| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998290
Identifier: 121998290
GI number: 121998290
Start: 1631518
End: 1633263
Strand: Reverse
Name: 121998290
Synonym: Hhal_1508
Alternate gene names: NA
Gene position: 1633263-1631518 (Counterclockwise)
Preceding gene: 121998291
Following gene: 121998283
Centisome position: 60.98
GC content: 70.16
Gene sequence:
>1746_bases GTGCCGGTGATCGAGCGGGCTTGGCTGGAGCCTTGGGTTGGCGGTCTGGCTGCCTATCTGGAGCCGGACGGCCGGTTGCG CGAGCCGGACACCCTGGACGGCTGGACACCGACCGATCATTATGCGCCGATCTTCGCCGCACTCGCACTACACGTGCACC CGCAGTTCGGGGATTGGCGGCGGCCGCTGGATGCCTGGACGGCGCTACCGGTTGCGCAGCGCGGCCACGAGCCCTTCAAT CGCCTTGGGCTTCGGCTGCTGGAGAGTCGGCTTGAGCGCGAAGGCGCGCAGCAGGCCGATCGGGATCGCGTACGCCGCGC GCTTCGCGGATGCCGCTTGCGCAGGCGCTATCCGTCGAACAACTGGACCCTGCTCGCCGCTACGGTTCGCCTCCTTGAGG CGGAGACGCCGTTTCTTCGTCAACGCCGCGCGGAACGGTTGGCTGCCCTGACCGAGCGCTGGATGACCTCGGCCGGGGGC TTCGTGGATTTTCCGGCTGGGAGCGGTGGTCGGGTTGCGACCCCGGTGGCCTACCATGTGAAAGCGCTGCTCTGCCTCTG GCTGGCGGTGTGCCGGGTCGATCACCCGCGGCTCCGCGCCCTGCTCGAGCGCGGATGGTCCTGGCTGGATCTGGTAGCGA CGCGAGGGGGGTATTGCGGTGGCCTCGGACGGAGCAATCACGCCCTCTTCGGGGACGCCTGCCTGATGGCGGTGCTCGGC GGCGTTTTGTCGTCCGGCGGCGATGGCCTGGAGAGGGGCCACTCCGGGGTGGTGCTGCTCGAAGCCCTGCGCCAGCGTCT GGAGCGCCAAAGGCGGGAGGATGGACTTCTGTGGCTGACGCCGGCGTGTCGCAGCGGCGCTGAAGGGGGGTGGGACCGGT ATATGCACTTGAGCGTCTACAACGCTTGGACGGCCGGCTTACTCAGCCTGGTGGCCGACGGCGATGAGGCGCTGGTCGCC GGTCGCGCACCGGTGTGCGAGTTCAATCTCGGTGGTTCGGCAGAGCGAGCGCCCCGGGAAGACCGGGCGGCGGGGCTTCT GCGGGCCGATGGCGATGACTGGACCGTCTGTGTGAACCTCAAGGGTCAGGCGGTGCAGGGCTATAGCCGGGGCGAAGGGG ATCTGCGATCGGCGGCGGGGCAGGCCTTTCACCTGGAGGTAGCGGGGCAGCCGGTCCTTCCAAGCGCGACGCGGCGCCCT CGATCCGACTGGCTGGCCGAGCCGCGGCAGGCCGGGTGGGTGCCGCTGGTGCTCGATGGGGGCGAGCTGTACGGTCCCCT GCTTTTTGAACGCACCGGGTGGGCATCGACGGCTGTGGGGCTGCGTTGGTGGGGCGAGGGTGCCCCCGTAGCGCTGTGCC GGCCGCGCGCCGGCTCCTGGAGGGAACGGATCCGGGACGCCATCGATTGGCGGCTCCTCGGTGGTGCCTGGCAGCGGCGC CAGGGCGCCTCACCGCCTCGTCTGGCGGGTCACAGCTGGCGCGTGGAGATGGTCTGGGATGGGGACAACCGTCACCTGAT TGCGCGTTGGACCTTGTTGGGCCAGCCGGACTCAGGTGCACGGGTGTTGAACCCGGGGGGCTGGTCCTTGACGCCGTGCC CCTCGGCGTCTGCTCCGTTAGACGGAGAGGCGGCGGGGGGCGAGGCCCATTGCAGTCTGGGTCGCGCCGTGGCCGGCTGC GATCCTGAGCCCCTGCGCTGGCCGGCCCGCGATTACAGCTGGCAGATCGTCCGCACCCTGGCCTAG
Upstream 100 bases:
>100_bases GGCAGACCCGGATCCCCTCCTTGGTGGACAAGCTCGAGGCCGCCGCTGACGGCGCCGGGCAGGGTGCGCGTCGGCCTGCC GGCGGGGGCGGGGAGGGTCC
Downstream 100 bases:
>100_bases AACGGCCACAACCCCCCGCCGCCGTAGTACGCCAACACCATCAGATAGGCCACAAAGAGGGTTCCGAGGATCCCTGCAAA GATCATGAGCTCGAGCCGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 581; Mature: 580
Protein sequence:
>581_residues MPVIERAWLEPWVGGLAAYLEPDGRLREPDTLDGWTPTDHYAPIFAALALHVHPQFGDWRRPLDAWTALPVAQRGHEPFN RLGLRLLESRLEREGAQQADRDRVRRALRGCRLRRRYPSNNWTLLAATVRLLEAETPFLRQRRAERLAALTERWMTSAGG FVDFPAGSGGRVATPVAYHVKALLCLWLAVCRVDHPRLRALLERGWSWLDLVATRGGYCGGLGRSNHALFGDACLMAVLG GVLSSGGDGLERGHSGVVLLEALRQRLERQRREDGLLWLTPACRSGAEGGWDRYMHLSVYNAWTAGLLSLVADGDEALVA GRAPVCEFNLGGSAERAPREDRAAGLLRADGDDWTVCVNLKGQAVQGYSRGEGDLRSAAGQAFHLEVAGQPVLPSATRRP RSDWLAEPRQAGWVPLVLDGGELYGPLLFERTGWASTAVGLRWWGEGAPVALCRPRAGSWRERIRDAIDWRLLGGAWQRR QGASPPRLAGHSWRVEMVWDGDNRHLIARWTLLGQPDSGARVLNPGGWSLTPCPSASAPLDGEAAGGEAHCSLGRAVAGC DPEPLRWPARDYSWQIVRTLA
Sequences:
>Translated_581_residues MPVIERAWLEPWVGGLAAYLEPDGRLREPDTLDGWTPTDHYAPIFAALALHVHPQFGDWRRPLDAWTALPVAQRGHEPFN RLGLRLLESRLEREGAQQADRDRVRRALRGCRLRRRYPSNNWTLLAATVRLLEAETPFLRQRRAERLAALTERWMTSAGG FVDFPAGSGGRVATPVAYHVKALLCLWLAVCRVDHPRLRALLERGWSWLDLVATRGGYCGGLGRSNHALFGDACLMAVLG GVLSSGGDGLERGHSGVVLLEALRQRLERQRREDGLLWLTPACRSGAEGGWDRYMHLSVYNAWTAGLLSLVADGDEALVA GRAPVCEFNLGGSAERAPREDRAAGLLRADGDDWTVCVNLKGQAVQGYSRGEGDLRSAAGQAFHLEVAGQPVLPSATRRP RSDWLAEPRQAGWVPLVLDGGELYGPLLFERTGWASTAVGLRWWGEGAPVALCRPRAGSWRERIRDAIDWRLLGGAWQRR QGASPPRLAGHSWRVEMVWDGDNRHLIARWTLLGQPDSGARVLNPGGWSLTPCPSASAPLDGEAAGGEAHCSLGRAVAGC DPEPLRWPARDYSWQIVRTLA >Mature_580_residues PVIERAWLEPWVGGLAAYLEPDGRLREPDTLDGWTPTDHYAPIFAALALHVHPQFGDWRRPLDAWTALPVAQRGHEPFNR LGLRLLESRLEREGAQQADRDRVRRALRGCRLRRRYPSNNWTLLAATVRLLEAETPFLRQRRAERLAALTERWMTSAGGF VDFPAGSGGRVATPVAYHVKALLCLWLAVCRVDHPRLRALLERGWSWLDLVATRGGYCGGLGRSNHALFGDACLMAVLGG VLSSGGDGLERGHSGVVLLEALRQRLERQRREDGLLWLTPACRSGAEGGWDRYMHLSVYNAWTAGLLSLVADGDEALVAG RAPVCEFNLGGSAERAPREDRAAGLLRADGDDWTVCVNLKGQAVQGYSRGEGDLRSAAGQAFHLEVAGQPVLPSATRRPR SDWLAEPRQAGWVPLVLDGGELYGPLLFERTGWASTAVGLRWWGEGAPVALCRPRAGSWRERIRDAIDWRLLGGAWQRRQ GASPPRLAGHSWRVEMVWDGDNRHLIARWTLLGQPDSGARVLNPGGWSLTPCPSASAPLDGEAAGGEAHCSLGRAVAGCD PEPLRWPARDYSWQIVRTLA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63951; Mature: 63820
Theoretical pI: Translated: 8.55; Mature: 8.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVIERAWLEPWVGGLAAYLEPDGRLREPDTLDGWTPTDHYAPIFAALALHVHPQFGDWR CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC RPLDAWTALPVAQRGHEPFNRLGLRLLESRLEREGAQQADRDRVRRALRGCRLRRRYPSN CCHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC NWTLLAATVRLLEAETPFLRQRRAERLAALTERWMTSAGGFVDFPAGSGGRVATPVAYHV CCEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHH KALLCLWLAVCRVDHPRLRALLERGWSWLDLVATRGGYCGGLGRSNHALFGDACLMAVLG HHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH GVLSSGGDGLERGHSGVVLLEALRQRLERQRREDGLLWLTPACRSGAEGGWDRYMHLSVY HHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHCCEEEEEHHHCCCCCCCCHHEEEEEEH NAWTAGLLSLVADGDEALVAGRAPVCEFNLGGSAERAPREDRAAGLLRADGDDWTVCVNL HHHHHHHHHHHCCCCCEEEECCCCEEEECCCCCCCCCCCHHHHCCCEEECCCCEEEEEEC KGQAVQGYSRGEGDLRSAAGQAFHLEVAGQPVLPSATRRPRSDWLAEPRQAGWVPLVLDG CCCEECCCCCCCCHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHCCHHHCCCEEEEEEC GELYGPLLFERTGWASTAVGLRWWGEGAPVALCRPRAGSWRERIRDAIDWRLLGGAWQRR CCHHCCHHEECCCCCCCCCCEEEECCCCCEEEECCCCCCHHHHHHHHHCEEECCCHHHHH QGASPPRLAGHSWRVEMVWDGDNRHLIARWTLLGQPDSGARVLNPGGWSLTPCPSASAPL CCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCC DGEAAGGEAHCSLGRAVAGCDPEPLRWPARDYSWQIVRTLA CCCCCCCCHHHHHCCHHCCCCCCCCCCCCCCCCCHHHEECC >Mature Secondary Structure PVIERAWLEPWVGGLAAYLEPDGRLREPDTLDGWTPTDHYAPIFAALALHVHPQFGDWR CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC RPLDAWTALPVAQRGHEPFNRLGLRLLESRLEREGAQQADRDRVRRALRGCRLRRRYPSN CCHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC NWTLLAATVRLLEAETPFLRQRRAERLAALTERWMTSAGGFVDFPAGSGGRVATPVAYHV CCEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHH KALLCLWLAVCRVDHPRLRALLERGWSWLDLVATRGGYCGGLGRSNHALFGDACLMAVLG HHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH GVLSSGGDGLERGHSGVVLLEALRQRLERQRREDGLLWLTPACRSGAEGGWDRYMHLSVY HHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHCCEEEEEHHHCCCCCCCCHHEEEEEEH NAWTAGLLSLVADGDEALVAGRAPVCEFNLGGSAERAPREDRAAGLLRADGDDWTVCVNL HHHHHHHHHHHCCCCCEEEECCCCEEEECCCCCCCCCCCHHHHCCCEEECCCCEEEEEEC KGQAVQGYSRGEGDLRSAAGQAFHLEVAGQPVLPSATRRPRSDWLAEPRQAGWVPLVLDG CCCEECCCCCCCCHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHCCHHHCCCEEEEEEC GELYGPLLFERTGWASTAVGLRWWGEGAPVALCRPRAGSWRERIRDAIDWRLLGGAWQRR CCHHCCHHEECCCCCCCCCCEEEECCCCCEEEECCCCCCHHHHHHHHHCEEECCCHHHHH QGASPPRLAGHSWRVEMVWDGDNRHLIARWTLLGQPDSGARVLNPGGWSLTPCPSASAPL CCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCC DGEAAGGEAHCSLGRAVAGCDPEPLRWPARDYSWQIVRTLA CCCCCCCCHHHHHCCHHCCCCCCCCCCCCCCCCCHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA