Click here to switch to the map view.

The map label for this gene is 121998303

Identifier: 121998303

GI number: 121998303

Start: 1648674

End: 1650218

Strand: Reverse

Name: 121998303

Synonym: Hhal_1521

Alternate gene names: NA

Gene position: 1650218-1648674 (Counterclockwise)

Preceding gene: 121998308

Following gene: 121998302

Centisome position: 61.61

GC content: 63.95

Gene sequence:

>1545_bases
ATGGGGCAGATGGAGCAGGTCGTCCAGGAAGTGCTGCACCAACTGCGAGCGACCTGGCGTCGACGGTGGTGGATCCTTCC
CATCGCTTGGCTGGTCTGTATACCCGGGTGGGCGTACATCCACGCCCTCCCCGACACCTACGAGGCGTCGAGCGAGGTCT
ACGTCGATACGGATTCGGTGCTCGGTCCACTGCTCGGCGGCATGACGGTGCGACCGGACGCTGAGCAGCGGATGAACATG
ATTACCAGCACGCTGCTGAGCCGGGATAACCTGCGTGAGATCGCGCGGCAGGCGGACCTCGACATTCTCCTCGGCTACGA
CGACATCGACCGCGCCGTCGATAGCCTGCAGGACATCGATCTGCGCGGGGGTGACGAAAGTGGGGCTGGGGACAATATCT
ATACGATCAGTTTTTCCGATGAGGACCCGGAGGTGGCCTATCGCGTGGTGCGTCAGACCGGTGACCTCTTCATGGAGCGG
GGCCTCGGTGACCCGCGGACGGATCTGACGGCCTCGCGCGATTTTATCGAGAATCAGCTCGACCGTTACGGCACTCGGCT
GCGGGCGAAGGAAGAGCAGCTTGAGGATTTTCGCCGTGAGCACTCGGAGGTTCTGTTGGCCGGCGGCGATTTTTATAGCC
GCTTGCGGGCCGAGCGTGAGCGGTTAGCTGAGGCGGAGTTGGAGTTTGAGCAGGCTCAAAGCCATTATGAGAGCCTCATC
GCACAGCTTGAGGGCGATGGCGATCACCCCGGATTAGTGCAGCCTCCGGAGTTCGAGAATCCGGAGCTAGACGCTCGCAT
CAGTAACCTGGAATCCGAGCTTGATGAGCTGCGCCGCCAGTATACCGATCAGCATCCGGACGTGGCGCATACGCAGCGCG
TCCTTGAGGATCTGCGCGAGGAGCGGGAGGAGCAGGCGGTGGAGTTCAGCGAGAGCCTGATGGCCTCCCCGGTAGATCGC
GTTGGTCTAGGTCAGCCCGATCATCCGCTGCAGCTGGAGTTGGCCGAATCGGAAAGCCGTGTGGCCTCGCTGGAGACTCG
GGTTGAGGAGCAGCGCCTGCGGGTCCAGGAACTTGAGGCGGTCTCCGACGACGTGCCGGAGATCGAGTCGGAATACAGTC
GGCTCACACGGGACTACGAAGTCCTGCAGAACAGCTACTCTGAGTTACGGGATCGGCTTGAGCAGGCTGTGCTGACCGGC
GAAGTGGAGTCAGGCGCGGACTCGGTGGACTTTCGCGTCCTGCAGCCACCGGAGCAGCCAAGTGAGGCGGCAGCGCCGAA
CCGCCCCCTGCTGGGCAGCGCGGTTCTGGTCCTGGGGCTGGGGGCCGGCACGGGATTCGCCTTCCTGCTGGCCCAGATTC
GCGGCACGGTGGCCGCGCCCGGCCAGCTCGGCGAGCTCACCGGGCGGCCCGTCATGGGGCAGATCTCGCGGGTGCGAACG
CCGGCCCACCGGCGCCGCAGGCGCATGGAGATGCTCGTCTTCTTCAGCGCAACCGGAGCCTTGTTGGTTGCCTATGGGGT
GGTGGTTGGGGTCTTTTTTGCCTAG

Upstream 100 bases:

>100_bases
GTTTTGTAAAGGGTTACGAACCGAACTTGCGGACTCGTAGGACACTGCTAGCCTTGCCCCAGAGTGGTTCCGGCACGAAA
GCTGGGGGAGTCAGATACCC

Downstream 100 bases:

>100_bases
TCGGACGAGGGGCGTATGAGCATTATCGAGCGGGCGCTGGAGAAGCGCCGAGGCAACCAGGCACCCGGTGCACAAGCGCA
AGGTTCGGTCCAGGGGGCCG

Product: lipopolysaccharide biosynthesis

Products: NA

Alternate protein names: Polysaccharide Chain Length Determinant Protein; Chain Length Determinant Protein; Chain Length Determinant Family Protein; Lipopolysaccharide Biosynthesis Protein; PEP-CTERM Locus Polysaccharide Chain Length Determinant

Number of amino acids: Translated: 514; Mature: 513

Protein sequence:

>514_residues
MGQMEQVVQEVLHQLRATWRRRWWILPIAWLVCIPGWAYIHALPDTYEASSEVYVDTDSVLGPLLGGMTVRPDAEQRMNM
ITSTLLSRDNLREIARQADLDILLGYDDIDRAVDSLQDIDLRGGDESGAGDNIYTISFSDEDPEVAYRVVRQTGDLFMER
GLGDPRTDLTASRDFIENQLDRYGTRLRAKEEQLEDFRREHSEVLLAGGDFYSRLRAERERLAEAELEFEQAQSHYESLI
AQLEGDGDHPGLVQPPEFENPELDARISNLESELDELRRQYTDQHPDVAHTQRVLEDLREEREEQAVEFSESLMASPVDR
VGLGQPDHPLQLELAESESRVASLETRVEEQRLRVQELEAVSDDVPEIESEYSRLTRDYEVLQNSYSELRDRLEQAVLTG
EVESGADSVDFRVLQPPEQPSEAAAPNRPLLGSAVLVLGLGAGTGFAFLLAQIRGTVAAPGQLGELTGRPVMGQISRVRT
PAHRRRRRMEMLVFFSATGALLVAYGVVVGVFFA

Sequences:

>Translated_514_residues
MGQMEQVVQEVLHQLRATWRRRWWILPIAWLVCIPGWAYIHALPDTYEASSEVYVDTDSVLGPLLGGMTVRPDAEQRMNM
ITSTLLSRDNLREIARQADLDILLGYDDIDRAVDSLQDIDLRGGDESGAGDNIYTISFSDEDPEVAYRVVRQTGDLFMER
GLGDPRTDLTASRDFIENQLDRYGTRLRAKEEQLEDFRREHSEVLLAGGDFYSRLRAERERLAEAELEFEQAQSHYESLI
AQLEGDGDHPGLVQPPEFENPELDARISNLESELDELRRQYTDQHPDVAHTQRVLEDLREEREEQAVEFSESLMASPVDR
VGLGQPDHPLQLELAESESRVASLETRVEEQRLRVQELEAVSDDVPEIESEYSRLTRDYEVLQNSYSELRDRLEQAVLTG
EVESGADSVDFRVLQPPEQPSEAAAPNRPLLGSAVLVLGLGAGTGFAFLLAQIRGTVAAPGQLGELTGRPVMGQISRVRT
PAHRRRRRMEMLVFFSATGALLVAYGVVVGVFFA
>Mature_513_residues
GQMEQVVQEVLHQLRATWRRRWWILPIAWLVCIPGWAYIHALPDTYEASSEVYVDTDSVLGPLLGGMTVRPDAEQRMNMI
TSTLLSRDNLREIARQADLDILLGYDDIDRAVDSLQDIDLRGGDESGAGDNIYTISFSDEDPEVAYRVVRQTGDLFMERG
LGDPRTDLTASRDFIENQLDRYGTRLRAKEEQLEDFRREHSEVLLAGGDFYSRLRAERERLAEAELEFEQAQSHYESLIA
QLEGDGDHPGLVQPPEFENPELDARISNLESELDELRRQYTDQHPDVAHTQRVLEDLREEREEQAVEFSESLMASPVDRV
GLGQPDHPLQLELAESESRVASLETRVEEQRLRVQELEAVSDDVPEIESEYSRLTRDYEVLQNSYSELRDRLEQAVLTGE
VESGADSVDFRVLQPPEQPSEAAAPNRPLLGSAVLVLGLGAGTGFAFLLAQIRGTVAAPGQLGELTGRPVMGQISRVRTP
AHRRRRRMEMLVFFSATGALLVAYGVVVGVFFA

Specific function: Unknown

COG id: COG3206

COG function: function code M; Uncharacterized protein involved in exopolysaccharide biosynthesis

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57933; Mature: 57802

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQMEQVVQEVLHQLRATWRRRWWILPIAWLVCIPGWAYIHALPDTYEASSEVYVDTDSV
CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHEEECCCCCCCCCCEEEECHHH
LGPLLGGMTVRPDAEQRMNMITSTLLSRDNLREIARQADLDILLGYDDIDRAVDSLQDID
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCC
LRGGDESGAGDNIYTISFSDEDPEVAYRVVRQTGDLFMERGLGDPRTDLTASRDFIENQL
CCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
DRYGTRLRAKEEQLEDFRREHSEVLLAGGDFYSRLRAERERLAEAELEFEQAQSHYESLI
HHHHHHHHHHHHHHHHHHHHHHCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQLEGDGDHPGLVQPPEFENPELDARISNLESELDELRRQYTDQHPDVAHTQRVLEDLRE
HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
EREEQAVEFSESLMASPVDRVGLGQPDHPLQLELAESESRVASLETRVEEQRLRVQELEA
HHHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
VSDDVPEIESEYSRLTRDYEVLQNSYSELRDRLEQAVLTGEVESGADSVDFRVLQPPEQP
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCC
SEAAAPNRPLLGSAVLVLGLGAGTGFAFLLAQIRGTVAAPGQLGELTGRPVMGQISRVRT
CCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHCC
PAHRRRRRMEMLVFFSATGALLVAYGVVVGVFFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GQMEQVVQEVLHQLRATWRRRWWILPIAWLVCIPGWAYIHALPDTYEASSEVYVDTDSV
CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHEEECCCCCCCCCCEEEECHHH
LGPLLGGMTVRPDAEQRMNMITSTLLSRDNLREIARQADLDILLGYDDIDRAVDSLQDID
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCC
LRGGDESGAGDNIYTISFSDEDPEVAYRVVRQTGDLFMERGLGDPRTDLTASRDFIENQL
CCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
DRYGTRLRAKEEQLEDFRREHSEVLLAGGDFYSRLRAERERLAEAELEFEQAQSHYESLI
HHHHHHHHHHHHHHHHHHHHHHCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQLEGDGDHPGLVQPPEFENPELDARISNLESELDELRRQYTDQHPDVAHTQRVLEDLRE
HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
EREEQAVEFSESLMASPVDRVGLGQPDHPLQLELAESESRVASLETRVEEQRLRVQELEA
HHHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
VSDDVPEIESEYSRLTRDYEVLQNSYSELRDRLEQAVLTGEVESGADSVDFRVLQPPEQP
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCC
SEAAAPNRPLLGSAVLVLGLGAGTGFAFLLAQIRGTVAAPGQLGELTGRPVMGQISRVRT
CCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHCC
PAHRRRRRMEMLVFFSATGALLVAYGVVVGVFFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA