| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998101
Identifier: 121998101
GI number: 121998101
Start: 1429751
End: 1430263
Strand: Reverse
Name: 121998101
Synonym: Hhal_1319
Alternate gene names: NA
Gene position: 1430263-1429751 (Counterclockwise)
Preceding gene: 121998102
Following gene: 121998100
Centisome position: 53.4
GC content: 66.28
Gene sequence:
>513_bases ATGAGCTTTGAAGTCATTCGCGGATACGTCAGCGAAGTGGGGAAGGCCCGGGAGGCGAAAAGCGGTCGGGGCACGGAACG CTTTAACGTGTCGGTGCGCGATACCGAGGGTCAGATCCGGAATCTGGAGTCCGTGGAGCTGTTCGGAAGCCTGGGGGAGC GGCTGAGCACCGGGGCTTCGGTGGTGCTCGTGCGGCATTGGGACCGCCGCGGCCGCGGGCGGCTGGTTGCCGGCCACGTA GACGGCGAGACGGAAGTCCACCGCTTCCCTGCTGAATTCCTGGGGGGGTGGGGCATCGGTATCTGTGCCCTGCTGCTGTC ACTCGGCGCGGTGACCACTGGCTGGCTGGGGGCCCTGCTCGCTGTAGCCCTGGCCGTGCCCACCGGCCTACCGCTGGTGC TGGTTGGTCAGCGTGAGGTGCAGGTGAAGTTCGAGACCTACCGTATCCTGCGTGAGGAGGGCCTGCTCGGCAGCGAGGAG TCGATCAGCGGCTCTCAACAGCAACGAGCGTGA
Upstream 100 bases:
>100_bases TGCGACAGGCGCTGCGTCCGGCCGGATATGACCGCATGATCCGCACGGTGCGCGGTGTGGGGTACCACCTGGATTCAAGC CGAGCCGAGAAGGAGGCAGC
Downstream 100 bases:
>100_bases TGCGCGCCTAGGCTTCTGCGTTGCTGGCCAGGGGCCATCTTGTTGCCCTCAGTTTTGCTCCGGGATCTGGGAACGTTGAT GCGATGGAGCTGATCAATCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 170; Mature: 169
Protein sequence:
>170_residues MSFEVIRGYVSEVGKAREAKSGRGTERFNVSVRDTEGQIRNLESVELFGSLGERLSTGASVVLVRHWDRRGRGRLVAGHV DGETEVHRFPAEFLGGWGIGICALLLSLGAVTTGWLGALLAVALAVPTGLPLVLVGQREVQVKFETYRILREEGLLGSEE SISGSQQQRA
Sequences:
>Translated_170_residues MSFEVIRGYVSEVGKAREAKSGRGTERFNVSVRDTEGQIRNLESVELFGSLGERLSTGASVVLVRHWDRRGRGRLVAGHV DGETEVHRFPAEFLGGWGIGICALLLSLGAVTTGWLGALLAVALAVPTGLPLVLVGQREVQVKFETYRILREEGLLGSEE SISGSQQQRA >Mature_169_residues SFEVIRGYVSEVGKAREAKSGRGTERFNVSVRDTEGQIRNLESVELFGSLGERLSTGASVVLVRHWDRRGRGRLVAGHVD GETEVHRFPAEFLGGWGIGICALLLSLGAVTTGWLGALLAVALAVPTGLPLVLVGQREVQVKFETYRILREEGLLGSEES ISGSQQQRA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18402; Mature: 18271
Theoretical pI: Translated: 7.62; Mature: 7.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFEVIRGYVSEVGKAREAKSGRGTERFNVSVRDTEGQIRNLESVELFGSLGERLSTGAS CCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHCHHHHHHHHHHHHHHCCCCE VVLVRHWDRRGRGRLVAGHVDGETEVHRFPAEFLGGWGIGICALLLSLGAVTTGWLGALL EEEEEECCCCCCCCEEEEECCCCHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH AVALAVPTGLPLVLVGQREVQVKFETYRILREEGLLGSEESISGSQQQRA HHHHHHCCCCCEEEECCCEEEEEHHHHHHHHHCCCCCCCCCCCCCHHCCC >Mature Secondary Structure SFEVIRGYVSEVGKAREAKSGRGTERFNVSVRDTEGQIRNLESVELFGSLGERLSTGAS CHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHCHHHHHHHHHHHHHHCCCCE VVLVRHWDRRGRGRLVAGHVDGETEVHRFPAEFLGGWGIGICALLLSLGAVTTGWLGALL EEEEEECCCCCCCCEEEEECCCCHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH AVALAVPTGLPLVLVGQREVQVKFETYRILREEGLLGSEESISGSQQQRA HHHHHHCCCCCEEEECCCEEEEEHHHHHHHHHCCCCCCCCCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA