| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121997912
Identifier: 121997912
GI number: 121997912
Start: 1217408
End: 1219195
Strand: Reverse
Name: 121997912
Synonym: Hhal_1121
Alternate gene names: NA
Gene position: 1219195-1217408 (Counterclockwise)
Preceding gene: 121997913
Following gene: 121997911
Centisome position: 45.52
GC content: 66.33
Gene sequence:
>1788_bases GTGAGCACGCTCGACCAAGCCCTGATTGGCAACTGCGCGTTTGCCGCCCTGGTCAACCGCCAGGCCGAGATCACTTGGGC GTGCATGCCCCGCTTCGATGGCGATCCGGTCTTCTGCTCCCTGCTCGGCGATCCCGCGGCCGGTGCCGGCGCCGGGCGTT TCGCCGTCGAGCTGGAGGGGCTGGCCCGCACCGAGCAGTGGTATGTTCGCAATACCGCCATCGTGGTGACGCGGCTCTAC GACCACCAGGGCGGGGTGGTGGAGGTGACCGATTTCGCCCCCCGCTTCGAGCAGTTCGGCCGCACCTTTCGCCCGGTGGA GCTGATCCGTCAGGTCCGTCGGGTTGCCGGCTCACCCCTGGTCTCTCTGGTGGTGCGGCCGGTGTTCGATCACGGCCGGT CGTTGCCCAGCGTGACTCAGGGCAGCAACCACGTGCGCTACGTCGGCCCGGGCCAGGTCCTGCGCCTGACCACCGACGCC TCGTTGACCGCGGTCCTGGACGAGACCCCGTTCATCCTCGAGGACGACCTGACGCTGGCCTTCGGTCCCGACGAGACCCT GCTCCAGTCGGCCCGTGAGACCGGCTACCAGTTCTATGAGCACACCCTAACCTATTGGCAGGAGTGGGTGCGCAACCTGG CCATCCCCTTTGAGTGGCAGGAGGCGGTGATCCGCGCGGCGATCACCCTCAAGCTCAACACCTACGAGGACACCGGTGCG GTGATCGCCGCGGTGACCACTTCGATCCCCGAGGCCCCGGACACCGGCCGCAACTGGGATTACCGTTACTGTTGGCTGCG GGACGCCTACTTCGTGATCAACGCCCTCAACCGCCTGGGGGCGACCAAGACGATGGAGCACTACGTGCGCTTCATCATCA ACACCACTGCCCGCAACGAGGGGCGGTCGCTGCGGCCGGTGTATCGCATCAACGGGCGTGATGACCTTTACGAGACCATC GCCTACGGCTTGCCCGGATACCGGGAGATGGGGCCGGTGCGCATCGGCAACCAGGCCTACGAGCAGCAGCAGAACGATGT TTACGGGTCAGTGATCCTGGCCACCGCGCACTTGTTCTTCGACGAGCGGCTGCGCCGCCGCGGCGATGAATCGCTGTTCC GCCGTCTCGAGCAGCTCGGTGAGCAGGCCGTCGCCGTCTACCGCGAGCCGGATGCTGGCCCCTGGGAGTTCCGCGGCTTT GAAAAGGTGCATACCTTCTCGGCGGCGATCTGTTGGGCGGCTGCCCGGAACCTGCGTGCCATCGCCGCCAAGCTGGGGTT GATGGAGCGGGCTGATTACTGGCGCCGCCGGGCCGACGAGATGGCCGACACCATCCGCAACAGCGCCTGGAACGAGCAAC GCAACAGCTACATGGCCAGTTTCGGCGGCCAGGACCTCGACGCCAGCCTGATGCTGCTCTACGAGTGGGGGTTCCTGCGT GCCGGAGACCCGCGCCTGGCCGGGACCGTGCGCGCCGTCGAGCAGGAGCTGCGCCACGGCGACTTCCTCTTCCGTTACGT CCACGAGGACGATTTCGGCAAGCCCCACACGGCCTTCACCACCTGTACCTTCTGGTACATCGACGCCCTGGCGGCGGTGG GCCGTGAGGCCGAGGCCCGCGCACTGTTCGAGCGCCTGCTCGAATGTCGCAACCACGTGGGTCTGCTCTCGGAGGATATC GATCCGTACACCGGAGAACTCTGGGGGAACTTCCCGCAGACCTACAGCATGGTCGGTCTGATCAACTCCGCAATGCGCCT GAGTCGCAGTTGGGAGGAACCGCTGTGA
Upstream 100 bases:
>100_bases GTCAACGAGCGTGGCGAGGCGGTAGCCTGGGAGGCGAACCCGGCCCGGGGGAAGTAGAGTATCCTCCGGAGAGTGTGGAT CCGAGCGACGAGGAGGTCCC
Downstream 100 bases:
>100_bases GTCGACTGGTAACCGTTTCCAATCGTGTGGCCTTGCCCAGCCAGCTGCAGGCCGCGCAGGGTGGTCTGGCCGTCGGCCTG CGTTCGGCGCTGGAGGAGTC
Product: glycoside hydrolase 15-like
Products: NA
Alternate protein names: Glycosyl Hydrolase; Glycosyl Hydrolase Family; Glycoside Hydrolase Family; Glucoamylase; Glycosy Hydrolase Family Protein; Glycoside Hydrolase Family Protein; Trehalose-Phosphatase; Glucoamylase-Like Glycosyl Hydrolase; Trehalose Phosphatase; Glycosyl Hydrolase Protein; Trehalose-Phosphatase/ Glycoside Hydrolase; Glucoamylase Or Related Glycosyl Hydrolase Protein; Glucoamylase Or Related Glycosyl Hydrolase; Six-Hairpin Glycosidase-Like Protein; Hydrolase; Glycosyl Hydrolase Glycosyl Hydrolase Family; Glycosyl Hydrolase Family Protein; Glucoamylase-Related Protein Trehalase
Number of amino acids: Translated: 595; Mature: 594
Protein sequence:
>595_residues MSTLDQALIGNCAFAALVNRQAEITWACMPRFDGDPVFCSLLGDPAAGAGAGRFAVELEGLARTEQWYVRNTAIVVTRLY DHQGGVVEVTDFAPRFEQFGRTFRPVELIRQVRRVAGSPLVSLVVRPVFDHGRSLPSVTQGSNHVRYVGPGQVLRLTTDA SLTAVLDETPFILEDDLTLAFGPDETLLQSARETGYQFYEHTLTYWQEWVRNLAIPFEWQEAVIRAAITLKLNTYEDTGA VIAAVTTSIPEAPDTGRNWDYRYCWLRDAYFVINALNRLGATKTMEHYVRFIINTTARNEGRSLRPVYRINGRDDLYETI AYGLPGYREMGPVRIGNQAYEQQQNDVYGSVILATAHLFFDERLRRRGDESLFRRLEQLGEQAVAVYREPDAGPWEFRGF EKVHTFSAAICWAAARNLRAIAAKLGLMERADYWRRRADEMADTIRNSAWNEQRNSYMASFGGQDLDASLMLLYEWGFLR AGDPRLAGTVRAVEQELRHGDFLFRYVHEDDFGKPHTAFTTCTFWYIDALAAVGREAEARALFERLLECRNHVGLLSEDI DPYTGELWGNFPQTYSMVGLINSAMRLSRSWEEPL
Sequences:
>Translated_595_residues MSTLDQALIGNCAFAALVNRQAEITWACMPRFDGDPVFCSLLGDPAAGAGAGRFAVELEGLARTEQWYVRNTAIVVTRLY DHQGGVVEVTDFAPRFEQFGRTFRPVELIRQVRRVAGSPLVSLVVRPVFDHGRSLPSVTQGSNHVRYVGPGQVLRLTTDA SLTAVLDETPFILEDDLTLAFGPDETLLQSARETGYQFYEHTLTYWQEWVRNLAIPFEWQEAVIRAAITLKLNTYEDTGA VIAAVTTSIPEAPDTGRNWDYRYCWLRDAYFVINALNRLGATKTMEHYVRFIINTTARNEGRSLRPVYRINGRDDLYETI AYGLPGYREMGPVRIGNQAYEQQQNDVYGSVILATAHLFFDERLRRRGDESLFRRLEQLGEQAVAVYREPDAGPWEFRGF EKVHTFSAAICWAAARNLRAIAAKLGLMERADYWRRRADEMADTIRNSAWNEQRNSYMASFGGQDLDASLMLLYEWGFLR AGDPRLAGTVRAVEQELRHGDFLFRYVHEDDFGKPHTAFTTCTFWYIDALAAVGREAEARALFERLLECRNHVGLLSEDI DPYTGELWGNFPQTYSMVGLINSAMRLSRSWEEPL >Mature_594_residues STLDQALIGNCAFAALVNRQAEITWACMPRFDGDPVFCSLLGDPAAGAGAGRFAVELEGLARTEQWYVRNTAIVVTRLYD HQGGVVEVTDFAPRFEQFGRTFRPVELIRQVRRVAGSPLVSLVVRPVFDHGRSLPSVTQGSNHVRYVGPGQVLRLTTDAS LTAVLDETPFILEDDLTLAFGPDETLLQSARETGYQFYEHTLTYWQEWVRNLAIPFEWQEAVIRAAITLKLNTYEDTGAV IAAVTTSIPEAPDTGRNWDYRYCWLRDAYFVINALNRLGATKTMEHYVRFIINTTARNEGRSLRPVYRINGRDDLYETIA YGLPGYREMGPVRIGNQAYEQQQNDVYGSVILATAHLFFDERLRRRGDESLFRRLEQLGEQAVAVYREPDAGPWEFRGFE KVHTFSAAICWAAARNLRAIAAKLGLMERADYWRRRADEMADTIRNSAWNEQRNSYMASFGGQDLDASLMLLYEWGFLRA GDPRLAGTVRAVEQELRHGDFLFRYVHEDDFGKPHTAFTTCTFWYIDALAAVGREAEARALFERLLECRNHVGLLSEDID PYTGELWGNFPQTYSMVGLINSAMRLSRSWEEPL
Specific function: Unknown
COG id: COG3387
COG function: function code G; Glucoamylase and related glycosyl hydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 67653; Mature: 67522
Theoretical pI: Translated: 5.23; Mature: 5.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTLDQALIGNCAFAALVNRQAEITWACMPRFDGDPVFCSLLGDPAAGAGAGRFAVELEG CCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCEEEEEECC LARTEQWYVRNTAIVVTRLYDHQGGVVEVTDFAPRFEQFGRTFRPVELIRQVRRVAGSPL CCCCHHHEEECEEEEEEEEECCCCCEEEECCCCHHHHHHCCCCCHHHHHHHHHHHHCCHH VSLVVRPVFDHGRSLPSVTQGSNHVRYVGPGQVLRLTTDASLTAVLDETPFILEDDLTLA HHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEEEECCCCEEEEECCCCCEEECCEEEE FGPDETLLQSARETGYQFYEHTLTYWQEWVRNLAIPFEWQEAVIRAAITLKLNTYEDTGA ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEEEEEEECCCCCCC VIAAVTTSIPEAPDTGRNWDYRYCWLRDAYFVINALNRLGATKTMEHYVRFIINTTARNE EEEEEECCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC GRSLRPVYRINGRDDLYETIAYGLPGYREMGPVRIGNQAYEQQQNDVYGSVILATAHLFF CCCCCCEEEECCCHHHHHHHHHCCCCCHHCCCEEECCHHHHHHHCCHHHHHHHHHHHHHH DERLRRRGDESLFRRLEQLGEQAVAVYREPDAGPWEFRGFEKVHTFSAAICWAAARNLRA HHHHHHCCCHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH IAAKLGLMERADYWRRRADEMADTIRNSAWNEQRNSYMASFGGQDLDASLMLLYEWGFLR HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHEEEEEECCCCC AGDPRLAGTVRAVEQELRHGDFLFRYVHEDDFGKPHTAFTTCTFWYIDALAAVGREAEAR CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHH ALFERLLECRNHVGLLSEDIDPYTGELWGNFPQTYSMVGLINSAMRLSRSWEEPL HHHHHHHHHHHCCCCHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure STLDQALIGNCAFAALVNRQAEITWACMPRFDGDPVFCSLLGDPAAGAGAGRFAVELEG CCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCEEEEEECC LARTEQWYVRNTAIVVTRLYDHQGGVVEVTDFAPRFEQFGRTFRPVELIRQVRRVAGSPL CCCCHHHEEECEEEEEEEEECCCCCEEEECCCCHHHHHHCCCCCHHHHHHHHHHHHCCHH VSLVVRPVFDHGRSLPSVTQGSNHVRYVGPGQVLRLTTDASLTAVLDETPFILEDDLTLA HHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEEEECCCCEEEEECCCCCEEECCEEEE FGPDETLLQSARETGYQFYEHTLTYWQEWVRNLAIPFEWQEAVIRAAITLKLNTYEDTGA ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEEEEEEECCCCCCC VIAAVTTSIPEAPDTGRNWDYRYCWLRDAYFVINALNRLGATKTMEHYVRFIINTTARNE EEEEEECCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC GRSLRPVYRINGRDDLYETIAYGLPGYREMGPVRIGNQAYEQQQNDVYGSVILATAHLFF CCCCCCEEEECCCHHHHHHHHHCCCCCHHCCCEEECCHHHHHHHCCHHHHHHHHHHHHHH DERLRRRGDESLFRRLEQLGEQAVAVYREPDAGPWEFRGFEKVHTFSAAICWAAARNLRA HHHHHHCCCHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH IAAKLGLMERADYWRRRADEMADTIRNSAWNEQRNSYMASFGGQDLDASLMLLYEWGFLR HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHEEEEEECCCCC AGDPRLAGTVRAVEQELRHGDFLFRYVHEDDFGKPHTAFTTCTFWYIDALAAVGREAEAR CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHH ALFERLLECRNHVGLLSEDIDPYTGELWGNFPQTYSMVGLINSAMRLSRSWEEPL HHHHHHHHHHHCCCCHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA