Click here to switch to the map view.

The map label for this gene is wza [H]

Identifier: 121998318

GI number: 121998318

Start: 1670549

End: 1671172

Strand: Reverse

Name: wza [H]

Synonym: Hhal_1536

Alternate gene names: 121998318

Gene position: 1671172-1670549 (Counterclockwise)

Preceding gene: 121998320

Following gene: 121998317

Centisome position: 62.39

GC content: 61.38

Gene sequence:

>624_bases
ATGGAGCCTGCGCGCGCGGCTACCGTCGCTGGGAGTCTGATCGTCGCGGCCATCCTCTCTCTTGTGGTTGGCTGTGGTGC
CCCACCCTCCGCGCCAAGCACGGTGGATGACCCGGAAATCGAGCAGTACGTCATCGGCCCCGGCGACACCCTGAACGTTC
AGGTCTGGAATAACCCCGAGCTCTCAATCAGCGTTCCCGTCCGGCCGGATGGGCAGATTTCGACTCCCCTGGTCGAGGAT
GTGCAAGCCAGCGGCGTTACGCCCACCGAATTGGCGCGGGTGATGGAGGATGAGCTGAGCCTCTACCTCCGCGATCCGGT
CGTCACCGTGATCGTGACCGGTTTTGCCGGACCGTACGATCGCCAAGTGCGGGTCATCGGTCAGGCCACCGAGCCGCGCG
CCCTGCAGTACCGAGAGGATATGTCCGTCATGGATGTGATGATTGAAGTGGGGGGGATGACGGATGTTGCTGCCGGTAAT
CGCACGGTTCTGGTTCGCCACGAGGACGGCGAGCGCAATCAGTATCGGGTTCGGCTTCACGACCTGATCAATCGCGGTGA
AATCGAGGCCAACATCGATATCAAGCCCGGCGACGTGCTGATTATACCGGAACGATTTTTCTGA

Upstream 100 bases:

>100_bases
ATTGTCACTGTCTCAGTTTCGAGCCGTGGAAGTCACTCGTCGCTTTTGGTTAACTGCGATGGTATCCAACCCACGCGCCA
GCATGAGCAAGGAGTCGCCC

Downstream 100 bases:

>100_bases
TATCGGCTCGGCCATGGATTGGGGGTGCAGGGAACTGCGCCCCCTTGGAGGCGCGCAGTGCGGTTTTTCGGTCATTATAT
CCCGCGCAAGGTTCTTTTAC

Product: polysaccharide export protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MEPARAATVAGSLIVAAILSLVVGCGAPPSAPSTVDDPEIEQYVIGPGDTLNVQVWNNPELSISVPVRPDGQISTPLVED
VQASGVTPTELARVMEDELSLYLRDPVVTVIVTGFAGPYDRQVRVIGQATEPRALQYREDMSVMDVMIEVGGMTDVAAGN
RTVLVRHEDGERNQYRVRLHDLINRGEIEANIDIKPGDVLIIPERFF

Sequences:

>Translated_207_residues
MEPARAATVAGSLIVAAILSLVVGCGAPPSAPSTVDDPEIEQYVIGPGDTLNVQVWNNPELSISVPVRPDGQISTPLVED
VQASGVTPTELARVMEDELSLYLRDPVVTVIVTGFAGPYDRQVRVIGQATEPRALQYREDMSVMDVMIEVGGMTDVAAGN
RTVLVRHEDGERNQYRVRLHDLINRGEIEANIDIKPGDVLIIPERFF
>Mature_207_residues
MEPARAATVAGSLIVAAILSLVVGCGAPPSAPSTVDDPEIEQYVIGPGDTLNVQVWNNPELSISVPVRPDGQISTPLVED
VQASGVTPTELARVMEDELSLYLRDPVVTVIVTGFAGPYDRQVRVIGQATEPRALQYREDMSVMDVMIEVGGMTDVAAGN
RTVLVRHEDGERNQYRVRLHDLINRGEIEANIDIKPGDVLIIPERFF

Specific function: Probably involved in the export of the extracellular polysaccharide colanic acid from the cell to medium [H]

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BexD/CtrA/VexA family [H]

Homologues:

Organism=Escherichia coli, GI1788376, Length=175, Percent_Identity=29.7142857142857, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787218, Length=185, Percent_Identity=28.6486486486486, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715
- InterPro:   IPR019554 [H]

Pfam domain/function: PF02563 Poly_export; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 22471; Mature: 22471

Theoretical pI: Translated: 4.16; Mature: 4.16

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPARAATVAGSLIVAAILSLVVGCGAPPSAPSTVDDPEIEQYVIGPGDTLNVQVWNNPE
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCC
LSISVPVRPDGQISTPLVEDVQASGVTPTELARVMEDELSLYLRDPVVTVIVTGFAGPYD
EEEEECCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHEEECCCEEEEEEECCCCCCC
RQVRVIGQATEPRALQYREDMSVMDVMIEVGGMTDVAAGNRTVLVRHEDGERNQYRVRLH
CEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEEEECCCCCCEEEEEEH
DLINRGEIEANIDIKPGDVLIIPERFF
HHHCCCCEEEEEEECCCCEEEECCCCC
>Mature Secondary Structure
MEPARAATVAGSLIVAAILSLVVGCGAPPSAPSTVDDPEIEQYVIGPGDTLNVQVWNNPE
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCC
LSISVPVRPDGQISTPLVEDVQASGVTPTELARVMEDELSLYLRDPVVTVIVTGFAGPYD
EEEEECCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHEEECCCEEEEEEECCCCCCC
RQVRVIGQATEPRALQYREDMSVMDVMIEVGGMTDVAAGNRTVLVRHEDGERNQYRVRLH
CEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEEEECCCCCCEEEEEEH
DLINRGEIEANIDIKPGDVLIIPERFF
HHHCCCCEEEEEEECCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]