| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998079
Identifier: 121998079
GI number: 121998079
Start: 1404714
End: 1405700
Strand: Reverse
Name: 121998079
Synonym: Hhal_1294
Alternate gene names: NA
Gene position: 1405700-1404714 (Counterclockwise)
Preceding gene: 121998081
Following gene: 121998073
Centisome position: 52.48
GC content: 52.58
Gene sequence:
>987_bases ATGCCCCACACCAATAAAAAAGCCATCTCTCGCTGGACCATCTACAGCTCAACCATTCTCCTGAGTAGTCTGTTGCTTGG TGGTTGTCTCAGCAGCGACGACGATGATGACGATTCGAATGGGGAAACTGACGAATCACCGCCTCAGGCAGCTTCCGATG CGACAATGAAAGAAGTCGCTCAATTCGTGACCGAAGACCTGGTGCTTCTAGATCTCTGGAAGCGCACTGGAGAATACCTC GAGCACTACGGTTGCGCTAGCGAAGAAGAAGACGAGCCGCCCGACTGCCCCGAGAACGGGACATTAACGCTCGCGGACCA AACCCTGACGTACGAGCAGTCCCGGTTCCACAGCTGGCAATCTGAGCTTGGTGATGAATATGTCGAACGGGACGGCACAA TTCGAGCTTCCAGCATAGGTCCTGTTGACGAAGGTCCGAGCGATAGTGAGGGGTATTTTGAAGTCGAATACACGGATAGA TTCTTTGATGGCGGCGGAAACCAGCTCCCTGGAGAGCTCGAAGTAGAAGGTGACTACTCAAGATCGTACCGCGACACGAC TAGCGTACCCAGAGTCATTACGGTTGATTCAGGACTCACCGGCCGCTGGCACGAGGATGATGAGCTATTCGAAATCCGAT GGGATTCCGACTTCACCTGGGAGCAGGAAACAATTAATCCCTATCGGATGCGTATATCGGGTGGCTTTGGCTGGTATTTA GAAGATGACGGTGAGAAAGTCTACGGGTACGACGAAGGATACGCCGAGGTCTCCACTGAAGTCGACTTGAAGTTTGACCA ATGGAACTGGAGTGCCTTTGAGGATGAAGCGCACGGATGGATTTGTGACGGGGAAATCCGCGTAAAACACCCCGACGGGT ACGATTTACGAATCAAGTACAGAAACGACGGAGCCACCGTTACTGATATAGAGGGTGGCGGAAGCATTCATCTGGAATGG GATGAGTTGAGGTGGGAGGGCTCATAG
Upstream 100 bases:
>100_bases ACAGCTAACCTTCCGTGTTGTACGTCATGATGCAATCCCTTATGATCTTAGAGCCCTTTGCGTGTAACGTCGACCAAAAA AAAGAAAAAGGACGATACGG
Downstream 100 bases:
>100_bases CCTAATTCATCTTATAGGTTCTCCGGACGCTGCCTGGCCGTCGGCGGGGCAGCATCCAATGAAATGAACCTGTGTACCGA CAACCTCGGGTCTTCACGGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 328; Mature: 327
Protein sequence:
>328_residues MPHTNKKAISRWTIYSSTILLSSLLLGGCLSSDDDDDDSNGETDESPPQAASDATMKEVAQFVTEDLVLLDLWKRTGEYL EHYGCASEEEDEPPDCPENGTLTLADQTLTYEQSRFHSWQSELGDEYVERDGTIRASSIGPVDEGPSDSEGYFEVEYTDR FFDGGGNQLPGELEVEGDYSRSYRDTTSVPRVITVDSGLTGRWHEDDELFEIRWDSDFTWEQETINPYRMRISGGFGWYL EDDGEKVYGYDEGYAEVSTEVDLKFDQWNWSAFEDEAHGWICDGEIRVKHPDGYDLRIKYRNDGATVTDIEGGGSIHLEW DELRWEGS
Sequences:
>Translated_328_residues MPHTNKKAISRWTIYSSTILLSSLLLGGCLSSDDDDDDSNGETDESPPQAASDATMKEVAQFVTEDLVLLDLWKRTGEYL EHYGCASEEEDEPPDCPENGTLTLADQTLTYEQSRFHSWQSELGDEYVERDGTIRASSIGPVDEGPSDSEGYFEVEYTDR FFDGGGNQLPGELEVEGDYSRSYRDTTSVPRVITVDSGLTGRWHEDDELFEIRWDSDFTWEQETINPYRMRISGGFGWYL EDDGEKVYGYDEGYAEVSTEVDLKFDQWNWSAFEDEAHGWICDGEIRVKHPDGYDLRIKYRNDGATVTDIEGGGSIHLEW DELRWEGS >Mature_327_residues PHTNKKAISRWTIYSSTILLSSLLLGGCLSSDDDDDDSNGETDESPPQAASDATMKEVAQFVTEDLVLLDLWKRTGEYLE HYGCASEEEDEPPDCPENGTLTLADQTLTYEQSRFHSWQSELGDEYVERDGTIRASSIGPVDEGPSDSEGYFEVEYTDRF FDGGGNQLPGELEVEGDYSRSYRDTTSVPRVITVDSGLTGRWHEDDELFEIRWDSDFTWEQETINPYRMRISGGFGWYLE DDGEKVYGYDEGYAEVSTEVDLKFDQWNWSAFEDEAHGWICDGEIRVKHPDGYDLRIKYRNDGATVTDIEGGGSIHLEWD ELRWEGS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37308; Mature: 37177
Theoretical pI: Translated: 3.86; Mature: 3.86
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHTNKKAISRWTIYSSTILLSSLLLGGCLSSDDDDDDSNGETDESPPQAASDATMKEVA CCCCCCHHHEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH QFVTEDLVLLDLWKRTGEYLEHYGCASEEEDEPPDCPENGTLTLADQTLTYEQSRFHSWQ HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCEEEHHHHHHHHHH SELGDEYVERDGTIRASSIGPVDEGPSDSEGYFEVEYTDRFFDGGGNQLPGELEVEGDYS HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEEEEEECEEECCCCCCCCCEEEECCCCC RSYRDTTSVPRVITVDSGLTGRWHEDDELFEIRWDSDFTWEQETINPYRMRISGGFGWYL CCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCEEEEE EDDGEKVYGYDEGYAEVSTEVDLKFDQWNWSAFEDEAHGWICDGEIRVKHPDGYDLRIKY ECCCCEEEECCCCCEEECEEEEEEECCCCCCCCCCCCCCEEECCEEEEECCCCCEEEEEE RNDGATVTDIEGGGSIHLEWDELRWEGS ECCCCEEEEECCCCEEEEEEHHEEECCC >Mature Secondary Structure PHTNKKAISRWTIYSSTILLSSLLLGGCLSSDDDDDDSNGETDESPPQAASDATMKEVA CCCCCHHHEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH QFVTEDLVLLDLWKRTGEYLEHYGCASEEEDEPPDCPENGTLTLADQTLTYEQSRFHSWQ HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCEEEHHHHHHHHHH SELGDEYVERDGTIRASSIGPVDEGPSDSEGYFEVEYTDRFFDGGGNQLPGELEVEGDYS HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEEEEEECEEECCCCCCCCCEEEECCCCC RSYRDTTSVPRVITVDSGLTGRWHEDDELFEIRWDSDFTWEQETINPYRMRISGGFGWYL CCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCEEEEE EDDGEKVYGYDEGYAEVSTEVDLKFDQWNWSAFEDEAHGWICDGEIRVKHPDGYDLRIKY ECCCCEEEECCCCCEEECEEEEEEECCCCCCCCCCCCCCEEECCEEEEECCCCCEEEEEE RNDGATVTDIEGGGSIHLEWDELRWEGS ECCCCEEEEECCCCEEEEEEHHEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA