| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
Click here to switch to the map view.
The map label for this gene is 121998298
Identifier: 121998298
GI number: 121998298
Start: 1643036
End: 1644067
Strand: Reverse
Name: 121998298
Synonym: Hhal_1516
Alternate gene names: NA
Gene position: 1644067-1643036 (Counterclockwise)
Preceding gene: 121998299
Following gene: 121998297
Centisome position: 61.38
GC content: 63.95
Gene sequence:
>1032_bases ATGGATCTACGCGTAGCGAGACTGGAAGCGGCGGACGAGGCCCGCTGGGACGCTTTCGTTCAGCAGTCGCCGGAGGCCAC CTTTTTCCACCGCAGCGGCTGGGCGCGGGTCCTGCGCGAGGCGTTCGGTCACGTAACGGAGTATCTCTACGCCGAGCGTG ACGGGGTGATCGTGGGGGTGCTTCCGCTGGCACGCAGCAAGAGCTGGTTGTTCAGCGATGCCCTGATTTCCACCCCCTTC TGCGTCTATGGCGGGGTGGTCGCTGCCGATGAATCGGCGCGGAAGGCGCTCGACCATGCGGCTCAGGAGCGTGCCCGGGC GCTGGGTGTAGAGTTTCTGGAGTATCGCCACCGCGCGCCGGTGCATACGGAGTGGCCGCGCCAGGATGCGTTGTACGCCA CCTTCCGGAAATCCCTGGCGGCTGACGAGGACGCGAACTTCCAAGCCATCCCGCGCAAGCAGCGGCGAATGGTGCGCCAG GGGATCAAGGCCGGTTTGGAAGCGACCTGGGAGGCCGATCTCGACCGCTTTCACGACCTCTATGCGCGAAGTGTCCACCG TCTGGGTACGCCGGTCTTTCCACGCTGTTACTTCCACCTACTGGCGGAGACCTTCGGTGACGACTGCCGCGTACTGATGG TGTCCCACGACGGGAAGCCGGTTACGAGTGTCCTGACGTTCTATTTCCGGGATGAGATTCTGCCCTATTACGGCGGCGGA TTGCCTGCGGCGCGCGAGGTGGCGGGCTACGATTTCCTCTACTGGGAGTTGATGCGCCGGGGGTGTGAGGAGGGGTACCG GCTGTTTGATTTCGGGCGGAGCAAGAAGGGGACCGGTGCCTACCACTTCAAGCGCAACTGGGGGTTCGAGCCGCAGCCGC TGGCCTACGAATACCAGCTCTACAAGCGCAGCACGATCCCCGAGCACAATCCGCTCAATCCGCGGTACCGGCAAGCAATC CGCATCTGGCAGCGGTTGCCGCTTTCGGTGGTGAATCGATTGGGACCCATCGTGGTCCGGGGTCTGGGGTAG
Upstream 100 bases:
>100_bases CGGTGTCAGCGACTGGCAGGCCGGGCAGGCGGTTTCAGCCCAGGCATTCTGAAAGTTAGCCGCTTTGGAGCGCCAGCAGA CAGGGAGAAGCGGTACAGGA
Downstream 100 bases:
>100_bases GAGGGAGCGTGGCCGAGATCCTGTTCCTGGTGCATCGCGTGCCGTGGCCGCCGAACAAGGGCGATAAGATCCGCTCTTAC CATATCCTCCGTCACTTGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 343; Mature: 343
Protein sequence:
>343_residues MDLRVARLEAADEARWDAFVQQSPEATFFHRSGWARVLREAFGHVTEYLYAERDGVIVGVLPLARSKSWLFSDALISTPF CVYGGVVAADESARKALDHAAQERARALGVEFLEYRHRAPVHTEWPRQDALYATFRKSLAADEDANFQAIPRKQRRMVRQ GIKAGLEATWEADLDRFHDLYARSVHRLGTPVFPRCYFHLLAETFGDDCRVLMVSHDGKPVTSVLTFYFRDEILPYYGGG LPAAREVAGYDFLYWELMRRGCEEGYRLFDFGRSKKGTGAYHFKRNWGFEPQPLAYEYQLYKRSTIPEHNPLNPRYRQAI RIWQRLPLSVVNRLGPIVVRGLG
Sequences:
>Translated_343_residues MDLRVARLEAADEARWDAFVQQSPEATFFHRSGWARVLREAFGHVTEYLYAERDGVIVGVLPLARSKSWLFSDALISTPF CVYGGVVAADESARKALDHAAQERARALGVEFLEYRHRAPVHTEWPRQDALYATFRKSLAADEDANFQAIPRKQRRMVRQ GIKAGLEATWEADLDRFHDLYARSVHRLGTPVFPRCYFHLLAETFGDDCRVLMVSHDGKPVTSVLTFYFRDEILPYYGGG LPAAREVAGYDFLYWELMRRGCEEGYRLFDFGRSKKGTGAYHFKRNWGFEPQPLAYEYQLYKRSTIPEHNPLNPRYRQAI RIWQRLPLSVVNRLGPIVVRGLG >Mature_343_residues MDLRVARLEAADEARWDAFVQQSPEATFFHRSGWARVLREAFGHVTEYLYAERDGVIVGVLPLARSKSWLFSDALISTPF CVYGGVVAADESARKALDHAAQERARALGVEFLEYRHRAPVHTEWPRQDALYATFRKSLAADEDANFQAIPRKQRRMVRQ GIKAGLEATWEADLDRFHDLYARSVHRLGTPVFPRCYFHLLAETFGDDCRVLMVSHDGKPVTSVLTFYFRDEILPYYGGG LPAAREVAGYDFLYWELMRRGCEEGYRLFDFGRSKKGTGAYHFKRNWGFEPQPLAYEYQLYKRSTIPEHNPLNPRYRQAI RIWQRLPLSVVNRLGPIVVRGLG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39556; Mature: 39556
Theoretical pI: Translated: 9.14; Mature: 9.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLRVARLEAADEARWDAFVQQSPEATFFHRSGWARVLREAFGHVTEYLYAERDGVIVGV CCCEEHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE LPLARSKSWLFSDALISTPFCVYGGVVAADESARKALDHAAQERARALGVEFLEYRHRAP ECCCCCCCHHHHHHHHHCCHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC VHTEWPRQDALYATFRKSLAADEDANFQAIPRKQRRMVRQGIKAGLEATWEADLDRFHDL CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH YARSVHRLGTPVFPRCYFHLLAETFGDDCRVLMVSHDGKPVTSVLTFYFRDEILPYYGGG HHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHCCHHCCCC LPAAREVAGYDFLYWELMRRGCEEGYRLFDFGRSKKGTGAYHFKRNWGFEPQPLAYEYQL CCHHHHHHCCHHHHHHHHHHHHHHCCEEHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHH YKRSTIPEHNPLNPRYRQAIRIWQRLPLSVVNRLGPIVVRGLG HHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCCEEECCC >Mature Secondary Structure MDLRVARLEAADEARWDAFVQQSPEATFFHRSGWARVLREAFGHVTEYLYAERDGVIVGV CCCEEHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE LPLARSKSWLFSDALISTPFCVYGGVVAADESARKALDHAAQERARALGVEFLEYRHRAP ECCCCCCCHHHHHHHHHCCHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC VHTEWPRQDALYATFRKSLAADEDANFQAIPRKQRRMVRQGIKAGLEATWEADLDRFHDL CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH YARSVHRLGTPVFPRCYFHLLAETFGDDCRVLMVSHDGKPVTSVLTFYFRDEILPYYGGG HHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHCCHHCCCC LPAAREVAGYDFLYWELMRRGCEEGYRLFDFGRSKKGTGAYHFKRNWGFEPQPLAYEYQL CCHHHHHHCCHHHHHHHHHHHHHHCCEEHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHH YKRSTIPEHNPLNPRYRQAIRIWQRLPLSVVNRLGPIVVRGLG HHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA