Click here to switch to the map view.

The map label for this gene is pufM [H]

Identifier: 121998383

GI number: 121998383

Start: 1745568

End: 1746539

Strand: Reverse

Name: pufM [H]

Synonym: Hhal_1604

Alternate gene names: 121998383

Gene position: 1746539-1745568 (Counterclockwise)

Preceding gene: 121998384

Following gene: 121998382

Centisome position: 65.21

GC content: 63.99

Gene sequence:

>972_bases
ATGGCTGAGTATCAGAATATCTTTACCCGTGTTCAGGTCCGGGGCCCGACGGATCCGGGCGTAGAGCTCCCGGCCGCCGA
CTGGCCGCGGACCAAGGGGTCGACGCACTCCTGGTTGCTCGGGAAGATCGGCGACGCACAGGTCGGCCCGATCTACCTCG
GCACCACCGGTGTGATGTCGATCCTCTTCGGTCTCCTGTCCATCGTCATCATTGGCATGAACATGCTGGCGTCCGTGGAC
TGGAGCCCGATTGAGTGGATTCGTCAGTTCTTCTGGGTGGCGCTGGAGCCGCCGCCGCCGGAGTACGGCCTTAGCCTCCC
GCCGCTTAACGACGGTGGCTGGTGGCTGATCGCCGGCTTCACGCTGACCCTGTCGATCCTGCTGTGGTGGGTGCGGACCT
ATAACCGGGCGCGTGCGCTCGGGCTGGGGACGCACGTGGCTTGGGCCTTCGCTGCTGCGATCTTCCTGTTCCTCGCCATC
GGCTTCATCTGGCCGGTGCTGATGGGCAGCTGGGCGAAGAGCGTGCCGTTCGGCATCTTCCCGCACCTCGATTGGACCAC
GGCCTTCTCGCTGCGGTACGGGAACCTCTACTACAACCCGTTCCACATGCTGTCGATCGTGTTCCTGTTCGGCTCGGCTC
TGCTGTTCGCGATGCACGGCGCCACCATTCTGGCGGCGGGTCGCTACAACGCGGAGCGTGAGATCGATCAGATCACTGAC
CGCGGTACCGCTGCGGAGCGTTCGGCGCTGTTCTGGCGCTGGACCATGGGCTTCAACGCCACGATGGAGTCCATCCACCG
GTGGGGTTACTGGTTCGCCATCCTCTGCGTGATTACGGGTGGCATCGGTATCCTGCTGACCGGCACCGTGGTTGAGAACT
GGTACCTGTGGGGTGTCCACCACGGCATTGCCCCCGAGTATCCGGAGTTCTTCACACCGGCAGTGGATCCGGCAGCAGGG
GGGACGGAGTGA

Upstream 100 bases:

>100_bases
GTGCATCATCATTAGCGGCCCGTTCTGGACCCGCGGTTGGCCCGAGTGGTGGAACTGGTGGCTCAACGTCCCGATCTGGT
CCTGGGGGGGGTAATCAGAA

Downstream 100 bases:

>100_bases
TGAGCAGTAAAATGTATCTGAACCGATCCTTGGCAGTTGGTGCCCTGTCCGCCGGCCTCGCGGTCGTCGTGGGGTGCGAG
CGCCCCCCGGTGGACTCCGA

Product: photosynthetic reaction center subunit M

Products: NA

Alternate protein names: Photosynthetic reaction center M subunit [H]

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MAEYQNIFTRVQVRGPTDPGVELPAADWPRTKGSTHSWLLGKIGDAQVGPIYLGTTGVMSILFGLLSIVIIGMNMLASVD
WSPIEWIRQFFWVALEPPPPEYGLSLPPLNDGGWWLIAGFTLTLSILLWWVRTYNRARALGLGTHVAWAFAAAIFLFLAI
GFIWPVLMGSWAKSVPFGIFPHLDWTTAFSLRYGNLYYNPFHMLSIVFLFGSALLFAMHGATILAAGRYNAEREIDQITD
RGTAAERSALFWRWTMGFNATMESIHRWGYWFAILCVITGGIGILLTGTVVENWYLWGVHHGIAPEYPEFFTPAVDPAAG
GTE

Sequences:

>Translated_323_residues
MAEYQNIFTRVQVRGPTDPGVELPAADWPRTKGSTHSWLLGKIGDAQVGPIYLGTTGVMSILFGLLSIVIIGMNMLASVD
WSPIEWIRQFFWVALEPPPPEYGLSLPPLNDGGWWLIAGFTLTLSILLWWVRTYNRARALGLGTHVAWAFAAAIFLFLAI
GFIWPVLMGSWAKSVPFGIFPHLDWTTAFSLRYGNLYYNPFHMLSIVFLFGSALLFAMHGATILAAGRYNAEREIDQITD
RGTAAERSALFWRWTMGFNATMESIHRWGYWFAILCVITGGIGILLTGTVVENWYLWGVHHGIAPEYPEFFTPAVDPAAG
GTE
>Mature_322_residues
AEYQNIFTRVQVRGPTDPGVELPAADWPRTKGSTHSWLLGKIGDAQVGPIYLGTTGVMSILFGLLSIVIIGMNMLASVDW
SPIEWIRQFFWVALEPPPPEYGLSLPPLNDGGWWLIAGFTLTLSILLWWVRTYNRARALGLGTHVAWAFAAAIFLFLAIG
FIWPVLMGSWAKSVPFGIFPHLDWTTAFSLRYGNLYYNPFHMLSIVFLFGSALLFAMHGATILAAGRYNAEREIDQITDR
GTAAERSALFWRWTMGFNATMESIHRWGYWFAILCVITGGIGILLTGTVVENWYLWGVHHGIAPEYPEFFTPAVDPAAGG
TE

Specific function: The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the reaction center pufL/M/psbA/D family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000484
- InterPro:   IPR005781 [H]

Pfam domain/function: PF00124 Photo_RC [H]

EC number: NA

Molecular weight: Translated: 36037; Mature: 35906

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS00244 REACTION_CENTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEYQNIFTRVQVRGPTDPGVELPAADWPRTKGSTHSWLLGKIGDAQVGPIYLGTTGVMS
CCCHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEECHHHHHH
ILFGLLSIVIIGMNMLASVDWSPIEWIRQFFWVALEPPPPEYGLSLPPLNDGGWWLIAGF
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCEEEEHHH
TLTLSILLWWVRTYNRARALGLGTHVAWAFAAAIFLFLAIGFIWPVLMGSWAKSVPFGIF
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCC
PHLDWTTAFSLRYGNLYYNPFHMLSIVFLFGSALLFAMHGATILAAGRYNAEREIDQITD
CCCCCCEEEEEEECCEEECHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHC
RGTAAERSALFWRWTMGFNATMESIHRWGYWFAILCVITGGIGILLTGTVVENWYLWGVH
CCCCHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHEEEEHHHHHCEEEEEEE
HGIAPEYPEFFTPAVDPAAGGTE
CCCCCCCCHHCCCCCCCCCCCCC
>Mature Secondary Structure 
AEYQNIFTRVQVRGPTDPGVELPAADWPRTKGSTHSWLLGKIGDAQVGPIYLGTTGVMS
CCHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEECHHHHHH
ILFGLLSIVIIGMNMLASVDWSPIEWIRQFFWVALEPPPPEYGLSLPPLNDGGWWLIAGF
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCEEEEHHH
TLTLSILLWWVRTYNRARALGLGTHVAWAFAAAIFLFLAIGFIWPVLMGSWAKSVPFGIF
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCC
PHLDWTTAFSLRYGNLYYNPFHMLSIVFLFGSALLFAMHGATILAAGRYNAEREIDQITD
CCCCCCEEEEEEECCEEECHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHC
RGTAAERSALFWRWTMGFNATMESIHRWGYWFAILCVITGGIGILLTGTVVENWYLWGVH
CCCCHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHEEEEHHHHHCEEEEEEE
HGIAPEYPEFFTPAVDPAAGGTE
CCCCCCCCHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8300574 [H]