Definition Halorhodospira halophila SL1 chromosome, complete genome.
Accession NC_008789
Length 2,678,452

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The map label for this gene is yjbB [H]

Identifier: 121998100

GI number: 121998100

Start: 1428063

End: 1429667

Strand: Reverse

Name: yjbB [H]

Synonym: Hhal_1318

Alternate gene names: 121998100

Gene position: 1429667-1428063 (Counterclockwise)

Preceding gene: 121998101

Following gene: 121998099

Centisome position: 53.38

GC content: 66.04

Gene sequence:

>1605_bases
ATGGAGCTGATCAATCTACTGGCCGGCATCCTGCTCATCCTCTTCGGGCTGCGTTTCCTGCGCAAGGGCATTGCGCGGAC
CCTGGGCGGTGATCTCCTGGACTGGCTGCAGGGGTTTACCCGTACCCGGGGGCGCGCCCTTGTCGGTGGTGTGGCCGGCG
GGGCGCTGATGCCGTCGTCGACGGCTACGGCGATGCTCTCGGTACAGATGACCCGCCACGGCCGCGTGTCCTGGCGCAAC
GTGCTAGCAGTGCTGCTCGGCGCACAGCTGGGCAGTACGGTGCTGGTTCAGCTTGTCTCTTTCGATCTGCAGGACTACCA
GGGGCTCTTCCTGGCGGTGGGGGCGTTCCTCTTCCTGTTCCTGGAGGCCGCGCGACCGCGCGGTGTGGGTCAGACGTTGC
TGGCCTTCGGCTTTATGCTGCTCGGCATGGGGTTGCTGAGCGAGGCGGCCGTGGCCATGGGGTCGGATCCGGCGGTCGAG
GCGCTCTTCGAGGCTCTGGGCCAGTTACCGCTGCTGCTGATGGTCGCGGCCGTGCTGCTGACCCTGCTGGTCCAGAGCGC
GACCGCCTCCATTGCGGTGGCCCTGGCTCTGGTGGCGGGTGGGCAGATTAGTCTGGAAATGCTCCTGCTCTGGGTCCTGG
GCGCGAACATCGGCCTTTGCCTGACTGTGCTCATCGCGGGTTGGGGCGATGTGCAGGGACGCCGTCTGGGCCTGGCCGTG
CTTATGGTCAAGCTGCCTCTGGCGGCGGCCATCGCAGCCCTGTTGTTGGCTCTGCCCGGGCCGCCGCCGGAAGGCTGGGT
CGGCGGGTTGCCGCAGCAGGCTGCCTGGGTCCATACGCTGTTCAACCTGCTCGCGTGCCTGGCTGTTCTGGTAGCCCCCG
CTCTGGAACGCTGGGTCAGTGCCCTGACCCCGGATCCGGAAACGCCCGAGCGGCCTGCCGTCGCCCGCCTTGATCCGTTA
CTGCTGGATAACCCGACGTTGGCGATCAATGCCGCCATGCGCGAGACCCTGCGGGTGTTCGATGCCCTGCACCTGACCGG
GGAGATCGTCGTGCAGGGGCTGCGCCAGTCCCATTTGCCGGCCCATGCCGCCACGGAGGTTGAGGCGCGCACTCAAGACA
TCCAGCGGGTCTGTGAAGAACTGACCGAGTTTCTCGATGGCATTCCGGACGACTCCCTCAGCCCCTCGGACCAGGCGCTG
AAGGACACCCTGGATGACTTCATGCGCGAACTGCCCATGATTGTTCGCACCCTGGGGCCGGACATGCACGATCAGGTCCG
TCGGCTGCTCGAGCACCATGAGGAGTCCGTGGAGGCCTCACGGCCGCTGCTGCTGGAAGCCGCTTCTCGGTTCACCCAGC
AGATGAATACCGTGGCCCGCATGCTCATGCGCGAGCGTCCGGAACTGGGTCGCAAGATCCTGATGCGAAAGCAGGAGACC
AGCCGCTGGCTGATCGAGGCCAAGCGGCACCAGCCCGGGCTTCCTTACCCGGCCTGGGAAGTGCTTGACGGTTTTCAGCA
GCTCAACCGGCGGCTCAGCGGCGTGGTCTACGTCTACTGCCATGACGAGCCGGGCATGGACGCCCTGCAAAGTGAACGAG
ATTAG

Upstream 100 bases:

>100_bases
AACAGCAACGAGCGTGATGCGCGCCTAGGCTTCTGCGTTGCTGGCCAGGGGCCATCTTGTTGCCCTCAGTTTTGCTCCGG
GATCTGGGAACGTTGATGCG

Downstream 100 bases:

>100_bases
AGTTGACCCGTACCGCGATCTTCCCCGGAACCGATCGAGCTCGCCACGCTCATCGAGACGATCGCCCACGATGCGCGCTA
TGAGTTCGGTGCCGGTTCCG

Product: Na+/Pi-cotransporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 534; Mature: 534

Protein sequence:

>534_residues
MELINLLAGILLILFGLRFLRKGIARTLGGDLLDWLQGFTRTRGRALVGGVAGGALMPSSTATAMLSVQMTRHGRVSWRN
VLAVLLGAQLGSTVLVQLVSFDLQDYQGLFLAVGAFLFLFLEAARPRGVGQTLLAFGFMLLGMGLLSEAAVAMGSDPAVE
ALFEALGQLPLLLMVAAVLLTLLVQSATASIAVALALVAGGQISLEMLLLWVLGANIGLCLTVLIAGWGDVQGRRLGLAV
LMVKLPLAAAIAALLLALPGPPPEGWVGGLPQQAAWVHTLFNLLACLAVLVAPALERWVSALTPDPETPERPAVARLDPL
LLDNPTLAINAAMRETLRVFDALHLTGEIVVQGLRQSHLPAHAATEVEARTQDIQRVCEELTEFLDGIPDDSLSPSDQAL
KDTLDDFMRELPMIVRTLGPDMHDQVRRLLEHHEESVEASRPLLLEAASRFTQQMNTVARMLMRERPELGRKILMRKQET
SRWLIEAKRHQPGLPYPAWEVLDGFQQLNRRLSGVVYVYCHDEPGMDALQSERD

Sequences:

>Translated_534_residues
MELINLLAGILLILFGLRFLRKGIARTLGGDLLDWLQGFTRTRGRALVGGVAGGALMPSSTATAMLSVQMTRHGRVSWRN
VLAVLLGAQLGSTVLVQLVSFDLQDYQGLFLAVGAFLFLFLEAARPRGVGQTLLAFGFMLLGMGLLSEAAVAMGSDPAVE
ALFEALGQLPLLLMVAAVLLTLLVQSATASIAVALALVAGGQISLEMLLLWVLGANIGLCLTVLIAGWGDVQGRRLGLAV
LMVKLPLAAAIAALLLALPGPPPEGWVGGLPQQAAWVHTLFNLLACLAVLVAPALERWVSALTPDPETPERPAVARLDPL
LLDNPTLAINAAMRETLRVFDALHLTGEIVVQGLRQSHLPAHAATEVEARTQDIQRVCEELTEFLDGIPDDSLSPSDQAL
KDTLDDFMRELPMIVRTLGPDMHDQVRRLLEHHEESVEASRPLLLEAASRFTQQMNTVARMLMRERPELGRKILMRKQET
SRWLIEAKRHQPGLPYPAWEVLDGFQQLNRRLSGVVYVYCHDEPGMDALQSERD
>Mature_534_residues
MELINLLAGILLILFGLRFLRKGIARTLGGDLLDWLQGFTRTRGRALVGGVAGGALMPSSTATAMLSVQMTRHGRVSWRN
VLAVLLGAQLGSTVLVQLVSFDLQDYQGLFLAVGAFLFLFLEAARPRGVGQTLLAFGFMLLGMGLLSEAAVAMGSDPAVE
ALFEALGQLPLLLMVAAVLLTLLVQSATASIAVALALVAGGQISLEMLLLWVLGANIGLCLTVLIAGWGDVQGRRLGLAV
LMVKLPLAAAIAALLLALPGPPPEGWVGGLPQQAAWVHTLFNLLACLAVLVAPALERWVSALTPDPETPERPAVARLDPL
LLDNPTLAINAAMRETLRVFDALHLTGEIVVQGLRQSHLPAHAATEVEARTQDIQRVCEELTEFLDGIPDDSLSPSDQAL
KDTLDDFMRELPMIVRTLGPDMHDQVRRLLEHHEESVEASRPLLLEAASRFTQQMNTVARMLMRERPELGRKILMRKQET
SRWLIEAKRHQPGLPYPAWEVLDGFQQLNRRLSGVVYVYCHDEPGMDALQSERD

Specific function: Unknown

COG id: COG1283

COG function: function code P; Na+/phosphate symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis yqeW [H]

Homologues:

Organism=Escherichia coli, GI1790451, Length=409, Percent_Identity=26.4058679706601, Blast_Score=111, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003841
- InterPro:   IPR004633 [H]

Pfam domain/function: PF02690 Na_Pi_cotrans [H]

EC number: NA

Molecular weight: Translated: 58037; Mature: 58037

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELINLLAGILLILFGLRFLRKGIARTLGGDLLDWLQGFTRTRGRALVGGVAGGALMPSS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCC
TATAMLSVQMTRHGRVSWRNVLAVLLGAQLGSTVLVQLVSFDLQDYQGLFLAVGAFLFLF
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEAARPRGVGQTLLAFGFMLLGMGLLSEAAVAMGSDPAVEALFEALGQLPLLLMVAAVLL
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHH
TLLVQSATASIAVALALVAGGQISLEMLLLWVLGANIGLCLTVLIAGWGDVQGRRLGLAV
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHH
LMVKLPLAAAIAALLLALPGPPPEGWVGGLPQQAAWVHTLFNLLACLAVLVAPALERWVS
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALTPDPETPERPAVARLDPLLLDNPTLAINAAMRETLRVFDALHLTGEIVVQGLRQSHLP
HCCCCCCCCCCCCHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
AHAATEVEARTQDIQRVCEELTEFLDGIPDDSLSPSDQALKDTLDDFMRELPMIVRTLGP
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
DMHDQVRRLLEHHEESVEASRPLLLEAASRFTQQMNTVARMLMRERPELGRKILMRKQET
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
SRWLIEAKRHQPGLPYPAWEVLDGFQQLNRRLSGVVYVYCHDEPGMDALQSERD
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHCCCCC
>Mature Secondary Structure
MELINLLAGILLILFGLRFLRKGIARTLGGDLLDWLQGFTRTRGRALVGGVAGGALMPSS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCC
TATAMLSVQMTRHGRVSWRNVLAVLLGAQLGSTVLVQLVSFDLQDYQGLFLAVGAFLFLF
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEAARPRGVGQTLLAFGFMLLGMGLLSEAAVAMGSDPAVEALFEALGQLPLLLMVAAVLL
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHH
TLLVQSATASIAVALALVAGGQISLEMLLLWVLGANIGLCLTVLIAGWGDVQGRRLGLAV
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHH
LMVKLPLAAAIAALLLALPGPPPEGWVGGLPQQAAWVHTLFNLLACLAVLVAPALERWVS
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALTPDPETPERPAVARLDPLLLDNPTLAINAAMRETLRVFDALHLTGEIVVQGLRQSHLP
HCCCCCCCCCCCCHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
AHAATEVEARTQDIQRVCEELTEFLDGIPDDSLSPSDQALKDTLDDFMRELPMIVRTLGP
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
DMHDQVRRLLEHHEESVEASRPLLLEAASRFTQQMNTVARMLMRERPELGRKILMRKQET
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
SRWLIEAKRHQPGLPYPAWEVLDGFQQLNRRLSGVVYVYCHDEPGMDALQSERD
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]