| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121997720
Identifier: 121997720
GI number: 121997720
Start: 1006185
End: 1007213
Strand: Reverse
Name: 121997720
Synonym: Hhal_0929
Alternate gene names: NA
Gene position: 1007213-1006185 (Counterclockwise)
Preceding gene: 121997721
Following gene: 121997719
Centisome position: 37.6
GC content: 78.23
Gene sequence:
>1029_bases ATGAACCACGCCACCACCGCCCCCGTGCTGTTCGAGCCGCTGGCCGCCTGGCACGCCGCCGGCACCGATCCCGAGGCCCT GGCCCGTGCGGTGACCGACGCCCCGCCCGTGGCACAGCCCGAGCTGCTCGGCGAGGCGCCGCAGCAGCCGATCCCAGTGC TCAGCGATCCGGCGCTGGACGGCCAGGGCTACGCCGCGCGCATGGACCGCCTGGTCGCGGACAGCGCCCCGCGGCTGAGC GAGCGCCTCACCGCCGCGCCCCCCGCGGCGGCGGTGGTGATCCCGCCGGGGCCCCATCAACCCGGGGTGCGCTGGGCGCA GCACCACTGGCTGATCGGGCAGCTGACCGATCGGGTATCGCCGCTTCGGCGGGTGGCCTGGTGGCGGCCGCAGGGGCCCG TATCGGCGGTGCAGTTGCTCCACCGGGCCGCGCAGGCGGTTGCCGAGGGTCGGCTGGCGAGCCTCCTGATCGGCGGCGTC GATCCCTGCGCGGCCCCGGCGGCCTGCGCCGATCCGCGCTTGCGCCGCCGGTGCCTCCCCGCCATCGACGGACCCCCCGC CGCGGATGGCGCCGCCTTCCTGCTGCTGCGCACCGCCCCCGCCGGGTCGGCCGGCCTGCTGCTCCAGCGCGCGGCCCTGG GCGGTCCGTCGGAGCAGCCCGCCACCTGGCAGCGACTGCTCCAGGAGACCGTGCCGGAAGCAGACGCTGCCGGCGCCCTG GTCGAGGCCCACGGGTTCGGCGCCACCCCGGCAGAGCGCCAGGCCTGGGCCAACGTCCGCCGGCTGGTGCCCGCCCTGCG GCGCACCCCGGCCGCCGCGCGCCACCTGCTGTGGCGCGGCCTAGGGTTTTCCGGCGCGGCCACACTGCCCCTGCAGCTGG TGGCAGCCGCCGGGCTGCTGCACGCCGCCGAGGGCCCGCAGCGCATCCTGCTGACCGCCGCGGGGGACGGCGTCGCCGGC GTGTTCGACCTGCGCAAGCCGGCCGAAAGCACCGTGGGGGGTGGCGCCTCCTCTGGGGGTGCCGCGTGA
Upstream 100 bases:
>100_bases GCCGGGTGTGGCTGGTCTGGCGGGGGTGGGTGCCGGAGCCGGCGCCGGGGCCGGGCTGGGCATTGCGGGTCGATGCCGAC GGGATCGGGGGCGGAGAGCG
Downstream 100 bases:
>100_bases CCCGGCCCACGGTAACCGCCAATGGCCGCACCCTGGTGCACGCTGGCTCCGGGGGCGAGTTGCTGACCACCGACGTCTGC CGCACCACCGTCGGCAGCTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 342; Mature: 342
Protein sequence:
>342_residues MNHATTAPVLFEPLAAWHAAGTDPEALARAVTDAPPVAQPELLGEAPQQPIPVLSDPALDGQGYAARMDRLVADSAPRLS ERLTAAPPAAAVVIPPGPHQPGVRWAQHHWLIGQLTDRVSPLRRVAWWRPQGPVSAVQLLHRAAQAVAEGRLASLLIGGV DPCAAPAACADPRLRRRCLPAIDGPPAADGAAFLLLRTAPAGSAGLLLQRAALGGPSEQPATWQRLLQETVPEADAAGAL VEAHGFGATPAERQAWANVRRLVPALRRTPAAARHLLWRGLGFSGAATLPLQLVAAAGLLHAAEGPQRILLTAAGDGVAG VFDLRKPAESTVGGGASSGGAA
Sequences:
>Translated_342_residues MNHATTAPVLFEPLAAWHAAGTDPEALARAVTDAPPVAQPELLGEAPQQPIPVLSDPALDGQGYAARMDRLVADSAPRLS ERLTAAPPAAAVVIPPGPHQPGVRWAQHHWLIGQLTDRVSPLRRVAWWRPQGPVSAVQLLHRAAQAVAEGRLASLLIGGV DPCAAPAACADPRLRRRCLPAIDGPPAADGAAFLLLRTAPAGSAGLLLQRAALGGPSEQPATWQRLLQETVPEADAAGAL VEAHGFGATPAERQAWANVRRLVPALRRTPAAARHLLWRGLGFSGAATLPLQLVAAAGLLHAAEGPQRILLTAAGDGVAG VFDLRKPAESTVGGGASSGGAA >Mature_342_residues MNHATTAPVLFEPLAAWHAAGTDPEALARAVTDAPPVAQPELLGEAPQQPIPVLSDPALDGQGYAARMDRLVADSAPRLS ERLTAAPPAAAVVIPPGPHQPGVRWAQHHWLIGQLTDRVSPLRRVAWWRPQGPVSAVQLLHRAAQAVAEGRLASLLIGGV DPCAAPAACADPRLRRRCLPAIDGPPAADGAAFLLLRTAPAGSAGLLLQRAALGGPSEQPATWQRLLQETVPEADAAGAL VEAHGFGATPAERQAWANVRRLVPALRRTPAAARHLLWRGLGFSGAATLPLQLVAAAGLLHAAEGPQRILLTAAGDGVAG VFDLRKPAESTVGGGASSGGAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35165; Mature: 35165
Theoretical pI: Translated: 8.54; Mature: 8.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNHATTAPVLFEPLAAWHAAGTDPEALARAVTDAPPVAQPELLGEAPQQPIPVLSDPALD CCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCC GQGYAARMDRLVADSAPRLSERLTAAPPAAAVVIPPGPHQPGVRWAQHHWLIGQLTDRVS CCCHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH PLRRVAWWRPQGPVSAVQLLHRAAQAVAEGRLASLLIGGVDPCAAPAACADPRLRRRCLP HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC AIDGPPAADGAAFLLLRTAPAGSAGLLLQRAALGGPSEQPATWQRLLQETVPEADAAGAL CCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHCCCE VEAHGFGATPAERQAWANVRRLVPALRRTPAAARHLLWRGLGFSGAATLPLQLVAAAGLL EECCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH HAAEGPQRILLTAAGDGVAGVFDLRKPAESTVGGGASSGGAA HHCCCCCEEEEEECCCCCCHHHHHCCCHHHHCCCCCCCCCCC >Mature Secondary Structure MNHATTAPVLFEPLAAWHAAGTDPEALARAVTDAPPVAQPELLGEAPQQPIPVLSDPALD CCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCC GQGYAARMDRLVADSAPRLSERLTAAPPAAAVVIPPGPHQPGVRWAQHHWLIGQLTDRVS CCCHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH PLRRVAWWRPQGPVSAVQLLHRAAQAVAEGRLASLLIGGVDPCAAPAACADPRLRRRCLP HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC AIDGPPAADGAAFLLLRTAPAGSAGLLLQRAALGGPSEQPATWQRLLQETVPEADAAGAL CCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHCCCE VEAHGFGATPAERQAWANVRRLVPALRRTPAAARHLLWRGLGFSGAATLPLQLVAAAGLL EECCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH HAAEGPQRILLTAAGDGVAGVFDLRKPAESTVGGGASSGGAA HHCCCCCEEEEEECCCCCCHHHHHCCCHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA