| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is yjbB [H]
Identifier: 121998100
GI number: 121998100
Start: 1428063
End: 1429667
Strand: Reverse
Name: yjbB [H]
Synonym: Hhal_1318
Alternate gene names: 121998100
Gene position: 1429667-1428063 (Counterclockwise)
Preceding gene: 121998101
Following gene: 121998099
Centisome position: 53.38
GC content: 66.04
Gene sequence:
>1605_bases ATGGAGCTGATCAATCTACTGGCCGGCATCCTGCTCATCCTCTTCGGGCTGCGTTTCCTGCGCAAGGGCATTGCGCGGAC CCTGGGCGGTGATCTCCTGGACTGGCTGCAGGGGTTTACCCGTACCCGGGGGCGCGCCCTTGTCGGTGGTGTGGCCGGCG GGGCGCTGATGCCGTCGTCGACGGCTACGGCGATGCTCTCGGTACAGATGACCCGCCACGGCCGCGTGTCCTGGCGCAAC GTGCTAGCAGTGCTGCTCGGCGCACAGCTGGGCAGTACGGTGCTGGTTCAGCTTGTCTCTTTCGATCTGCAGGACTACCA GGGGCTCTTCCTGGCGGTGGGGGCGTTCCTCTTCCTGTTCCTGGAGGCCGCGCGACCGCGCGGTGTGGGTCAGACGTTGC TGGCCTTCGGCTTTATGCTGCTCGGCATGGGGTTGCTGAGCGAGGCGGCCGTGGCCATGGGGTCGGATCCGGCGGTCGAG GCGCTCTTCGAGGCTCTGGGCCAGTTACCGCTGCTGCTGATGGTCGCGGCCGTGCTGCTGACCCTGCTGGTCCAGAGCGC GACCGCCTCCATTGCGGTGGCCCTGGCTCTGGTGGCGGGTGGGCAGATTAGTCTGGAAATGCTCCTGCTCTGGGTCCTGG GCGCGAACATCGGCCTTTGCCTGACTGTGCTCATCGCGGGTTGGGGCGATGTGCAGGGACGCCGTCTGGGCCTGGCCGTG CTTATGGTCAAGCTGCCTCTGGCGGCGGCCATCGCAGCCCTGTTGTTGGCTCTGCCCGGGCCGCCGCCGGAAGGCTGGGT CGGCGGGTTGCCGCAGCAGGCTGCCTGGGTCCATACGCTGTTCAACCTGCTCGCGTGCCTGGCTGTTCTGGTAGCCCCCG CTCTGGAACGCTGGGTCAGTGCCCTGACCCCGGATCCGGAAACGCCCGAGCGGCCTGCCGTCGCCCGCCTTGATCCGTTA CTGCTGGATAACCCGACGTTGGCGATCAATGCCGCCATGCGCGAGACCCTGCGGGTGTTCGATGCCCTGCACCTGACCGG GGAGATCGTCGTGCAGGGGCTGCGCCAGTCCCATTTGCCGGCCCATGCCGCCACGGAGGTTGAGGCGCGCACTCAAGACA TCCAGCGGGTCTGTGAAGAACTGACCGAGTTTCTCGATGGCATTCCGGACGACTCCCTCAGCCCCTCGGACCAGGCGCTG AAGGACACCCTGGATGACTTCATGCGCGAACTGCCCATGATTGTTCGCACCCTGGGGCCGGACATGCACGATCAGGTCCG TCGGCTGCTCGAGCACCATGAGGAGTCCGTGGAGGCCTCACGGCCGCTGCTGCTGGAAGCCGCTTCTCGGTTCACCCAGC AGATGAATACCGTGGCCCGCATGCTCATGCGCGAGCGTCCGGAACTGGGTCGCAAGATCCTGATGCGAAAGCAGGAGACC AGCCGCTGGCTGATCGAGGCCAAGCGGCACCAGCCCGGGCTTCCTTACCCGGCCTGGGAAGTGCTTGACGGTTTTCAGCA GCTCAACCGGCGGCTCAGCGGCGTGGTCTACGTCTACTGCCATGACGAGCCGGGCATGGACGCCCTGCAAAGTGAACGAG ATTAG
Upstream 100 bases:
>100_bases AACAGCAACGAGCGTGATGCGCGCCTAGGCTTCTGCGTTGCTGGCCAGGGGCCATCTTGTTGCCCTCAGTTTTGCTCCGG GATCTGGGAACGTTGATGCG
Downstream 100 bases:
>100_bases AGTTGACCCGTACCGCGATCTTCCCCGGAACCGATCGAGCTCGCCACGCTCATCGAGACGATCGCCCACGATGCGCGCTA TGAGTTCGGTGCCGGTTCCG
Product: Na+/Pi-cotransporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 534; Mature: 534
Protein sequence:
>534_residues MELINLLAGILLILFGLRFLRKGIARTLGGDLLDWLQGFTRTRGRALVGGVAGGALMPSSTATAMLSVQMTRHGRVSWRN VLAVLLGAQLGSTVLVQLVSFDLQDYQGLFLAVGAFLFLFLEAARPRGVGQTLLAFGFMLLGMGLLSEAAVAMGSDPAVE ALFEALGQLPLLLMVAAVLLTLLVQSATASIAVALALVAGGQISLEMLLLWVLGANIGLCLTVLIAGWGDVQGRRLGLAV LMVKLPLAAAIAALLLALPGPPPEGWVGGLPQQAAWVHTLFNLLACLAVLVAPALERWVSALTPDPETPERPAVARLDPL LLDNPTLAINAAMRETLRVFDALHLTGEIVVQGLRQSHLPAHAATEVEARTQDIQRVCEELTEFLDGIPDDSLSPSDQAL KDTLDDFMRELPMIVRTLGPDMHDQVRRLLEHHEESVEASRPLLLEAASRFTQQMNTVARMLMRERPELGRKILMRKQET SRWLIEAKRHQPGLPYPAWEVLDGFQQLNRRLSGVVYVYCHDEPGMDALQSERD
Sequences:
>Translated_534_residues MELINLLAGILLILFGLRFLRKGIARTLGGDLLDWLQGFTRTRGRALVGGVAGGALMPSSTATAMLSVQMTRHGRVSWRN VLAVLLGAQLGSTVLVQLVSFDLQDYQGLFLAVGAFLFLFLEAARPRGVGQTLLAFGFMLLGMGLLSEAAVAMGSDPAVE ALFEALGQLPLLLMVAAVLLTLLVQSATASIAVALALVAGGQISLEMLLLWVLGANIGLCLTVLIAGWGDVQGRRLGLAV LMVKLPLAAAIAALLLALPGPPPEGWVGGLPQQAAWVHTLFNLLACLAVLVAPALERWVSALTPDPETPERPAVARLDPL LLDNPTLAINAAMRETLRVFDALHLTGEIVVQGLRQSHLPAHAATEVEARTQDIQRVCEELTEFLDGIPDDSLSPSDQAL KDTLDDFMRELPMIVRTLGPDMHDQVRRLLEHHEESVEASRPLLLEAASRFTQQMNTVARMLMRERPELGRKILMRKQET SRWLIEAKRHQPGLPYPAWEVLDGFQQLNRRLSGVVYVYCHDEPGMDALQSERD >Mature_534_residues MELINLLAGILLILFGLRFLRKGIARTLGGDLLDWLQGFTRTRGRALVGGVAGGALMPSSTATAMLSVQMTRHGRVSWRN VLAVLLGAQLGSTVLVQLVSFDLQDYQGLFLAVGAFLFLFLEAARPRGVGQTLLAFGFMLLGMGLLSEAAVAMGSDPAVE ALFEALGQLPLLLMVAAVLLTLLVQSATASIAVALALVAGGQISLEMLLLWVLGANIGLCLTVLIAGWGDVQGRRLGLAV LMVKLPLAAAIAALLLALPGPPPEGWVGGLPQQAAWVHTLFNLLACLAVLVAPALERWVSALTPDPETPERPAVARLDPL LLDNPTLAINAAMRETLRVFDALHLTGEIVVQGLRQSHLPAHAATEVEARTQDIQRVCEELTEFLDGIPDDSLSPSDQAL KDTLDDFMRELPMIVRTLGPDMHDQVRRLLEHHEESVEASRPLLLEAASRFTQQMNTVARMLMRERPELGRKILMRKQET SRWLIEAKRHQPGLPYPAWEVLDGFQQLNRRLSGVVYVYCHDEPGMDALQSERD
Specific function: Unknown
COG id: COG1283
COG function: function code P; Na+/phosphate symporter
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: To B.subtilis yqeW [H]
Homologues:
Organism=Escherichia coli, GI1790451, Length=409, Percent_Identity=26.4058679706601, Blast_Score=111, Evalue=1e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003841 - InterPro: IPR004633 [H]
Pfam domain/function: PF02690 Na_Pi_cotrans [H]
EC number: NA
Molecular weight: Translated: 58037; Mature: 58037
Theoretical pI: Translated: 5.47; Mature: 5.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELINLLAGILLILFGLRFLRKGIARTLGGDLLDWLQGFTRTRGRALVGGVAGGALMPSS CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCC TATAMLSVQMTRHGRVSWRNVLAVLLGAQLGSTVLVQLVSFDLQDYQGLFLAVGAFLFLF HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LEAARPRGVGQTLLAFGFMLLGMGLLSEAAVAMGSDPAVEALFEALGQLPLLLMVAAVLL HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHH TLLVQSATASIAVALALVAGGQISLEMLLLWVLGANIGLCLTVLIAGWGDVQGRRLGLAV HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHH LMVKLPLAAAIAALLLALPGPPPEGWVGGLPQQAAWVHTLFNLLACLAVLVAPALERWVS HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALTPDPETPERPAVARLDPLLLDNPTLAINAAMRETLRVFDALHLTGEIVVQGLRQSHLP HCCCCCCCCCCCCHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC AHAATEVEARTQDIQRVCEELTEFLDGIPDDSLSPSDQALKDTLDDFMRELPMIVRTLGP CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC DMHDQVRRLLEHHEESVEASRPLLLEAASRFTQQMNTVARMLMRERPELGRKILMRKQET CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH SRWLIEAKRHQPGLPYPAWEVLDGFQQLNRRLSGVVYVYCHDEPGMDALQSERD HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHCCCCC >Mature Secondary Structure MELINLLAGILLILFGLRFLRKGIARTLGGDLLDWLQGFTRTRGRALVGGVAGGALMPSS CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCC TATAMLSVQMTRHGRVSWRNVLAVLLGAQLGSTVLVQLVSFDLQDYQGLFLAVGAFLFLF HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LEAARPRGVGQTLLAFGFMLLGMGLLSEAAVAMGSDPAVEALFEALGQLPLLLMVAAVLL HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHH TLLVQSATASIAVALALVAGGQISLEMLLLWVLGANIGLCLTVLIAGWGDVQGRRLGLAV HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHH LMVKLPLAAAIAALLLALPGPPPEGWVGGLPQQAAWVHTLFNLLACLAVLVAPALERWVS HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALTPDPETPERPAVARLDPLLLDNPTLAINAAMRETLRVFDALHLTGEIVVQGLRQSHLP HCCCCCCCCCCCCHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC AHAATEVEARTQDIQRVCEELTEFLDGIPDDSLSPSDQALKDTLDDFMRELPMIVRTLGP CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC DMHDQVRRLLEHHEESVEASRPLLLEAASRFTQQMNTVARMLMRERPELGRKILMRKQET CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH SRWLIEAKRHQPGLPYPAWEVLDGFQQLNRRLSGVVYVYCHDEPGMDALQSERD HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]