTGATCGGATTGTGGATGGCAGCGACATTCTGC
AGTCGCGGGCCTATCCGGTGGTGGATGAGGCGGGTCGTTACTCCTGTTCCTTGCACATCCTCGAAGACGTCACCGAGCGG
GAAGAGGTCCGCAAAGCGCTGCGCGAGCGCGACTGGCAGTACCACCAGCTGCTGGCCAAGACGGCCGAAGGGATCGTCAT
CGTTGACGGTGACGGCCGTATCCTCTATGCGAACGCCGCGGCCGGGACGTTTCTTGGGCAGGAGCCGCAAGAGCTGGTCG
GTGCTTGGTTCGGTCAGGCCATCCCCCGTGAAGTACCGCAGCAGGTTGAGCTGTTTGCCCCCGGCATCGGGGTGCGTACC
GTGGAGATGGGCGCCCAGCCCATCGACTGGGAAGGCTTGAATGCCTGGGTGATCAACCTCCACGACGTCACCAACCGCGA
GTCGCTCCGGCTGCTCTTCCAGGATCGCCTGGCCCGCACGCTGGACGCCTTGCCGCCGTGGGCGCCGGTGGCGCTGGTGG
TCATCGATGTGAATGACTTCCGCACCATCAACGACAGCTTCGGCCACGTAGCCGGTGATGCCGTGCTCAAGCAGCTGGGG
CAGCGGCTGAGTCACGTCCGTGTGCCCGCCGAACTCAGCGCTGCGGCCCAGGTTTCGCGGCTCGGCGGCGACGAGTTCGC
CGTGGTGCTGCCTCGCCTGCGGAGCCTCGGCGACGCCGCAGAGGTGGCAAGACGATTCCTCGAGGTAACCGAGGCCCCCT
TTCGGGTCCAGGGGCATGAGGTGCGCATCCATTTGCGCGTCGGTGTCAGCAGCTATCCCGAGCCGGCCGGATCCGCCGCA
CAGCTTGTGCAGCAGGCCGATACCGCCATGTACCAGGCGCGTCAGGAGGGGGTCAGTCTGCGCTTCTTCAGCGAAGAACT
GACCGCCGATGCGCGCGAACGGCTGGAGCTGGGTTCGCAGCTGCGGCAGGCGATCGACGAGGATGCCCTGGAGCTGCACT
TCCAGTTGCAGACGGAGCTGGCCAGCGGACGCTGGATCGGGGCGGAGGCCTTGTTGCGCTGGGCGCACCCGGAGCGGGGC
TGGGTCTCGCCGGCCCAGTTCGTTCCGGTGGCCGAGCGTGTGGGACTCATCGGCGAGCTGGGTCGCTGGGTCCTGCGACG
GGCCTGTGAGCAGGCCAGGATCTGGCGGGATGCCGGATTGGCGTTCGGCCGTGTCGGGGTGAACGTTTCTGCGCCACAGT
TGATCGCCGGGGGCTTGGTCCAGGATGTCGACTACGCCCTGGCGCAGGCTGGTGTCCCGCCCGAGGTGCTCGCCCTGGAG
ATCACCGAGAGCGTCCTCATGGAGCAGGATCGCCACGTGGTGGCGCAGCTCGAGGCCTTGCGCGCCCGCGGAGTGCAGAT
TGCGCTGGATGACTTCGGCACGGGGTACTCGTCGCTGAGCTATCTGCGCGGCCTGCCCGTCGACCAGCTCAAGATCGATC
GCTCCTTCGTGCAGGGCCTGCCTTCGGATCAGACCCAGATCAAGATCAACCGGGCGATCATCGACCTCGGCCTTAGCCTG
GGGTACTCGGTGCTCGCAGAAGGGATCGAGACCCGGGAGCAGCAGGAGGTCCTGCTCCGGGAGGGGTGCCCGCTGGGGCA
GGGGTTCTACTTCGCCCGCCCAGAGCCGGCGGCGCAGGTCACGCCGCGCCTTTGCGGTTAG

Upstream 100 bases:

>100_bases
TTCGCGGGCTGGGCTGAGTGAGGCGTTGGCATGGACGGCATGGCTTGGGGTGTGGTGCTGGCGGCTGCGGGCGCCTTTGC
CCTCAAGGGCGTTTTGCTGC

Downstream 100 bases:

>100_bases
GGCTAGATCAGCCCGTTTGGGGAGAGCATGGGCTGGAGGGTCTGGTATCCTCGGACTCATGGTTGCGGACACCACGGCGA
TCAACCGACAGCACCGGCCG

Product: PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 686; Mature: 685

Protein sequence:

>686_residues
MPRGAPWVDSATAAQRLGAAGPLNGKAAVDLMEHDNAEQGAKGWPIPIEAIADAAFVHDRDYRIIGANTAYLERARCRAN
QALGHYYWEVFPIREGPLPGCEASMQAQAAGFAEGDVPQQARCDRIVDGSDILQSRAYPVVDEAGRYSCSLHILEDVTER
EEVRKALRERDWQYHQLLAKTAEGIVIVDGDGRILYANAAAGTFLGQEPQELVGAWFGQAIPREVPQQVELFAPGIGVRT
VEMGAQPIDWEGLNAWVINLHDVTNRESLRLLFQDRLARTLDALPPWAPVALVVIDVNDFRTINDSFGHVAGDAVLKQLG
QRLSHVRVPAELSAAAQVSRLGGDEFAVVLPRLRSLGDAAEVARRFLEVTEAPFRVQGHEVRIHLRVGVSSYPEPAGSAA
QLVQQADTAMYQARQEGVSLRFFSEELTADARERLELGSQLRQAIDEDALELHFQLQTELASGRWIGAEALLRWAHPERG
WVSPAQFVPVAERVGLIGELGRWVLRRACEQARIWRDAGLAFGRVGVNVSAPQLIAGGLVQDVDYALAQAGVPPEVLALE
ITESVLMEQDRHVVAQLEALRARGVQIALDDFGTGYSSLSYLRGLPVDQLKIDRSFVQGLPSDQTQIKINRAIIDLGLSL
GYSVLAEGIETREQQEVLLREGCPLGQGFYFARPEPAAQVTPRLCG

Sequences:

>Translated_686_residues
MPRGAPWVDSATAAQRLGAAGPLNGKAAVDLMEHDNAEQGAKGWPIPIEAIADAAFVHDRDYRIIGANTAYLERARCRAN
QALGHYYWEVFPIREGPLPGCEASMQAQAAGFAEGDVPQQARCDRIVDGSDILQSRAYPVVDEAGRYSCSLHILEDVTER
EEVRKALRERDWQYHQLLAKTAEGIVIVDGDGRILYANAAAGTFLGQEPQELVGAWFGQAIPREVPQQVELFAPGIGVRT
VEMGAQPIDWEGLNAWVINLHDVTNRESLRLLFQDRLARTLDALPPWAPVALVVIDVNDFRTINDSFGHVAGDAVLKQLG
QRLSHVRVPAELSAAAQVSRLGGDEFAVVLPRLRSLGDAAEVARRFLEVTEAPFRVQGHEVRIHLRVGVSSYPEPAGSAA
QLVQQADTAMYQARQEGVSLRFFSEELTADARERLELGSQLRQAIDEDALELHFQLQTELASGRWIGAEALLRWAHPERG
WVSPAQFVPVAERVGLIGELGRWVLRRACEQARIWRDAGLAFGRVGVNVSAPQLIAGGLVQDVDYALAQAGVPPEVLALE
ITESVLMEQDRHVVAQLEALRARGVQIALDDFGTGYSSLSYLRGLPVDQLKIDRSFVQGLPSDQTQIKINRAIIDLGLSL
GYSVLAEGIETREQQEVLLREGCPLGQGFYFARPEPAAQVTPRLCG
>Mature_685_residues
PRGAPWVDSATAAQRLGAAGPLNGKAAVDLMEHDNAEQGAKGWPIPIEAIADAAFVHDRDYRIIGANTAYLERARCRANQ
ALGHYYWEVFPIREGPLPGCEASMQAQAAGFAEGDVPQQARCDRIVDGSDILQSRAYPVVDEAGRYSCSLHILEDVTERE
EVRKALRERDWQYHQLLAKTAEGIVIVDGDGRILYANAAAGTFLGQEPQELVGAWFGQAIPREVPQQVELFAPGIGVRTV
EMGAQPIDWEGLNAWVINLHDVTNRESLRLLFQDRLARTLDALPPWAPVALVVIDVNDFRTINDSFGHVAGDAVLKQLGQ
RLSHVRVPAELSAAAQVSRLGGDEFAVVLPRLRSLGDAAEVARRFLEVTEAPFRVQGHEVRIHLRVGVSSYPEPAGSAAQ
LVQQADTAMYQARQEGVSLRFFSEELTADARERLELGSQLRQAIDEDALELHFQLQTELASGRWIGAEALLRWAHPERGW
VSPAQFVPVAERVGLIGELGRWVLRRACEQARIWRDAGLAFGRVGVNVSAPQLIAGGLVQDVDYALAQAGVPPEVLALEI
TESVLMEQDRHVVAQLEALRARGVQIALDDFGTGYSSLSYLRGLPVDQLKIDRSFVQGLPSDQTQIKINRAIIDLGLSLG
YSVLAEGIETREQQEVLLREGCPLGQGFYFARPEPAAQVTPRLCG

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=389, Percent_Identity=34.9614395886889, Blast_Score=225, Evalue=9e-60,
Organism=Escherichia coli, GI87081921, Length=417, Percent_Identity=32.3741007194245, Blast_Score=220, Evalue=3e-58,
Organism=Escherichia coli, GI226510982, Length=475, Percent_Identity=30.7368421052632, Blast_Score=191, Evalue=2e-49,
Organism=Escherichia coli, GI1790496, Length=242, Percent_Identity=34.7107438016529, Blast_Score=148, Evalue=1e-36,
Organism=Escherichia coli, GI87081980, Length=244, Percent_Identity=35.655737704918, Blast_Score=141, Evalue=1e-34,
Organism=Escherichia coli, GI87081845, Length=302, Percent_Identity=30.4635761589404, Blast_Score=141, Evalue=2e-34,
Organism=Escherichia coli, GI1786507, Length=218, Percent_Identity=33.4862385321101, Blast_Score=135, Evalue=7e-33,
Organism=Escherichia coli, GI87081743, Length=237, Percent_Identity=35.0210970464135, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI1787055, Length=304, Percent_Identity=29.6052631578947, Blast_Score=132, Evalue=9e-32,
Organism=Escherichia coli, GI1788502, Length=249, Percent_Identity=32.9317269076305, Blast_Score=113, Evalue=4e-26,
Organism=Escherichia coli, GI1788849, Length=252, Percent_Identity=28.968253968254, Blast_Score=105, Evalue=9e-24,
Organism=Escherichia coli, GI1788381, Length=560, Percent_Identity=25.3571428571429, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI87082096, Length=262, Percent_Identity=26.3358778625954, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1788956, Length=204, Percent_Identity=28.4313725490196, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI87082007, Length=141, Percent_Identity=36.8794326241135, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1789650, Length=420, Percent_Identity=21.4285714285714, Blast_Score=66, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 75201; Mature: 75070

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRGAPWVDSATAAQRLGAAGPLNGKAAVDLMEHDNAEQGAKGWPIPIEAIADAAFVHDR
CCCCCCCCCCHHHHHHCCCCCCCCCCCEEEHHHCCCCCCCCCCCCCCHHHHHHHHHEECC
DYRIIGANTAYLERARCRANQALGHYYWEVFPIREGPLPGCEASMQAQAAGFAEGDVPQQ
CEEEEECCHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCH
ARCDRIVDGSDILQSRAYPVVDEAGRYSCSLHILEDVTEREEVRKALRERDWQYHQLLAK
HHHCCCCCCHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
TAEGIVIVDGDGRILYANAAAGTFLGQEPQELVGAWFGQAIPREVPQQVELFAPGIGVRT
HCCCEEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCHHCCHHHHHHCCCCCEEE
VEMGAQPIDWEGLNAWVINLHDVTNRESLRLLFQDRLARTLDALPPWAPVALVVIDVNDF
EECCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC
RTINDSFGHVAGDAVLKQLGQRLSHVRVPAELSAAAQVSRLGGDEFAVVLPRLRSLGDAA
EECCCHHCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHH
EVARRFLEVTEAPFRVQGHEVRIHLRVGVSSYPEPAGSAAQLVQQADTAMYQARQEGVSL
HHHHHHHHHHCCCCEEECCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEE
RFFSEELTADARERLELGSQLRQAIDEDALELHFQLQTELASGRWIGAEALLRWAHPERG
EEEHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHEEEHHCCCCEECHHHHHHHCCCCCC
WVSPAQFVPVAERVGLIGELGRWVLRRACEQARIWRDAGLAFGRVGVNVSAPQLIAGGLV
CCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHH
QDVDYALAQAGVPPEVLALEITESVLMEQDRHVVAQLEALRARGVQIALDDFGTGYSSLS
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHH
YLRGLPVDQLKIDRSFVQGLPSDQTQIKINRAIIDLGLSLGYSVLAEGIETREQQEVLLR
HHHCCCHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EGCPLGQGFYFARPEPAAQVTPRLCG
CCCCCCCCEEEECCCCHHHCCCCCCC
>Mature Secondary Structure 
PRGAPWVDSATAAQRLGAAGPLNGKAAVDLMEHDNAEQGAKGWPIPIEAIADAAFVHDR
CCCCCCCCCHHHHHHCCCCCCCCCCCEEEHHHCCCCCCCCCCCCCCHHHHHHHHHEECC
DYRIIGANTAYLERARCRANQALGHYYWEVFPIREGPLPGCEASMQAQAAGFAEGDVPQQ
CEEEEECCHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCH
ARCDRIVDGSDILQSRAYPVVDEAGRYSCSLHILEDVTEREEVRKALRERDWQYHQLLAK
HHHCCCCCCHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
TAEGIVIVDGDGRILYANAAAGTFLGQEPQELVGAWFGQAIPREVPQQVELFAPGIGVRT
HCCCEEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCHHCCHHHHHHCCCCCEEE
VEMGAQPIDWEGLNAWVINLHDVTNRESLRLLFQDRLARTLDALPPWAPVALVVIDVNDF
EECCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC
RTINDSFGHVAGDAVLKQLGQRLSHVRVPAELSAAAQVSRLGGDEFAVVLPRLRSLGDAA
EECCCHHCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHH
EVARRFLEVTEAPFRVQGHEVRIHLRVGVSSYPEPAGSAAQLVQQADTAMYQARQEGVSL
HHHHHHHHHHCCCCEEECCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEE
RFFSEELTADARERLELGSQLRQAIDEDALELHFQLQTELASGRWIGAEALLRWAHPERG
EEEHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHEEEHHCCCCEECHHHHHHHCCCCCC
WVSPAQFVPVAERVGLIGELGRWVLRRACEQARIWRDAGLAFGRVGVNVSAPQLIAGGLV
CCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHH
QDVDYALAQAGVPPEVLALEITESVLMEQDRHVVAQLEALRARGVQIALDDFGTGYSSLS
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHH
YLRGLPVDQLKIDRSFVQGLPSDQTQIKINRAIIDLGLSLGYSVLAEGIETREQQEVLLR
HHHCCCHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EGCPLGQGFYFARPEPAAQVTPRLCG
CCCCCCCCEEEECCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]