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The map label for this gene is IS1086 [H]

Identifier: 121998065

GI number: 121998065

Start: 1389273

End: 1390304

Strand: Reverse

Name: IS1086 [H]

Synonym: Hhal_1276

Alternate gene names: 121998065

Gene position: 1390304-1389273 (Counterclockwise)

Preceding gene: 121998066

Following gene: 121998064

Centisome position: 51.91

GC content: 66.76

Gene sequence:

>1032_bases
ATGGCGAACGGATACCAGCATCTCAGTGATCAGGAGCGCGCCGTCATCTTGAGTGAGCGCAGCCGTGGCAGCAGTGCGCG
GGCGATCAGCCACCTTCTCGGGCGCAGTCCGTCGACGGTGACCCGGGAGTTGGCCCGCGGCAGCGACCCCGCGGCAGAGA
CGGCGTACTGCCCGACGCAGGGCGCGCAGGAGTACCGCGCCCGACGGCGCCGCTGCGGTCGCCCCGCCAAGCTGGTTGAG
GGCGGATGGCTGTATCGCTATGTCCTGGACCGGCTGTGCTACTGGCAGTGGTCTCCCGAGCAGATCGCCGGCAGACTGGC
GCGTATGAACCCCGAGGATCCTGAGGCTCGCGTCAGCCACGAGACCATCTACGCGGCGATCTATGCCCATCCCAAGGGCT
CGCTCAAGCAGGAGCTGATCCGGGCGCTTCGCCGCCAGAAACCGCAGCGCGGGCAACGGCGGCGCACGGCCGCGCGAGGC
GGCTCGATCGCCCCGGAGCACCTGCCCATCGCCTATCGGCCTGAAGAGATCGAGCAGCGGCTGATGCCCGGCCACTGGGA
GGGCGACCTGATCAAGGGCGCCTACAACCGCTCCTCGGTCGGCACGCTGGTTGAGCGCAAGACCCGCTACGTCGTACTGA
GCAAGATGCACGACGGTACCGCCGAGGCCGCCCTGGAGGGCTTCCATCGGCAGATGAGGCGCCTGCCGGCAATCCTGCGT
CAGAGTCTGACCTACGACCGGGGCAGCGAGATGGCCTGCCATGAGCGGCTTGCCCGGCGGTTGAATCTGTCGATCTGGTT
CGCCGATCCGCACGCGCCCTGGCAGCGTGGCAGCAACGAGAACACCAACGGCCTGCTGCGCCAGTACCTGCCCAAGGGCG
CCGATCTCAGCGAGCCGAGCCAGACCCAACTCAATGATATTGCGCGGCTTCTCAACCAGCGGCCACGCAAGGCACTGGAC
TTCAGAACGCCCGAGGAGGCCATGACTGAAGAGCTTCAGGCCTTTTCGAAGACTGTTGCGCTTGATTCTTGA

Upstream 100 bases:

>100_bases
TGGTTCATGCTGCAATTCCGAGGCTGTCTCGGTACTCAAGAGGGCGTAGGCTCAACTTTCAAGCGCAACACCCATGCCCA
GAGCGGGGTAGGATGTTGCG

Downstream 100 bases:

>100_bases
GATCAGCCCATTCACGCGCGACGGCCTCGAACGTGTGCGCATCGGCTGACGCGGCCGCGTGTCTTTGGGTCCTGCGGTGC
TGAATGGGGTCGACGCCATC

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 342

Protein sequence:

>343_residues
MANGYQHLSDQERAVILSERSRGSSARAISHLLGRSPSTVTRELARGSDPAAETAYCPTQGAQEYRARRRRCGRPAKLVE
GGWLYRYVLDRLCYWQWSPEQIAGRLARMNPEDPEARVSHETIYAAIYAHPKGSLKQELIRALRRQKPQRGQRRRTAARG
GSIAPEHLPIAYRPEEIEQRLMPGHWEGDLIKGAYNRSSVGTLVERKTRYVVLSKMHDGTAEAALEGFHRQMRRLPAILR
QSLTYDRGSEMACHERLARRLNLSIWFADPHAPWQRGSNENTNGLLRQYLPKGADLSEPSQTQLNDIARLLNQRPRKALD
FRTPEEAMTEELQAFSKTVALDS

Sequences:

>Translated_343_residues
MANGYQHLSDQERAVILSERSRGSSARAISHLLGRSPSTVTRELARGSDPAAETAYCPTQGAQEYRARRRRCGRPAKLVE
GGWLYRYVLDRLCYWQWSPEQIAGRLARMNPEDPEARVSHETIYAAIYAHPKGSLKQELIRALRRQKPQRGQRRRTAARG
GSIAPEHLPIAYRPEEIEQRLMPGHWEGDLIKGAYNRSSVGTLVERKTRYVVLSKMHDGTAEAALEGFHRQMRRLPAILR
QSLTYDRGSEMACHERLARRLNLSIWFADPHAPWQRGSNENTNGLLRQYLPKGADLSEPSQTQLNDIARLLNQRPRKALD
FRTPEEAMTEELQAFSKTVALDS
>Mature_342_residues
ANGYQHLSDQERAVILSERSRGSSARAISHLLGRSPSTVTRELARGSDPAAETAYCPTQGAQEYRARRRRCGRPAKLVEG
GWLYRYVLDRLCYWQWSPEQIAGRLARMNPEDPEARVSHETIYAAIYAHPKGSLKQELIRALRRQKPQRGQRRRTAARGG
SIAPEHLPIAYRPEEIEQRLMPGHWEGDLIKGAYNRSSVGTLVERKTRYVVLSKMHDGTAEAALEGFHRQMRRLPAILRQ
SLTYDRGSEMACHERLARRLNLSIWFADPHAPWQRGSNENTNGLLRQYLPKGADLSEPSQTQLNDIARLLNQRPRKALDF
RTPEEAMTEELQAFSKTVALDS

Specific function: Required for the transposition of the insertion element (Potential) [H]

COG id: COG2826

COG function: function code L; Transposase and inactivated derivatives, IS30 family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786450, Length=324, Percent_Identity=38.8888888888889, Blast_Score=206, Evalue=1e-54,
Organism=Escherichia coli, GI1790736, Length=324, Percent_Identity=38.8888888888889, Blast_Score=206, Evalue=2e-54,
Organism=Escherichia coli, GI1787671, Length=324, Percent_Identity=38.8888888888889, Blast_Score=206, Evalue=2e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337
- InterPro:   IPR001598 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 39101; Mature: 38970

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: PS50994 INTEGRASE ; PS01043 TRANSPOSASE_IS30

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANGYQHLSDQERAVILSERSRGSSARAISHLLGRSPSTVTRELARGSDPAAETAYCPTQ
CCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCC
GAQEYRARRRRCGRPAKLVEGGWLYRYVLDRLCYWQWSPEQIAGRLARMNPEDPEARVSH
CHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHH
ETIYAAIYAHPKGSLKQELIRALRRQKPQRGQRRRTAARGGSIAPEHLPIAYRPEEIEQR
HHEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
LMPGHWEGDLIKGAYNRSSVGTLVERKTRYVVLSKMHDGTAEAALEGFHRQMRRLPAILR
CCCCCCCCCHHHCCCCCHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
QSLTYDRGSEMACHERLARRLNLSIWFADPHAPWQRGSNENTNGLLRQYLPKGADLSEPS
HHHCCCCCCCHHHHHHHHHHHCCEEEECCCCCHHHCCCCCCHHHHHHHHCCCCCCCCCCC
QTQLNDIARLLNQRPRKALDFRTPEEAMTEELQAFSKTVALDS
HHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ANGYQHLSDQERAVILSERSRGSSARAISHLLGRSPSTVTRELARGSDPAAETAYCPTQ
CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCC
GAQEYRARRRRCGRPAKLVEGGWLYRYVLDRLCYWQWSPEQIAGRLARMNPEDPEARVSH
CHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHH
ETIYAAIYAHPKGSLKQELIRALRRQKPQRGQRRRTAARGGSIAPEHLPIAYRPEEIEQR
HHEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
LMPGHWEGDLIKGAYNRSSVGTLVERKTRYVVLSKMHDGTAEAALEGFHRQMRRLPAILR
CCCCCCCCCHHHCCCCCHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
QSLTYDRGSEMACHERLARRLNLSIWFADPHAPWQRGSNENTNGLLRQYLPKGADLSEPS
HHHCCCCCCCHHHHHHHHHHHCCEEEECCCCCHHHCCCCCCHHHHHHHHCCCCCCCCCCC
QTQLNDIARLLNQRPRKALDFRTPEEAMTEELQAFSKTVALDS
HHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1334071 [H]