Definition Halorhodospira halophila SL1 chromosome, complete genome.
Accession NC_008789
Length 2,678,452

Click here to switch to the map view.

The map label for this gene is 121997912

Identifier: 121997912

GI number: 121997912

Start: 1217408

End: 1219195

Strand: Reverse

Name: 121997912

Synonym: Hhal_1121

Alternate gene names: NA

Gene position: 1219195-1217408 (Counterclockwise)

Preceding gene: 121997913

Following gene: 121997911

Centisome position: 45.52

GC content: 66.33

Gene sequence:

>1788_bases
GTGAGCACGCTCGACCAAGCCCTGATTGGCAACTGCGCGTTTGCCGCCCTGGTCAACCGCCAGGCCGAGATCACTTGGGC
GTGCATGCCCCGCTTCGATGGCGATCCGGTCTTCTGCTCCCTGCTCGGCGATCCCGCGGCCGGTGCCGGCGCCGGGCGTT
TCGCCGTCGAGCTGGAGGGGCTGGCCCGCACCGAGCAGTGGTATGTTCGCAATACCGCCATCGTGGTGACGCGGCTCTAC
GACCACCAGGGCGGGGTGGTGGAGGTGACCGATTTCGCCCCCCGCTTCGAGCAGTTCGGCCGCACCTTTCGCCCGGTGGA
GCTGATCCGTCAGGTCCGTCGGGTTGCCGGCTCACCCCTGGTCTCTCTGGTGGTGCGGCCGGTGTTCGATCACGGCCGGT
CGTTGCCCAGCGTGACTCAGGGCAGCAACCACGTGCGCTACGTCGGCCCGGGCCAGGTCCTGCGCCTGACCACCGACGCC
TCGTTGACCGCGGTCCTGGACGAGACCCCGTTCATCCTCGAGGACGACCTGACGCTGGCCTTCGGTCCCGACGAGACCCT
GCTCCAGTCGGCCCGTGAGACCGGCTACCAGTTCTATGAGCACACCCTAACCTATTGGCAGGAGTGGGTGCGCAACCTGG
CCATCCCCTTTGAGTGGCAGGAGGCGGTGATCCGCGCGGCGATCACCCTCAAGCTCAACACCTACGAGGACACCGGTGCG
GTGATCGCCGCGGTGACCACTTCGATCCCCGAGGCCCCGGACACCGGCCGCAACTGGGATTACCGTTACTGTTGGCTGCG
GGACGCCTACTTCGTGATCAACGCCCTCAACCGCCTGGGGGCGACCAAGACGATGGAGCACTACGTGCGCTTCATCATCA
ACACCACTGCCCGCAACGAGGGGCGGTCGCTGCGGCCGGTGTATCGCATCAACGGGCGTGATGACCTTTACGAGACCATC
GCCTACGGCTTGCCCGGATACCGGGAGATGGGGCCGGTGCGCATCGGCAACCAGGCCTACGAGCAGCAGCAGAACGATGT
TTACGGGTCAGTGATCCTGGCCACCGCGCACTTGTTCTTCGACGAGCGGCTGCGCCGCCGCGGCGATGAATCGCTGTTCC
GCCGTCTCGAGCAGCTCGGTGAGCAGGCCGTCGCCGTCTACCGCGAGCCGGATGCTGGCCCCTGGGAGTTCCGCGGCTTT
GAAAAGGTGCATACCTTCTCGGCGGCGATCTGTTGGGCGGCTGCCCGGAACCTGCGTGCCATCGCCGCCAAGCTGGGGTT
GATGGAGCGGGCTGATTACTGGCGCCGCCGGGCCGACGAGATGGCCGACACCATCCGCAACAGCGCCTGGAACGAGCAAC
GCAACAGCTACATGGCCAGTTTCGGCGGCCAGGACCTCGACGCCAGCCTGATGCTGCTCTACGAGTGGGGGTTCCTGCGT
GCCGGAGACCCGCGCCTGGCCGGGACCGTGCGCGCCGTCGAGCAGGAGCTGCGCCACGGCGACTTCCTCTTCCGTTACGT
CCACGAGGACGATTTCGGCAAGCCCCACACGGCCTTCACCACCTGTACCTTCTGGTACATCGACGCCCTGGCGGCGGTGG
GCCGTGAGGCCGAGGCCCGCGCACTGTTCGAGCGCCTGCTCGAATGTCGCAACCACGTGGGTCTGCTCTCGGAGGATATC
GATCCGTACACCGGAGAACTCTGGGGGAACTTCCCGCAGACCTACAGCATGGTCGGTCTGATCAACTCCGCAATGCGCCT
GAGTCGCAGTTGGGAGGAACCGCTGTGA

Upstream 100 bases:

>100_bases
GTCAACGAGCGTGGCGAGGCGGTAGCCTGGGAGGCGAACCCGGCCCGGGGGAAGTAGAGTATCCTCCGGAGAGTGTGGAT
CCGAGCGACGAGGAGGTCCC

Downstream 100 bases:

>100_bases
GTCGACTGGTAACCGTTTCCAATCGTGTGGCCTTGCCCAGCCAGCTGCAGGCCGCGCAGGGTGGTCTGGCCGTCGGCCTG
CGTTCGGCGCTGGAGGAGTC

Product: glycoside hydrolase 15-like

Products: NA

Alternate protein names: Glycosyl Hydrolase; Glycosyl Hydrolase Family; Glycoside Hydrolase Family; Glucoamylase; Glycosy Hydrolase Family Protein; Glycoside Hydrolase Family Protein; Trehalose-Phosphatase; Glucoamylase-Like Glycosyl Hydrolase; Trehalose Phosphatase; Glycosyl Hydrolase Protein; Trehalose-Phosphatase/ Glycoside Hydrolase; Glucoamylase Or Related Glycosyl Hydrolase Protein; Glucoamylase Or Related Glycosyl Hydrolase; Six-Hairpin Glycosidase-Like Protein; Hydrolase; Glycosyl Hydrolase Glycosyl Hydrolase Family; Glycosyl Hydrolase Family Protein; Glucoamylase-Related Protein Trehalase

Number of amino acids: Translated: 595; Mature: 594

Protein sequence:

>595_residues
MSTLDQALIGNCAFAALVNRQAEITWACMPRFDGDPVFCSLLGDPAAGAGAGRFAVELEGLARTEQWYVRNTAIVVTRLY
DHQGGVVEVTDFAPRFEQFGRTFRPVELIRQVRRVAGSPLVSLVVRPVFDHGRSLPSVTQGSNHVRYVGPGQVLRLTTDA
SLTAVLDETPFILEDDLTLAFGPDETLLQSARETGYQFYEHTLTYWQEWVRNLAIPFEWQEAVIRAAITLKLNTYEDTGA
VIAAVTTSIPEAPDTGRNWDYRYCWLRDAYFVINALNRLGATKTMEHYVRFIINTTARNEGRSLRPVYRINGRDDLYETI
AYGLPGYREMGPVRIGNQAYEQQQNDVYGSVILATAHLFFDERLRRRGDESLFRRLEQLGEQAVAVYREPDAGPWEFRGF
EKVHTFSAAICWAAARNLRAIAAKLGLMERADYWRRRADEMADTIRNSAWNEQRNSYMASFGGQDLDASLMLLYEWGFLR
AGDPRLAGTVRAVEQELRHGDFLFRYVHEDDFGKPHTAFTTCTFWYIDALAAVGREAEARALFERLLECRNHVGLLSEDI
DPYTGELWGNFPQTYSMVGLINSAMRLSRSWEEPL

Sequences:

>Translated_595_residues
MSTLDQALIGNCAFAALVNRQAEITWACMPRFDGDPVFCSLLGDPAAGAGAGRFAVELEGLARTEQWYVRNTAIVVTRLY
DHQGGVVEVTDFAPRFEQFGRTFRPVELIRQVRRVAGSPLVSLVVRPVFDHGRSLPSVTQGSNHVRYVGPGQVLRLTTDA
SLTAVLDETPFILEDDLTLAFGPDETLLQSARETGYQFYEHTLTYWQEWVRNLAIPFEWQEAVIRAAITLKLNTYEDTGA
VIAAVTTSIPEAPDTGRNWDYRYCWLRDAYFVINALNRLGATKTMEHYVRFIINTTARNEGRSLRPVYRINGRDDLYETI
AYGLPGYREMGPVRIGNQAYEQQQNDVYGSVILATAHLFFDERLRRRGDESLFRRLEQLGEQAVAVYREPDAGPWEFRGF
EKVHTFSAAICWAAARNLRAIAAKLGLMERADYWRRRADEMADTIRNSAWNEQRNSYMASFGGQDLDASLMLLYEWGFLR
AGDPRLAGTVRAVEQELRHGDFLFRYVHEDDFGKPHTAFTTCTFWYIDALAAVGREAEARALFERLLECRNHVGLLSEDI
DPYTGELWGNFPQTYSMVGLINSAMRLSRSWEEPL
>Mature_594_residues
STLDQALIGNCAFAALVNRQAEITWACMPRFDGDPVFCSLLGDPAAGAGAGRFAVELEGLARTEQWYVRNTAIVVTRLYD
HQGGVVEVTDFAPRFEQFGRTFRPVELIRQVRRVAGSPLVSLVVRPVFDHGRSLPSVTQGSNHVRYVGPGQVLRLTTDAS
LTAVLDETPFILEDDLTLAFGPDETLLQSARETGYQFYEHTLTYWQEWVRNLAIPFEWQEAVIRAAITLKLNTYEDTGAV
IAAVTTSIPEAPDTGRNWDYRYCWLRDAYFVINALNRLGATKTMEHYVRFIINTTARNEGRSLRPVYRINGRDDLYETIA
YGLPGYREMGPVRIGNQAYEQQQNDVYGSVILATAHLFFDERLRRRGDESLFRRLEQLGEQAVAVYREPDAGPWEFRGFE
KVHTFSAAICWAAARNLRAIAAKLGLMERADYWRRRADEMADTIRNSAWNEQRNSYMASFGGQDLDASLMLLYEWGFLRA
GDPRLAGTVRAVEQELRHGDFLFRYVHEDDFGKPHTAFTTCTFWYIDALAAVGREAEARALFERLLECRNHVGLLSEDID
PYTGELWGNFPQTYSMVGLINSAMRLSRSWEEPL

Specific function: Unknown

COG id: COG3387

COG function: function code G; Glucoamylase and related glycosyl hydrolases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 67653; Mature: 67522

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLDQALIGNCAFAALVNRQAEITWACMPRFDGDPVFCSLLGDPAAGAGAGRFAVELEG
CCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCEEEEEECC
LARTEQWYVRNTAIVVTRLYDHQGGVVEVTDFAPRFEQFGRTFRPVELIRQVRRVAGSPL
CCCCHHHEEECEEEEEEEEECCCCCEEEECCCCHHHHHHCCCCCHHHHHHHHHHHHCCHH
VSLVVRPVFDHGRSLPSVTQGSNHVRYVGPGQVLRLTTDASLTAVLDETPFILEDDLTLA
HHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEEEECCCCEEEEECCCCCEEECCEEEE
FGPDETLLQSARETGYQFYEHTLTYWQEWVRNLAIPFEWQEAVIRAAITLKLNTYEDTGA
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEEEEEEECCCCCCC
VIAAVTTSIPEAPDTGRNWDYRYCWLRDAYFVINALNRLGATKTMEHYVRFIINTTARNE
EEEEEECCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC
GRSLRPVYRINGRDDLYETIAYGLPGYREMGPVRIGNQAYEQQQNDVYGSVILATAHLFF
CCCCCCEEEECCCHHHHHHHHHCCCCCHHCCCEEECCHHHHHHHCCHHHHHHHHHHHHHH
DERLRRRGDESLFRRLEQLGEQAVAVYREPDAGPWEFRGFEKVHTFSAAICWAAARNLRA
HHHHHHCCCHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
IAAKLGLMERADYWRRRADEMADTIRNSAWNEQRNSYMASFGGQDLDASLMLLYEWGFLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHEEEEEECCCCC
AGDPRLAGTVRAVEQELRHGDFLFRYVHEDDFGKPHTAFTTCTFWYIDALAAVGREAEAR
CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHH
ALFERLLECRNHVGLLSEDIDPYTGELWGNFPQTYSMVGLINSAMRLSRSWEEPL
HHHHHHHHHHHCCCCHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
STLDQALIGNCAFAALVNRQAEITWACMPRFDGDPVFCSLLGDPAAGAGAGRFAVELEG
CCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCEEEEEECC
LARTEQWYVRNTAIVVTRLYDHQGGVVEVTDFAPRFEQFGRTFRPVELIRQVRRVAGSPL
CCCCHHHEEECEEEEEEEEECCCCCEEEECCCCHHHHHHCCCCCHHHHHHHHHHHHCCHH
VSLVVRPVFDHGRSLPSVTQGSNHVRYVGPGQVLRLTTDASLTAVLDETPFILEDDLTLA
HHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEEEECCCCEEEEECCCCCEEECCEEEE
FGPDETLLQSARETGYQFYEHTLTYWQEWVRNLAIPFEWQEAVIRAAITLKLNTYEDTGA
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEEEEEEECCCCCCC
VIAAVTTSIPEAPDTGRNWDYRYCWLRDAYFVINALNRLGATKTMEHYVRFIINTTARNE
EEEEEECCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC
GRSLRPVYRINGRDDLYETIAYGLPGYREMGPVRIGNQAYEQQQNDVYGSVILATAHLFF
CCCCCCEEEECCCHHHHHHHHHCCCCCHHCCCEEECCHHHHHHHCCHHHHHHHHHHHHHH
DERLRRRGDESLFRRLEQLGEQAVAVYREPDAGPWEFRGFEKVHTFSAAICWAAARNLRA
HHHHHHCCCHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
IAAKLGLMERADYWRRRADEMADTIRNSAWNEQRNSYMASFGGQDLDASLMLLYEWGFLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHEEEEEECCCCC
AGDPRLAGTVRAVEQELRHGDFLFRYVHEDDFGKPHTAFTTCTFWYIDALAAVGREAEAR
CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHH
ALFERLLECRNHVGLLSEDIDPYTGELWGNFPQTYSMVGLINSAMRLSRSWEEPL
HHHHHHHHHHHCCCCHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA