| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
Click here to switch to the map view.
The map label for this gene is 121997914
Identifier: 121997914
GI number: 121997914
Start: 1219826
End: 1220266
Strand: Reverse
Name: 121997914
Synonym: Hhal_1123
Alternate gene names: NA
Gene position: 1220266-1219826 (Counterclockwise)
Preceding gene: 121997915
Following gene: 121997913
Centisome position: 45.56
GC content: 69.39
Gene sequence:
>441_bases GTGCAGGAGGACGCCACCACCTACTGCCTGACACTGTTCGTGACGGAAGCGATGCGGGTCGCGGTCGGGCGGCTCGGCGT GGTGGCGATTCCGGCCGGCTGGTGGGTGTACACGGGCAGCGCCAGGCGCAACATGGATGCCCGGATCGCACGGCACCTGC GCCGGGAGAAGCCGCAGCGCTGGCACCTGGATTACCTGACGAGTGATTCGCGGGTCATTGTGGTTTCGGTCACCCGGCAC ACCGAGCCGGAGTGTCAGCGCAACCGCCGCAACGGCGGTGTTGTAGTGGTGCCGGGCTTCGGTGCCAGCGACTGTGCGGC CGGGTGCGGTAGCCACCTACGCTGGCTCGGGGCGACACCCGACCCGATCACCGCGGGGTCCGCGGGCGCCGCAGTCGGCT GCTCCCTGTACCCCCTGGAACGAGGACACCCATGTACGTAG
Upstream 100 bases:
>100_bases GACGAGGGGTTCAACGAGTACATCGTCAAGCCCTTCGAGCTGGAGCAGCTCGATGCGCTGATCCGGGAGGTCCGGTTGAG TCGCTAGCCGGAGGGCCGCG
Downstream 100 bases:
>100_bases ATCCCATGCCCCTGAGTGCCTACCCGTGGTACCTGCGCCCCTGGTTCTGGTGGCAGCGGCGGCGTGCCGGGTCGGTGGCG GAGCCGATCCGCCTCTGGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 146; Mature: 146
Protein sequence:
>146_residues MQEDATTYCLTLFVTEAMRVAVGRLGVVAIPAGWWVYTGSARRNMDARIARHLRREKPQRWHLDYLTSDSRVIVVSVTRH TEPECQRNRRNGGVVVVPGFGASDCAAGCGSHLRWLGATPDPITAGSAGAAVGCSLYPLERGHPCT
Sequences:
>Translated_146_residues MQEDATTYCLTLFVTEAMRVAVGRLGVVAIPAGWWVYTGSARRNMDARIARHLRREKPQRWHLDYLTSDSRVIVVSVTRH TEPECQRNRRNGGVVVVPGFGASDCAAGCGSHLRWLGATPDPITAGSAGAAVGCSLYPLERGHPCT >Mature_146_residues MQEDATTYCLTLFVTEAMRVAVGRLGVVAIPAGWWVYTGSARRNMDARIARHLRREKPQRWHLDYLTSDSRVIVVSVTRH TEPECQRNRRNGGVVVVPGFGASDCAAGCGSHLRWLGATPDPITAGSAGAAVGCSLYPLERGHPCT
Specific function: Unknown
COG id: COG1833
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15877; Mature: 15877
Theoretical pI: Translated: 8.85; Mature: 8.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 4.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQEDATTYCLTLFVTEAMRVAVGRLGVVAIPAGWWVYTGSARRNMDARIARHLRREKPQR CCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHCCCCE WHLDYLTSDSRVIVVSVTRHTEPECQRNRRNGGVVVVPGFGASDCAAGCGSHLRWLGATP EEEEEECCCCEEEEEEECCCCCHHHHHHCCCCCEEEECCCCCHHHHHHCCCCEEECCCCC DPITAGSAGAAVGCSLYPLERGHPCT CCCCCCCCCCCCCCEEEECCCCCCCC >Mature Secondary Structure MQEDATTYCLTLFVTEAMRVAVGRLGVVAIPAGWWVYTGSARRNMDARIARHLRREKPQR CCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHCCCCE WHLDYLTSDSRVIVVSVTRHTEPECQRNRRNGGVVVVPGFGASDCAAGCGSHLRWLGATP EEEEEECCCCEEEEEEECCCCCHHHHHHCCCCCEEEECCCCCHHHHHHCCCCEEECCCCC DPITAGSAGAAVGCSLYPLERGHPCT CCCCCCCCCCCCCCEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA