| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998171
Identifier: 121998171
GI number: 121998171
Start: 1500851
End: 1501387
Strand: Reverse
Name: 121998171
Synonym: Hhal_1389
Alternate gene names: NA
Gene position: 1501387-1500851 (Counterclockwise)
Preceding gene: 121998172
Following gene: 121998170
Centisome position: 56.05
GC content: 70.2
Gene sequence:
>537_bases ATGCGAGTAGGTATCATCGCCGATACCCACGGCTTCCTCGACCCGCGCATCGCCGACCACATCGCCGAGTGTGACCTGGC GGTGCACGCTGGCGATGTGGGCGGGGCCGACGTGCTCTGCGCCATGCAGCCGCGGGAGGAGGTGATCGCCGTTCGTGGCA ACGTCGACGGACCGGAGACGTGGCCGGACCACGAGGCCCATATGCTGGAGCAGCTGCCGGCCCATTCGGTGCTGGATCTG CCCGGGGGCGAGCTGGCGGTTATCCACGGGGACGGCTACGAGCCTGCCTCGCGGCGTCACGAGCGGCTGCGTGCGGCGTT CCCCCGGGTGCGCGCCATCGCCTGCGGGCACAGCCACCAGCTGGTCGTCGACGACGCCGCCGACCCCTGGGTGCTCAACC CGGGCGCGGCGGGCCGTGTGCGGGTGAAAGACGGGCCGTCGATGCTCATCCTCACCTGTCAGGAAGATGGCTGGTCCGTC CAGGTGGTGCAGCTGCCGCCGCGCAAGTACCGGGCCATCACCAGCAACGAGGAGTAG
Upstream 100 bases:
>100_bases GTTCCCCGTTACCCACGATTACGGCGCCCTGCGCCAGGCCTTGGACCAGGCCTTCGCACGCGCCTGATCGCGACCGCCCT GCGTCAGGGAAGGGGTCTCC
Downstream 100 bases:
>100_bases TCAGCGCTCGTGGGTGGCGTACCGCGCCAGCTTCGTGAGCTGCGCCAACGTATCGAGGGCGCCTTCGGCCCGCAGCGACC GCCGCTGCGTCGGCGTCTGG
Product: phosphodiesterase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 178; Mature: 178
Protein sequence:
>178_residues MRVGIIADTHGFLDPRIADHIAECDLAVHAGDVGGADVLCAMQPREEVIAVRGNVDGPETWPDHEAHMLEQLPAHSVLDL PGGELAVIHGDGYEPASRRHERLRAAFPRVRAIACGHSHQLVVDDAADPWVLNPGAAGRVRVKDGPSMLILTCQEDGWSV QVVQLPPRKYRAITSNEE
Sequences:
>Translated_178_residues MRVGIIADTHGFLDPRIADHIAECDLAVHAGDVGGADVLCAMQPREEVIAVRGNVDGPETWPDHEAHMLEQLPAHSVLDL PGGELAVIHGDGYEPASRRHERLRAAFPRVRAIACGHSHQLVVDDAADPWVLNPGAAGRVRVKDGPSMLILTCQEDGWSV QVVQLPPRKYRAITSNEE >Mature_178_residues MRVGIIADTHGFLDPRIADHIAECDLAVHAGDVGGADVLCAMQPREEVIAVRGNVDGPETWPDHEAHMLEQLPAHSVLDL PGGELAVIHGDGYEPASRRHERLRAAFPRVRAIACGHSHQLVVDDAADPWVLNPGAAGRVRVKDGPSMLILTCQEDGWSV QVVQLPPRKYRAITSNEE
Specific function: Unknown
COG id: COG0622
COG function: function code R; Predicted phosphoesterase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the metallophosphoesterase superfamily. YfcE family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004843 - InterPro: IPR020935 - InterPro: IPR000979 [H]
Pfam domain/function: PF00149 Metallophos [H]
EC number: NA
Molecular weight: Translated: 19318; Mature: 19318
Theoretical pI: Translated: 5.23; Mature: 5.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVGIIADTHGFLDPRIADHIAECDLAVHAGDVGGADVLCAMQPREEVIAVRGNVDGPET CEEEEEECCCCCCCCHHHHHHHHCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCCCCC WPDHEAHMLEQLPAHSVLDLPGGELAVIHGDGYEPASRRHERLRAAFPRVRAIACGHSHQ CCCHHHHHHHHCCCCCEEECCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCE LVVDDAADPWVLNPGAAGRVRVKDGPSMLILTCQEDGWSVQVVQLPPRKYRAITSNEE EEEECCCCCEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEEEECCHHHEEECCCCC >Mature Secondary Structure MRVGIIADTHGFLDPRIADHIAECDLAVHAGDVGGADVLCAMQPREEVIAVRGNVDGPET CEEEEEECCCCCCCCHHHHHHHHCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCCCCC WPDHEAHMLEQLPAHSVLDLPGGELAVIHGDGYEPASRRHERLRAAFPRVRAIACGHSHQ CCCHHHHHHHHCCCCCEEECCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCE LVVDDAADPWVLNPGAAGRVRVKDGPSMLILTCQEDGWSVQVVQLPPRKYRAITSNEE EEEECCCCCEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEEEECCHHHEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]