| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
Click here to switch to the map view.
The map label for this gene is cdsA [H]
Identifier: 121998243
GI number: 121998243
Start: 1577582
End: 1578406
Strand: Reverse
Name: cdsA [H]
Synonym: Hhal_1461
Alternate gene names: 121998243
Gene position: 1578406-1577582 (Counterclockwise)
Preceding gene: 121998244
Following gene: 121998242
Centisome position: 58.93
GC content: 68.12
Gene sequence:
>825_bases ATGCTTAAGGCACGGGTGCTGACCGCGCTGGCGCTGGGGCCGCTGCTTCTTGCCGCAATCTGGTTGTTGCCTACCCCGGT GCTGGCGTTGGCGCTGGGGGGGGTCGCGGCCCTTGCGGCCTGGGAGTGGACCACACTGATCGGCGTACAGGATCACGGCC GCCGGGTGGCCCTGGTCGGTGGCTTTGCCATGACGCTGCTGCCCGGGTGGTGGTTGCTGCAGGCCGTTCCGGCGGTTAGC GGCATCCTCTACGCGGTGGCTGCCTTGTGGCTTGTGGCCCTGTGCTGGCTGGTGCTGTATACCCGGCGTGAGCTGGCTGC CCCATCACCGCTGGTGTCCGCCGTGGTGGGTTGGCTAGTGCTCTGGCCCTGCTGGCTGGCCCTGGTGTATCTGCACGGTA GTACCCCCTGGGGTCCCTTCTGGCACACCTTCCTGCTGGTCCTGGTCTGGGGCGCAGATACCGGTGCCTACTTCGCCGGG CGGGCCTGGGGGCGTCGCCGGCTAGCCCCATGCATCAGCCCCGGCAAGAGCTGGGAGGGGGCTGTGGGAGGCGGTCTGGC CGCGCTGCTGGGTGGCGGAGCATTGGTGCTCCTGCTTCAGCCTCAGGCCCCCGGCGTGGTGGCTCTTGCGCTGCTGACGG TGGCGGTGATCGTCGCCTCAGTGGTGGGGGATCTCTTTGAAAGTATGCTCAAGCGTCAACGCGGCGTGAAGGACAGTGGC GGAATCCTGCCGGGGCACGGCGGGATCCTTGACCGTATCGACAGTCTGACCGCGGCGGCGCCGGTTCTAGCAGCGGGGTT AGCGTGGTGGCAGAGCGGAATGTGA
Upstream 100 bases:
>100_bases GACTTCGGTACCGAGGGGTTGGCCCGCGCCATCGAAGACTATGCCGCGCGGGATCGTCGATTCGGTGCGGTCACCTCCTA TCCGCTGAAGTCGGTGCGCC
Downstream 100 bases:
>100_bases TGCGGCTGGCAGTACTCGGGGCCACGGGGTCCATTGGTACGAGCACCCTGGATGTGGCAATCAGGCACCCCGAACGTTTC GAGGTTCGGGCCGTGGCTGC
Product: phosphatidate cytidylyltransferase
Products: NA
Alternate protein names: CDP-DAG synthase; CDP-DG synthase; CDP-diacylglycerol synthase; CDS; CDP-diglyceride pyrophosphorylase; CDP-diglyceride synthase; CTP:phosphatidate cytidylyltransferase [H]
Number of amino acids: Translated: 274; Mature: 274
Protein sequence:
>274_residues MLKARVLTALALGPLLLAAIWLLPTPVLALALGGVAALAAWEWTTLIGVQDHGRRVALVGGFAMTLLPGWWLLQAVPAVS GILYAVAALWLVALCWLVLYTRRELAAPSPLVSAVVGWLVLWPCWLALVYLHGSTPWGPFWHTFLLVLVWGADTGAYFAG RAWGRRRLAPCISPGKSWEGAVGGGLAALLGGGALVLLLQPQAPGVVALALLTVAVIVASVVGDLFESMLKRQRGVKDSG GILPGHGGILDRIDSLTAAAPVLAAGLAWWQSGM
Sequences:
>Translated_274_residues MLKARVLTALALGPLLLAAIWLLPTPVLALALGGVAALAAWEWTTLIGVQDHGRRVALVGGFAMTLLPGWWLLQAVPAVS GILYAVAALWLVALCWLVLYTRRELAAPSPLVSAVVGWLVLWPCWLALVYLHGSTPWGPFWHTFLLVLVWGADTGAYFAG RAWGRRRLAPCISPGKSWEGAVGGGLAALLGGGALVLLLQPQAPGVVALALLTVAVIVASVVGDLFESMLKRQRGVKDSG GILPGHGGILDRIDSLTAAAPVLAAGLAWWQSGM >Mature_274_residues MLKARVLTALALGPLLLAAIWLLPTPVLALALGGVAALAAWEWTTLIGVQDHGRRVALVGGFAMTLLPGWWLLQAVPAVS GILYAVAALWLVALCWLVLYTRRELAAPSPLVSAVVGWLVLWPCWLALVYLHGSTPWGPFWHTFLLVLVWGADTGAYFAG RAWGRRRLAPCISPGKSWEGAVGGGLAALLGGGALVLLLQPQAPGVVALALLTVAVIVASVVGDLFESMLKRQRGVKDSG GILPGHGGILDRIDSLTAAAPVLAAGLAWWQSGM
Specific function: Phospholipid biosynthesis. [C]
COG id: COG0575
COG function: function code I; CDP-diglyceride synthetase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CDS family [H]
Homologues:
Organism=Escherichia coli, GI87081696, Length=278, Percent_Identity=39.9280575539568, Blast_Score=149, Evalue=2e-37, Organism=Escherichia coli, GI1787677, Length=111, Percent_Identity=43.2432432432432, Blast_Score=87, Evalue=9e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000374 [H]
Pfam domain/function: PF01148 CTP_transf_1 [H]
EC number: =2.7.7.41 [H]
Molecular weight: Translated: 28716; Mature: 28716
Theoretical pI: Translated: 9.94; Mature: 9.94
Prosite motif: PS01315 CDS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKARVLTALALGPLLLAAIWLLPTPVLALALGGVAALAAWEWTTLIGVQDHGRRVALVG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEC GFAMTLLPGWWLLQAVPAVSGILYAVAALWLVALCWLVLYTRRELAAPSPLVSAVVGWLV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH LWPCWLALVYLHGSTPWGPFWHTFLLVLVWGADTGAYFAGRAWGRRRLAPCISPGKSWEG HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHCCCCCCCCCCCCC AVGGGLAALLGGGALVLLLQPQAPGVVALALLTVAVIVASVVGDLFESMLKRQRGVKDSG CCCHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC GILPGHGGILDRIDSLTAAAPVLAAGLAWWQSGM CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLKARVLTALALGPLLLAAIWLLPTPVLALALGGVAALAAWEWTTLIGVQDHGRRVALVG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEC GFAMTLLPGWWLLQAVPAVSGILYAVAALWLVALCWLVLYTRRELAAPSPLVSAVVGWLV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH LWPCWLALVYLHGSTPWGPFWHTFLLVLVWGADTGAYFAGRAWGRRRLAPCISPGKSWEG HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHCCCCCCCCCCCCC AVGGGLAALLGGGALVLLLQPQAPGVVALALLTVAVIVASVVGDLFESMLKRQRGVKDSG CCCHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC GILPGHGGILDRIDSLTAAAPVLAAGLAWWQSGM CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]