Click here to switch to the map view.

The map label for this gene is gatC

Identifier: 121997795

GI number: 121997795

Start: 1076409

End: 1076696

Strand: Reverse

Name: gatC

Synonym: Hhal_1004

Alternate gene names: 121997795

Gene position: 1076696-1076409 (Counterclockwise)

Preceding gene: 121997807

Following gene: 121997794

Centisome position: 40.2

GC content: 68.4

Gene sequence:

>288_bases
ATGGCCATCGACGCAGATGAGGTGCAGCAGATTGCGCACCTGGCACGCATCCGGATCGACGAGGAGGCGGTCTCCGGCTA
CGCCCGCGACCTGACCGGGATCCTGGCGTTCGTCGAGCAGATGGGGAATGTCGATACCGACGGCGTCGAGCCCATGGCCC
ACCCGTGGGATGCCACGCAGCGGCTGCGCCCGGACGAGGTCACCGAACCCAATCTGCGCGAGCACTACCAGTCCGGGGCC
CCGGCCGTCGAAGCCGGCCTGTACCTCGTCCCCCGCGTCGTCGAGTAA

Upstream 100 bases:

>100_bases
AAGGTGGCTCAATCTAGCAGTGCCCCGGGGTTTGGGCAAGCTCGGGGCTATGGTAGGTTCTGCGGTTGCTATCGCGCCAG
TTAAGGGGGAGAGAGGCTCT

Downstream 100 bases:

>100_bases
CGGAAGCCGAACGCCCATGCATCAGAAGACCGTCGCCGAGATCTCCGCAGCACTGCACGCCGGAGAGATCTCTAGTCGTG
AACTCACCGATTCCCTGCTC

Product: aspartyl/glutamyl-tRNA amidotransferase subunit C

Products: NA

Alternate protein names: Asp/Glu-ADT subunit C

Number of amino acids: Translated: 95; Mature: 94

Protein sequence:

>95_residues
MAIDADEVQQIAHLARIRIDEEAVSGYARDLTGILAFVEQMGNVDTDGVEPMAHPWDATQRLRPDEVTEPNLREHYQSGA
PAVEAGLYLVPRVVE

Sequences:

>Translated_95_residues
MAIDADEVQQIAHLARIRIDEEAVSGYARDLTGILAFVEQMGNVDTDGVEPMAHPWDATQRLRPDEVTEPNLREHYQSGA
PAVEAGLYLVPRVVE
>Mature_94_residues
AIDADEVQQIAHLARIRIDEEAVSGYARDLTGILAFVEQMGNVDTDGVEPMAHPWDATQRLRPDEVTEPNLREHYQSGAP
AVEAGLYLVPRVVE

Specific function: Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction take

COG id: COG0721

COG function: function code J; Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gatC family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GATC_HALHL (A1WVR8)

Other databases:

- EMBL:   CP000544
- RefSeq:   YP_001002582.1
- ProteinModelPortal:   A1WVR8
- SMR:   A1WVR8
- STRING:   A1WVR8
- GeneID:   4709578
- GenomeReviews:   CP000544_GR
- KEGG:   hha:Hhal_1004
- eggNOG:   COG0721
- HOGENOM:   HBG586403
- OMA:   SVTPMAM
- ProtClustDB:   PRK00034
- BioCyc:   HHAL349124:HHAL_1004-MONOMER
- GO:   GO:0006412
- HAMAP:   MF_00122
- InterPro:   IPR003837
- TIGRFAMs:   TIGR00135

Pfam domain/function: PF02686 Glu-tRNAGln

EC number: 6.3.5.-

Molecular weight: Translated: 10526; Mature: 10395

Theoretical pI: Translated: 4.13; Mature: 4.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIDADEVQQIAHLARIRIDEEAVSGYARDLTGILAFVEQMGNVDTDGVEPMAHPWDATQ
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
RLRPDEVTEPNLREHYQSGAPAVEAGLYLVPRVVE
CCCCCCCCCCCHHHHHHCCCCHHHHHHHHCCCCCC
>Mature Secondary Structure 
AIDADEVQQIAHLARIRIDEEAVSGYARDLTGILAFVEQMGNVDTDGVEPMAHPWDATQ
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
RLRPDEVTEPNLREHYQSGAPAVEAGLYLVPRVVE
CCCCCCCCCCCHHHHHHCCCCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA