| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998406
Identifier: 121998406
GI number: 121998406
Start: 1774923
End: 1776503
Strand: Reverse
Name: 121998406
Synonym: Hhal_1627
Alternate gene names: NA
Gene position: 1776503-1774923 (Counterclockwise)
Preceding gene: 121998407
Following gene: 121998402
Centisome position: 66.33
GC content: 67.87
Gene sequence:
>1581_bases ATGCTCGGGGGTCGAGGCACGGCGTGGCGGGACTTGGGACTAGCAGGGATCGCCCTGGCGGCGATTGGCTTGGCCCTGTA CCAGCTGCTGAGCGACGAGGCCGGGATCGAGCGCGAGGCGCTGACGATCGATCAGACTCCGGCCACCATCTATCGCCCCG CGGCCGAAGAGGCGGGACCGGTGGTGCTGGTTTCCCACGGTTTCGCCGGTTCGCGGCCGCTCATGGAACCGTTCGCCCTG ACGTTGGCCGGCAACGGCTACACCGTGGTGAGTTTTGATTACCTTGGCCACGGCCGCAATCCGCGGCCTCTGCACGGAGA CATTACCGCGCAGGACGGCGCGGCCCAGGCACTGGTGGATCAGACCGAGCGGGTCGCCGAGTATGTTCGTGCCGAGTTGA TGGGCGAGGACGATAAGCTGGCGGTGCTCGGCCACTCCATGGCCTCGAATATCATCGTGCGTTTTGCCCAGCAGCGGGAC GATGTGCTGGCCACGGTGGGAGTGTCGATGTTCGCGCCGACCGTGGACGCTGAGACGCCTGGCAACCTGATGAGTGTTGT CGGGGGGTTCGAGCGCCGTCTGCAGGAAGAGGGCCAACGCGTGGTGGCCATGGCCTTTGACGATCTGCAGCCCGAAGAGG TGGAGATCGGCCGGACCTATGGCGACTTCCCCGATGGTACGGCGCGGCGTATTGCTGTGGCCCCCGGGGTGGAGCACGTC GCGGTGCTCTACAGTCAGGTCAGCCTGGAAGAGGCCGTGTCTTGGCTGGACCAGGCGTTCGGGCGCGATAGCGAGCGCTG GGTCGCTGCGCGCGGTCCATGGGTCGCGCTCCTGTTGGCGGCAGTGATTGCCCTGGCGCGGCCGGGGGCGCGCCTGTTGC CGCGGGTTTCAGCGGCGGGGCGGGGCGCTGGCGCGGGGTGGCGTCGGTTGGCGGTTGTCGCCGGTATCCCGGCGCTTGCT ACGCCACTGCTCCTTGCTCCCGTGCCGACGGATTTCCTGCCGGTGGTGATCGGGGACTACGTCGCTATCCACTTCGCGCT GTTCGGGGCGTTGAGCGCCGCACTGCTGTGGTGGACCGCTGGGCGGCCGGGTCCGCGCGGCATCGCGGCGGCCATCGCGT TGGGTGGCGGAGCGGGGCGGCGCTGGTTGCTCGGGGCTGCAGCGGTGATCGGTTACTGCCTGCTGGTGCTCGGCGCGGTG CTGGATCAGTTCGTGACGGTCTTCTATCCAGCCGTGGAACGGTTGCCGCTGTTGTTGGCGATGGTGGCGGGTACGCTGCC GTACTTCCTGGCCGACGAGTGGCTGACCCGCGGGCAGGGGATGCGTCGCGGTGTCTATCCCGCCACCAAGGTGCTCTTCC TGGTTTCTCTGGGGCTGGCCGTGGCGCTGGACCCGGATGGGCTCTTCTTCCTGCTGTTGATCGTCCCGGTCGTGTTGGTG TTCTTTCTGGTCTACGGGCTGTTCAGCCGGTGGGTCTACCGGCATACGGGGCATCCGCTGGTTGCCGGGTTGGCCAACGC GGTGGCGTTCGCTTGGGCACTGGGCGTGACATTCCCGATGCTGGGAGGGGCTGCCGGCTGA
Upstream 100 bases:
>100_bases GTGGCAGTGGGGGCTCAAAGCACGCAATCGCGGTGATCAAGGGGTGGCGACGAAGACCGCCGACGCGGACGCGTCCTCCT CCTGAGGGCAAGGGCGAATC
Downstream 100 bases:
>100_bases TACCACGACTCATCCAGGTCGGGCCCAAGACGGGGCTGTGGGCCAGCGAGGCGAGGGTCAGGTCGGAGTCGGCCGACGGT GGTCAGTGTCAGCGGTAGTG
Product: dienelactone hydrolase
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 526; Mature: 526
Protein sequence:
>526_residues MLGGRGTAWRDLGLAGIALAAIGLALYQLLSDEAGIEREALTIDQTPATIYRPAAEEAGPVVLVSHGFAGSRPLMEPFAL TLAGNGYTVVSFDYLGHGRNPRPLHGDITAQDGAAQALVDQTERVAEYVRAELMGEDDKLAVLGHSMASNIIVRFAQQRD DVLATVGVSMFAPTVDAETPGNLMSVVGGFERRLQEEGQRVVAMAFDDLQPEEVEIGRTYGDFPDGTARRIAVAPGVEHV AVLYSQVSLEEAVSWLDQAFGRDSERWVAARGPWVALLLAAVIALARPGARLLPRVSAAGRGAGAGWRRLAVVAGIPALA TPLLLAPVPTDFLPVVIGDYVAIHFALFGALSAALLWWTAGRPGPRGIAAAIALGGGAGRRWLLGAAAVIGYCLLVLGAV LDQFVTVFYPAVERLPLLLAMVAGTLPYFLADEWLTRGQGMRRGVYPATKVLFLVSLGLAVALDPDGLFFLLLIVPVVLV FFLVYGLFSRWVYRHTGHPLVAGLANAVAFAWALGVTFPMLGGAAG
Sequences:
>Translated_526_residues MLGGRGTAWRDLGLAGIALAAIGLALYQLLSDEAGIEREALTIDQTPATIYRPAAEEAGPVVLVSHGFAGSRPLMEPFAL TLAGNGYTVVSFDYLGHGRNPRPLHGDITAQDGAAQALVDQTERVAEYVRAELMGEDDKLAVLGHSMASNIIVRFAQQRD DVLATVGVSMFAPTVDAETPGNLMSVVGGFERRLQEEGQRVVAMAFDDLQPEEVEIGRTYGDFPDGTARRIAVAPGVEHV AVLYSQVSLEEAVSWLDQAFGRDSERWVAARGPWVALLLAAVIALARPGARLLPRVSAAGRGAGAGWRRLAVVAGIPALA TPLLLAPVPTDFLPVVIGDYVAIHFALFGALSAALLWWTAGRPGPRGIAAAIALGGGAGRRWLLGAAAVIGYCLLVLGAV LDQFVTVFYPAVERLPLLLAMVAGTLPYFLADEWLTRGQGMRRGVYPATKVLFLVSLGLAVALDPDGLFFLLLIVPVVLV FFLVYGLFSRWVYRHTGHPLVAGLANAVAFAWALGVTFPMLGGAAG >Mature_526_residues MLGGRGTAWRDLGLAGIALAAIGLALYQLLSDEAGIEREALTIDQTPATIYRPAAEEAGPVVLVSHGFAGSRPLMEPFAL TLAGNGYTVVSFDYLGHGRNPRPLHGDITAQDGAAQALVDQTERVAEYVRAELMGEDDKLAVLGHSMASNIIVRFAQQRD DVLATVGVSMFAPTVDAETPGNLMSVVGGFERRLQEEGQRVVAMAFDDLQPEEVEIGRTYGDFPDGTARRIAVAPGVEHV AVLYSQVSLEEAVSWLDQAFGRDSERWVAARGPWVALLLAAVIALARPGARLLPRVSAAGRGAGAGWRRLAVVAGIPALA TPLLLAPVPTDFLPVVIGDYVAIHFALFGALSAALLWWTAGRPGPRGIAAAIALGGGAGRRWLLGAAAVIGYCLLVLGAV LDQFVTVFYPAVERLPLLLAMVAGTLPYFLADEWLTRGQGMRRGVYPATKVLFLVSLGLAVALDPDGLFFLLLIVPVVLV FFLVYGLFSRWVYRHTGHPLVAGLANAVAFAWALGVTFPMLGGAAG
Specific function: Unknown
COG id: COG1073
COG function: function code R; Hydrolases of the alpha/beta superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55643; Mature: 55643
Theoretical pI: Translated: 5.45; Mature: 5.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLGGRGTAWRDLGLAGIALAAIGLALYQLLSDEAGIEREALTIDQTPATIYRPAAEEAGP CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHCCCCHHHCCC VVLVSHGFAGSRPLMEPFALTLAGNGYTVVSFDYLGHGRNPRPLHGDITAQDGAAQALVD EEEEECCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH QTERVAEYVRAELMGEDDKLAVLGHSMASNIIVRFAQQRDDVLATVGVSMFAPTVDAETP HHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC GNLMSVVGGFERRLQEEGQRVVAMAFDDLQPEEVEIGRTYGDFPDGTARRIAVAPGVEHV CHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEECCCCCCCCCCCCCCEEEECCCHHHH AVLYSQVSLEEAVSWLDQAFGRDSERWVAARGPWVALLLAAVIALARPGARLLPRVSAAG HHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCCCHHHCCCHHCCC RGAGAGWRRLAVVAGIPALATPLLLAPVPTDFLPVVIGDYVAIHFALFGALSAALLWWTA CCCCCHHHHHHHHHCCHHHHHCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GRPGPRGIAAAIALGGGAGRRWLLGAAAVIGYCLLVLGAVLDQFVTVFYPAVERLPLLLA CCCCCCHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MVAGTLPYFLADEWLTRGQGMRRGVYPATKVLFLVSLGLAVALDPDGLFFLLLIVPVVLV HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHH FFLVYGLFSRWVYRHTGHPLVAGLANAVAFAWALGVTFPMLGGAAG HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MLGGRGTAWRDLGLAGIALAAIGLALYQLLSDEAGIEREALTIDQTPATIYRPAAEEAGP CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHCCCCHHHCCC VVLVSHGFAGSRPLMEPFALTLAGNGYTVVSFDYLGHGRNPRPLHGDITAQDGAAQALVD EEEEECCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH QTERVAEYVRAELMGEDDKLAVLGHSMASNIIVRFAQQRDDVLATVGVSMFAPTVDAETP HHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC GNLMSVVGGFERRLQEEGQRVVAMAFDDLQPEEVEIGRTYGDFPDGTARRIAVAPGVEHV CHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEECCCCCCCCCCCCCCEEEECCCHHHH AVLYSQVSLEEAVSWLDQAFGRDSERWVAARGPWVALLLAAVIALARPGARLLPRVSAAG HHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCCCHHHCCCHHCCC RGAGAGWRRLAVVAGIPALATPLLLAPVPTDFLPVVIGDYVAIHFALFGALSAALLWWTA CCCCCHHHHHHHHHCCHHHHHCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GRPGPRGIAAAIALGGGAGRRWLLGAAAVIGYCLLVLGAVLDQFVTVFYPAVERLPLLLA CCCCCCHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MVAGTLPYFLADEWLTRGQGMRRGVYPATKVLFLVSLGLAVALDPDGLFFLLLIVPVVLV HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHH FFLVYGLFSRWVYRHTGHPLVAGLANAVAFAWALGVTFPMLGGAAG HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA