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The map label for this gene is ygaD [H]

Identifier: 121998435

GI number: 121998435

Start: 1809823

End: 1810320

Strand: Reverse

Name: ygaD [H]

Synonym: Hhal_1656

Alternate gene names: 121998435

Gene position: 1810320-1809823 (Counterclockwise)

Preceding gene: 121998438

Following gene: 121998434

Centisome position: 67.59

GC content: 70.88

Gene sequence:

>498_bases
ATGGTACACGACGACCGGTCACTGCAAGAGTCTGCGCTCAGGGTTGGCGAGGCCCTGCAGCGGGGGGGGCTGAGCCTGGC
CGTGGCCGAGTCTTGCACGGGCGGCCTGCTCGCTAAGATCCTGACCGATGGCGGCGGGGCGTCGAACTGGTTTGAGCGTG
GTCTGGTGGTCTATAGCAATGCAGCCAAGCGCGACCTGGCCGGGGTCCCGGAGCGGCTGATCGAGGAACACGGTGCAGTC
AGCCAGGTGGTGGCCGAGGCCCTGGCCTTGGGGGTGCTGGGGCGCGCCCCGGTGACCCACAGTGTGGCGATCACCGGTGT
CGCCGGTCCCGACGGCGGCACGGTGAGCAAGCCGGTGGGAACGGTCTGGATCGCCTGGGGGTCGCCGGCCGGGGTCGATG
CGCGGCCGTGTCGGTTCGCGGGCGACCGGGATACCGTGCGTCGGGCGAGCGTGGCCGAGGCGCTGAACGGGGTACTGGAT
CGTTGTCCGGGGGCGTGA

Upstream 100 bases:

>100_bases
CGCATCATCGGGGTATGCCCGGCGCCATTGGTGGCGGTTTCAGCCTCTTGGGTCGCTGCCATGGGGGTGGTTCCGGTGCC
GCGTTGAATGAGGGGGAGAT

Downstream 100 bases:

>100_bases
CGGCGGCAAGCTCTTCCCGCAGGCTGTTAGAATCGTTCGACAGTGCCGGGTGAAAGACTCGGTTGGGTTGTGGAATAATC
CGCGAGCTTGGCGGCGGGCC

Product: CinA domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MVHDDRSLQESALRVGEALQRGGLSLAVAESCTGGLLAKILTDGGGASNWFERGLVVYSNAAKRDLAGVPERLIEEHGAV
SQVVAEALALGVLGRAPVTHSVAITGVAGPDGGTVSKPVGTVWIAWGSPAGVDARPCRFAGDRDTVRRASVAEALNGVLD
RCPGA

Sequences:

>Translated_165_residues
MVHDDRSLQESALRVGEALQRGGLSLAVAESCTGGLLAKILTDGGGASNWFERGLVVYSNAAKRDLAGVPERLIEEHGAV
SQVVAEALALGVLGRAPVTHSVAITGVAGPDGGTVSKPVGTVWIAWGSPAGVDARPCRFAGDRDTVRRASVAEALNGVLD
RCPGA
>Mature_165_residues
MVHDDRSLQESALRVGEALQRGGLSLAVAESCTGGLLAKILTDGGGASNWFERGLVVYSNAAKRDLAGVPERLIEEHGAV
SQVVAEALALGVLGRAPVTHSVAITGVAGPDGGTVSKPVGTVWIAWGSPAGVDARPCRFAGDRDTVRRASVAEALNGVLD
RCPGA

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=159, Percent_Identity=47.1698113207547, Blast_Score=145, Evalue=1e-36,
Organism=Escherichia coli, GI1787818, Length=123, Percent_Identity=39.8373983739837, Blast_Score=87, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136 [H]

Pfam domain/function: PF02464 CinA [H]

EC number: NA

Molecular weight: Translated: 16835; Mature: 16835

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVHDDRSLQESALRVGEALQRGGLSLAVAESCTGGLLAKILTDGGGASNWFERGLVVYSN
CCCCCHHHHHHHHHHHHHHHHCCCEEEEHHHCCHHHHHHHHHCCCCCCHHHHCCEEEECC
AAKRDLAGVPERLIEEHGAVSQVVAEALALGVLGRAPVTHSVAITGVAGPDGGTVSKPVG
CHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCC
TVWIAWGSPAGVDARPCRFAGDRDTVRRASVAEALNGVLDRCPGA
EEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVHDDRSLQESALRVGEALQRGGLSLAVAESCTGGLLAKILTDGGGASNWFERGLVVYSN
CCCCCHHHHHHHHHHHHHHHHCCCEEEEHHHCCHHHHHHHHHCCCCCCHHHHCCEEEECC
AAKRDLAGVPERLIEEHGAVSQVVAEALALGVLGRAPVTHSVAITGVAGPDGGTVSKPVG
CHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCC
TVWIAWGSPAGVDARPCRFAGDRDTVRRASVAEALNGVLDRCPGA
EEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]