Click here to switch to the map view.

The map label for this gene is pufC [H]

Identifier: 121998382

GI number: 121998382

Start: 1744480

End: 1745568

Strand: Reverse

Name: pufC [H]

Synonym: Hhal_1603

Alternate gene names: 121998382

Gene position: 1745568-1744480 (Counterclockwise)

Preceding gene: 121998383

Following gene: 121998376

Centisome position: 65.17

GC content: 64.28

Gene sequence:

>1089_bases
ATGAGCAGTAAAATGTATCTGAACCGATCCTTGGCAGTTGGTGCCCTGTCCGCCGGCCTCGCGGTCGTCGTGGGGTGCGA
GCGCCCCCCGGTGGACTCCGAGCAGAAGGGGTACCGTGGCACCGGCATGGAAGAGGTCACCAACCCGCGGCTGCGGGACG
ATGACCTCCACCTGGCGCCGGAGGCGGCGGACCCGGTCTCGGCCGAGGGCCCCAAGGCTGGCGAGATCTACCAGAACGTC
GAGGTGCTCACCGACCTGAGCGTCGCCGAGTTTACCCGGCTCATGCAGAGCATGACCGACTGGGTGGCGCCGGATGAGGG
ATGCACTTATTGCCACGACGGCAACGACTTCGCCAGCGAGGAGCTGTACACGTACCAAGTCTCTCGGCAGATGATCGAGA
TGAATCGGTACGTGAACGCCAACTGGGAAAGCCACATGGATGACACGGGCGTGACCTGCTACACGTGTCACCGTGGCGAG
AATCTGCCGGAGGAGAGCTGGTTCGCCGAGCCTGAGCTGGATTTCAACGTCCATGGGCTTGGCAACGACCAGATGCAGAA
CCTGGCCAGCGAGAAGGTGGGGTTCACCTCGCTGCCGCGGAACGTGTTCGAGCGCTATCTGCTTGGCCACGACGATCTGC
GGGTCGAGGGTGACACGATTCTCCCCAACCTGGACGAGTGGGACGTCTCGCTGCAGGACACCGAGGCCTCCTACGGCCTG
ATGATGCATATGTCCGACGCGACCGGCTCCAACTGCACCACGTGCCACAATACCGGCCGTCTGGGGCAGTGGGACGAGAG
CCCGGTGGAGCGGGAGATCTCCTGGCACGGCATCCGGATGACGCGTGACATCAACGCCAACTGGATGGAGCCGCTGGAGG
CTGGTCAGCCCGACGTCCGCCTGGGGCCGACTGGTGACATCGCCAAGGTCCAGTGCGCCACCTGCCACTACGGTGAGCAG
CTGCCGCTGGACGGGGCCAAGATGGTCGATGACTATCCGGGCCTGATGGGCGAGGAGGACGAGGACTTCGACTTCCTGCA
GTTCGGTGATCTCGGCACGGAGGGTCTCCGCGACCGCGACGCCGAGTAA

Upstream 100 bases:

>100_bases
TTGAGAACTGGTACCTGTGGGGTGTCCACCACGGCATTGCCCCCGAGTATCCGGAGTTCTTCACACCGGCAGTGGATCCG
GCAGCAGGGGGGACGGAGTG

Downstream 100 bases:

>100_bases
GCGCAGGGATCGAACCGGTGGCCGTTTCGGCCTCCGGGTACCGTCCTTTAAAACGGCGCCTCCGGGCGCCGTTTTTTTGT
GCGTTTGTAGACGGAAGTGT

Product: photosynthetic reaction center subunit cytochrome c

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 361

Protein sequence:

>362_residues
MSSKMYLNRSLAVGALSAGLAVVVGCERPPVDSEQKGYRGTGMEEVTNPRLRDDDLHLAPEAADPVSAEGPKAGEIYQNV
EVLTDLSVAEFTRLMQSMTDWVAPDEGCTYCHDGNDFASEELYTYQVSRQMIEMNRYVNANWESHMDDTGVTCYTCHRGE
NLPEESWFAEPELDFNVHGLGNDQMQNLASEKVGFTSLPRNVFERYLLGHDDLRVEGDTILPNLDEWDVSLQDTEASYGL
MMHMSDATGSNCTTCHNTGRLGQWDESPVEREISWHGIRMTRDINANWMEPLEAGQPDVRLGPTGDIAKVQCATCHYGEQ
LPLDGAKMVDDYPGLMGEEDEDFDFLQFGDLGTEGLRDRDAE

Sequences:

>Translated_362_residues
MSSKMYLNRSLAVGALSAGLAVVVGCERPPVDSEQKGYRGTGMEEVTNPRLRDDDLHLAPEAADPVSAEGPKAGEIYQNV
EVLTDLSVAEFTRLMQSMTDWVAPDEGCTYCHDGNDFASEELYTYQVSRQMIEMNRYVNANWESHMDDTGVTCYTCHRGE
NLPEESWFAEPELDFNVHGLGNDQMQNLASEKVGFTSLPRNVFERYLLGHDDLRVEGDTILPNLDEWDVSLQDTEASYGL
MMHMSDATGSNCTTCHNTGRLGQWDESPVEREISWHGIRMTRDINANWMEPLEAGQPDVRLGPTGDIAKVQCATCHYGEQ
LPLDGAKMVDDYPGLMGEEDEDFDFLQFGDLGTEGLRDRDAE
>Mature_361_residues
SSKMYLNRSLAVGALSAGLAVVVGCERPPVDSEQKGYRGTGMEEVTNPRLRDDDLHLAPEAADPVSAEGPKAGEIYQNVE
VLTDLSVAEFTRLMQSMTDWVAPDEGCTYCHDGNDFASEELYTYQVSRQMIEMNRYVNANWESHMDDTGVTCYTCHRGEN
LPEESWFAEPELDFNVHGLGNDQMQNLASEKVGFTSLPRNVFERYLLGHDDLRVEGDTILPNLDEWDVSLQDTEASYGLM
MHMSDATGSNCTTCHNTGRLGQWDESPVEREISWHGIRMTRDINANWMEPLEAGQPDVRLGPTGDIAKVQCATCHYGEQL
PLDGAKMVDDYPGLMGEEDEDFDFLQFGDLGTEGLRDRDAE

Specific function: The reaction center of purple bacteria contains a tightly bound cytochrome molecule which re-reduces the photo oxidized primary electron donor [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011031
- InterPro:   IPR023119
- InterPro:   IPR003158 [H]

Pfam domain/function: PF02276 CytoC_RC [H]

EC number: NA

Molecular weight: Translated: 40447; Mature: 40316

Theoretical pI: Translated: 4.02; Mature: 4.02

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51008 MULTIHEME_CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSKMYLNRSLAVGALSAGLAVVVGCERPPVDSEQKGYRGTGMEEVTNPRLRDDDLHLAP
CCCCEEECCCHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCEECC
EAADPVSAEGPKAGEIYQNVEVLTDLSVAEFTRLMQSMTDWVAPDEGCTYCHDGNDFASE
CCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCC
ELYTYQVSRQMIEMNRYVNANWESHMDDTGVTCYTCHRGENLPEESWFAEPELDFNVHGL
HHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCEEEEECCCCCCCHHHCCCCCCCCEEEECC
GNDQMQNLASEKVGFTSLPRNVFERYLLGHDDLRVEGDTILPNLDEWDVSLQDTEASYGL
CCHHHHHHHHHHCCCHHCCHHHHHHHHCCCCCEEEECCEECCCCCCCCCEEECCCCCCEE
MMHMSDATGSNCTTCHNTGRLGQWDESPVEREISWHGIRMTRDINANWMEPLEAGQPDVR
EEEECCCCCCCCCEECCCCCCCCCCCCCHHHCCEECEEEEEEECCCCCCCHHHCCCCCEE
LGPTGDIAKVQCATCHYGEQLPLDGAKMVDDYPGLMGEEDEDFDFLQFGDLGTEGLRDRD
ECCCCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCC
AE
CC
>Mature Secondary Structure 
SSKMYLNRSLAVGALSAGLAVVVGCERPPVDSEQKGYRGTGMEEVTNPRLRDDDLHLAP
CCCEEECCCHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCEECC
EAADPVSAEGPKAGEIYQNVEVLTDLSVAEFTRLMQSMTDWVAPDEGCTYCHDGNDFASE
CCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCC
ELYTYQVSRQMIEMNRYVNANWESHMDDTGVTCYTCHRGENLPEESWFAEPELDFNVHGL
HHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCEEEEECCCCCCCHHHCCCCCCCCEEEECC
GNDQMQNLASEKVGFTSLPRNVFERYLLGHDDLRVEGDTILPNLDEWDVSLQDTEASYGL
CCHHHHHHHHHHCCCHHCCHHHHHHHHCCCCCEEEECCEECCCCCCCCCEEECCCCCCEE
MMHMSDATGSNCTTCHNTGRLGQWDESPVEREISWHGIRMTRDINANWMEPLEAGQPDVR
EEEECCCCCCCCCEECCCCCCCCCCCCCHHHCCEECEEEEEEECCCCCCCHHHCCCCCEE
LGPTGDIAKVQCATCHYGEQLPLDGAKMVDDYPGLMGEEDEDFDFLQFGDLGTEGLRDRD
ECCCCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCC
AE
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8300574 [H]