Definition Halorhodospira halophila SL1 chromosome, complete genome.
Accession NC_008789
Length 2,678,452

Click here to switch to the map view.

The map label for this gene is 121998079

Identifier: 121998079

GI number: 121998079

Start: 1404714

End: 1405700

Strand: Reverse

Name: 121998079

Synonym: Hhal_1294

Alternate gene names: NA

Gene position: 1405700-1404714 (Counterclockwise)

Preceding gene: 121998081

Following gene: 121998073

Centisome position: 52.48

GC content: 52.58

Gene sequence:

>987_bases
ATGCCCCACACCAATAAAAAAGCCATCTCTCGCTGGACCATCTACAGCTCAACCATTCTCCTGAGTAGTCTGTTGCTTGG
TGGTTGTCTCAGCAGCGACGACGATGATGACGATTCGAATGGGGAAACTGACGAATCACCGCCTCAGGCAGCTTCCGATG
CGACAATGAAAGAAGTCGCTCAATTCGTGACCGAAGACCTGGTGCTTCTAGATCTCTGGAAGCGCACTGGAGAATACCTC
GAGCACTACGGTTGCGCTAGCGAAGAAGAAGACGAGCCGCCCGACTGCCCCGAGAACGGGACATTAACGCTCGCGGACCA
AACCCTGACGTACGAGCAGTCCCGGTTCCACAGCTGGCAATCTGAGCTTGGTGATGAATATGTCGAACGGGACGGCACAA
TTCGAGCTTCCAGCATAGGTCCTGTTGACGAAGGTCCGAGCGATAGTGAGGGGTATTTTGAAGTCGAATACACGGATAGA
TTCTTTGATGGCGGCGGAAACCAGCTCCCTGGAGAGCTCGAAGTAGAAGGTGACTACTCAAGATCGTACCGCGACACGAC
TAGCGTACCCAGAGTCATTACGGTTGATTCAGGACTCACCGGCCGCTGGCACGAGGATGATGAGCTATTCGAAATCCGAT
GGGATTCCGACTTCACCTGGGAGCAGGAAACAATTAATCCCTATCGGATGCGTATATCGGGTGGCTTTGGCTGGTATTTA
GAAGATGACGGTGAGAAAGTCTACGGGTACGACGAAGGATACGCCGAGGTCTCCACTGAAGTCGACTTGAAGTTTGACCA
ATGGAACTGGAGTGCCTTTGAGGATGAAGCGCACGGATGGATTTGTGACGGGGAAATCCGCGTAAAACACCCCGACGGGT
ACGATTTACGAATCAAGTACAGAAACGACGGAGCCACCGTTACTGATATAGAGGGTGGCGGAAGCATTCATCTGGAATGG
GATGAGTTGAGGTGGGAGGGCTCATAG

Upstream 100 bases:

>100_bases
ACAGCTAACCTTCCGTGTTGTACGTCATGATGCAATCCCTTATGATCTTAGAGCCCTTTGCGTGTAACGTCGACCAAAAA
AAAGAAAAAGGACGATACGG

Downstream 100 bases:

>100_bases
CCTAATTCATCTTATAGGTTCTCCGGACGCTGCCTGGCCGTCGGCGGGGCAGCATCCAATGAAATGAACCTGTGTACCGA
CAACCTCGGGTCTTCACGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 327

Protein sequence:

>328_residues
MPHTNKKAISRWTIYSSTILLSSLLLGGCLSSDDDDDDSNGETDESPPQAASDATMKEVAQFVTEDLVLLDLWKRTGEYL
EHYGCASEEEDEPPDCPENGTLTLADQTLTYEQSRFHSWQSELGDEYVERDGTIRASSIGPVDEGPSDSEGYFEVEYTDR
FFDGGGNQLPGELEVEGDYSRSYRDTTSVPRVITVDSGLTGRWHEDDELFEIRWDSDFTWEQETINPYRMRISGGFGWYL
EDDGEKVYGYDEGYAEVSTEVDLKFDQWNWSAFEDEAHGWICDGEIRVKHPDGYDLRIKYRNDGATVTDIEGGGSIHLEW
DELRWEGS

Sequences:

>Translated_328_residues
MPHTNKKAISRWTIYSSTILLSSLLLGGCLSSDDDDDDSNGETDESPPQAASDATMKEVAQFVTEDLVLLDLWKRTGEYL
EHYGCASEEEDEPPDCPENGTLTLADQTLTYEQSRFHSWQSELGDEYVERDGTIRASSIGPVDEGPSDSEGYFEVEYTDR
FFDGGGNQLPGELEVEGDYSRSYRDTTSVPRVITVDSGLTGRWHEDDELFEIRWDSDFTWEQETINPYRMRISGGFGWYL
EDDGEKVYGYDEGYAEVSTEVDLKFDQWNWSAFEDEAHGWICDGEIRVKHPDGYDLRIKYRNDGATVTDIEGGGSIHLEW
DELRWEGS
>Mature_327_residues
PHTNKKAISRWTIYSSTILLSSLLLGGCLSSDDDDDDSNGETDESPPQAASDATMKEVAQFVTEDLVLLDLWKRTGEYLE
HYGCASEEEDEPPDCPENGTLTLADQTLTYEQSRFHSWQSELGDEYVERDGTIRASSIGPVDEGPSDSEGYFEVEYTDRF
FDGGGNQLPGELEVEGDYSRSYRDTTSVPRVITVDSGLTGRWHEDDELFEIRWDSDFTWEQETINPYRMRISGGFGWYLE
DDGEKVYGYDEGYAEVSTEVDLKFDQWNWSAFEDEAHGWICDGEIRVKHPDGYDLRIKYRNDGATVTDIEGGGSIHLEWD
ELRWEGS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37308; Mature: 37177

Theoretical pI: Translated: 3.86; Mature: 3.86

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHTNKKAISRWTIYSSTILLSSLLLGGCLSSDDDDDDSNGETDESPPQAASDATMKEVA
CCCCCCHHHEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
QFVTEDLVLLDLWKRTGEYLEHYGCASEEEDEPPDCPENGTLTLADQTLTYEQSRFHSWQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCEEEHHHHHHHHHH
SELGDEYVERDGTIRASSIGPVDEGPSDSEGYFEVEYTDRFFDGGGNQLPGELEVEGDYS
HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEEEEEECEEECCCCCCCCCEEEECCCCC
RSYRDTTSVPRVITVDSGLTGRWHEDDELFEIRWDSDFTWEQETINPYRMRISGGFGWYL
CCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCEEEEE
EDDGEKVYGYDEGYAEVSTEVDLKFDQWNWSAFEDEAHGWICDGEIRVKHPDGYDLRIKY
ECCCCEEEECCCCCEEECEEEEEEECCCCCCCCCCCCCCEEECCEEEEECCCCCEEEEEE
RNDGATVTDIEGGGSIHLEWDELRWEGS
ECCCCEEEEECCCCEEEEEEHHEEECCC
>Mature Secondary Structure 
PHTNKKAISRWTIYSSTILLSSLLLGGCLSSDDDDDDSNGETDESPPQAASDATMKEVA
CCCCCHHHEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
QFVTEDLVLLDLWKRTGEYLEHYGCASEEEDEPPDCPENGTLTLADQTLTYEQSRFHSWQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCEEEHHHHHHHHHH
SELGDEYVERDGTIRASSIGPVDEGPSDSEGYFEVEYTDRFFDGGGNQLPGELEVEGDYS
HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEEEEEECEEECCCCCCCCCEEEECCCCC
RSYRDTTSVPRVITVDSGLTGRWHEDDELFEIRWDSDFTWEQETINPYRMRISGGFGWYL
CCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCEEEEE
EDDGEKVYGYDEGYAEVSTEVDLKFDQWNWSAFEDEAHGWICDGEIRVKHPDGYDLRIKY
ECCCCEEEECCCCCEEECEEEEEEECCCCCCCCCCCCCCEEECCEEEEECCCCCEEEEEE
RNDGATVTDIEGGGSIHLEWDELRWEGS
ECCCCEEEEECCCCEEEEEEHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA