Click here to switch to the map view.

The map label for this gene is secF

Identifier: 121998474

GI number: 121998474

Start: 1851380

End: 1852342

Strand: Reverse

Name: secF

Synonym: Hhal_1695

Alternate gene names: 121998474

Gene position: 1852342-1851380 (Counterclockwise)

Preceding gene: 121998475

Following gene: 121998473

Centisome position: 69.16

GC content: 65.32

Gene sequence:

>963_bases
ATGGAGATCTTCAAGAACGATCCCAATATCGACTTCCTCGGCCGGCGCCGCATCGGCTTCGGGCTCTCGGCGGTGCTGCT
GGTGCTCTCCATCGGCTCCCTGCTCTGGCAGGGCCTCAACCTGGGCATCGACTTCACCGGCGGGACCCTGGTCGAGGTCG
GCTACGAGGAGTCCGTGGAGGTCGCCGAGGTCGAGGCGGCGCTGCAGGGCACCGATTACGCCGACGCCCAGGTCCTGCAC
TTCGGCTCGCCGCGGGAGATCATGGTCCGTATCCCGCCCATGGAGGGCGTGGAACAGGCCGCGATCTCCGAAGAGGTCCT
CGCCAAGCTGCGCGAGGCCCACGACGGCGTCGACCTCCGGCGGGTCGAGTTCGTCGGCCCGCAGATCGGTCGCGAGCTCA
CCGAACAGGGTCTGCTGGCGCTGCTCTACGCCCTGGGCGGGGTGCTGGTCTACGTGGCCTTCCGCTTCGAGTACCGCTTC
GCCCTCGGTGCGGTGGCGGCGCTGGTCCACGATATCGTGCTGATCCTCGGGTTCTTCTCGCTCACCCGGCTGACCTTCGA
TCTCACCGTGCTGGCGGCGTTGCTGGCGACCATCGGCTACTCGCTGAACGACACCATTGTCATTTCCGACCGGATCCGTG
AGAACTTCCTCAAGGTCCGGAAGGGCACCACCGAGTACGTCATGAACCTGGCCATCAACCAGACCCTTTCCCGGACCCTG
GTGACCTCCTTGACCACGCTGCTGGTGGTCGGATCACTGCTATTCCTCGGCGGCGAGATCATCCACGGGTTCGCCATGGC
CCTGCTGGTTGGCGTACTGGTGGGTACCTACTCGTCGATCTTCGTCGCCAGCGCCTCCTCGCTGGCCATGGGCGTGAGCA
AGCAGGACCTTATGCCGCCTGAGAAGGAGGGGCAGGACCAGGAGGATCACGAGTCGGTGATTCCCCCTGGCGAACGCCCT
TAA

Upstream 100 bases:

>100_bases
TCGGTCTGGCCACGTCGATGTTCACCGCCATTGTCGGCACGCGGGCCGTGATCAACCTGATCTACGGCGGGCGCAAGGTC
TCGGAGCTCAAGATCTAGCC

Downstream 100 bases:

>100_bases
GCTCAGGCGCCTCCGGGGGCATGCGCCCCCCGGGGGCTAGCCGCGAGACTTCCTTGCCAACCTCCCGCTGATTTCCGAGA
CGACTCCGCGCTATGCTGTC

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MEIFKNDPNIDFLGRRRIGFGLSAVLLVLSIGSLLWQGLNLGIDFTGGTLVEVGYEESVEVAEVEAALQGTDYADAQVLH
FGSPREIMVRIPPMEGVEQAAISEEVLAKLREAHDGVDLRRVEFVGPQIGRELTEQGLLALLYALGGVLVYVAFRFEYRF
ALGAVAALVHDIVLILGFFSLTRLTFDLTVLAALLATIGYSLNDTIVISDRIRENFLKVRKGTTEYVMNLAINQTLSRTL
VTSLTTLLVVGSLLFLGGEIIHGFAMALLVGVLVGTYSSIFVASASSLAMGVSKQDLMPPEKEGQDQEDHESVIPPGERP

Sequences:

>Translated_320_residues
MEIFKNDPNIDFLGRRRIGFGLSAVLLVLSIGSLLWQGLNLGIDFTGGTLVEVGYEESVEVAEVEAALQGTDYADAQVLH
FGSPREIMVRIPPMEGVEQAAISEEVLAKLREAHDGVDLRRVEFVGPQIGRELTEQGLLALLYALGGVLVYVAFRFEYRF
ALGAVAALVHDIVLILGFFSLTRLTFDLTVLAALLATIGYSLNDTIVISDRIRENFLKVRKGTTEYVMNLAINQTLSRTL
VTSLTTLLVVGSLLFLGGEIIHGFAMALLVGVLVGTYSSIFVASASSLAMGVSKQDLMPPEKEGQDQEDHESVIPPGERP
>Mature_320_residues
MEIFKNDPNIDFLGRRRIGFGLSAVLLVLSIGSLLWQGLNLGIDFTGGTLVEVGYEESVEVAEVEAALQGTDYADAQVLH
FGSPREIMVRIPPMEGVEQAAISEEVLAKLREAHDGVDLRRVEFVGPQIGRELTEQGLLALLYALGGVLVYVAFRFEYRF
ALGAVAALVHDIVLILGFFSLTRLTFDLTVLAALLATIGYSLNDTIVISDRIRENFLKVRKGTTEYVMNLAINQTLSRTL
VTSLTTLLVVGSLLFLGGEIIHGFAMALLVGVLVGTYSSIFVASASSLAMGVSKQDLMPPEKEGQDQEDHESVIPPGERP

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=309, Percent_Identity=44.0129449838188, Blast_Score=263, Evalue=1e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 34740; Mature: 34740

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIFKNDPNIDFLGRRRIGFGLSAVLLVLSIGSLLWQGLNLGIDFTGGTLVEVGYEESVE
CCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCH
VAEVEAALQGTDYADAQVLHFGSPREIMVRIPPMEGVEQAAISEEVLAKLREAHDGVDLR
HHHHHHHHCCCCCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEE
RVEFVGPQIGRELTEQGLLALLYALGGVLVYVAFRFEYRFALGAVAALVHDIVLILGFFS
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTRLTFDLTVLAALLATIGYSLNDTIVISDRIRENFLKVRKGTTEYVMNLAINQTLSRTL
HHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
VTSLTTLLVVGSLLFLGGEIIHGFAMALLVGVLVGTYSSIFVASASSLAMGVSKQDLMPP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCC
EKEGQDQEDHESVIPPGERP
CCCCCCCCHHCCCCCCCCCC
>Mature Secondary Structure
MEIFKNDPNIDFLGRRRIGFGLSAVLLVLSIGSLLWQGLNLGIDFTGGTLVEVGYEESVE
CCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCH
VAEVEAALQGTDYADAQVLHFGSPREIMVRIPPMEGVEQAAISEEVLAKLREAHDGVDLR
HHHHHHHHCCCCCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEE
RVEFVGPQIGRELTEQGLLALLYALGGVLVYVAFRFEYRFALGAVAALVHDIVLILGFFS
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTRLTFDLTVLAALLATIGYSLNDTIVISDRIRENFLKVRKGTTEYVMNLAINQTLSRTL
HHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
VTSLTTLLVVGSLLFLGGEIIHGFAMALLVGVLVGTYSSIFVASASSLAMGVSKQDLMPP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCC
EKEGQDQEDHESVIPPGERP
CCCCCCCCHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]